mutant.rules

Class RuleDACancerogenicityAromaticAmines

java.lang.Object

java.util.Observable

toxTree.tree.AbstractRule

toxTree.qsar.LinearDiscriminantRule

mutant.rules.RuleDACancerogenicityAromaticAmines

All Implemented Interfaces:

Serializable, Cloneable, IDecisionRule, IDescriptorBased, IImplementationDetails, XMLSerializable

public class RuleDACancerogenicityAromaticAmines
extends LinearDiscriminantRule

See Also:

Serialized Form

Field Summary

Fields inherited from class toxTree.qsar.LinearDiscriminantRule

dictionary, model, threshold

Fields inherited from class toxTree.tree.AbstractRule

changes, editable, ERR_STRUCTURENOTPREPROCESSED, examples, explanation, id, logger, MSG_NO, MSG_YES, no, residueIDHidden, title

Fields inherited from interface toxTree.core.XMLSerializable

xmltag_CATEGORIES, xmltag_CATEGORY, xmltag_CATEGORYTHRESHOLD, xmltag_CLASS, xmltag_EXPLANATION, xmltag_ID, xmltag_METHOD, xmltag_METHODPARAMETER, xmltag_METHODS, xmltag_NAME, xmltag_RULE, xmltag_RULEEXAMPLE, xmltag_RULES, xmltag_TREEROOT

Constructor Summary

Constructors

Constructor and Description
RuleDACancerogenicityAromaticAmines()

Method Summary

Modifier and Type	Method and Description
protected boolean	compare(double value, double threshold)
static LinearQSARModel	createCancerogenicityAromaticAminesModel()
protected DRuleException	createException(ambit2.base.exceptions.QSARModelException x)
String	getImplementationDetails() Thus, if calculated w >29.08, then the substance should be carcinogen if calculated w< 29.08, then the substance should be noncarcinogen

Methods inherited from class toxTree.qsar.LinearDiscriminantRule

getModel, getSelector, getThreshold, hint, isCalculated, isImplemented, setCalculated, setModel, setThreshold, verifyRule

Methods inherited from class toxTree.tree.AbstractRule

addPropertyChangeListener, clearFlags, clone, createRule, equals, fromXML, getEditor, getExampleMolecule, getExamples, getExplanation, getID, getNum, getTitle, hideResiduesID, isEditable, isResidueIDHidden, log, log, log, makeMolecule, removePropertyChangeListener, setEditable, setExampleMolecule, setExamples, setExplanation, setID, setNum, setTitle, toShallowXML, toString, toXML

Methods inherited from class java.util.Observable

addObserver, clearChanged, countObservers, deleteObserver, deleteObservers, hasChanged, notifyObservers, notifyObservers, setChanged

Methods inherited from class java.lang.Object

finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

RuleDACancerogenicityAromaticAmines

public RuleDACancerogenicityAromaticAmines()

Method Detail

createCancerogenicityAromaticAminesModel

public static LinearQSARModel createCancerogenicityAromaticAminesModel()

compare

protected boolean compare(double value,
                          double threshold)

Overrides:

compare in class LinearDiscriminantRule

getImplementationDetails

public String getImplementationDetails()

Thus, if calculated w >29.08, then the substance should be carcinogen if calculated w< 29.08, then the substance should be noncarcinogen

Specified by:

getImplementationDetails in interface IImplementationDetails

Overrides:

getImplementationDetails in class LinearDiscriminantRule

createException

protected DRuleException createException(ambit2.base.exceptions.QSARModelException x)

Specified by:

createException in class LinearDiscriminantRule