Toxtree 3.1.0 API

Packages

Package	Description
com.molecularnetworks.start
com.molecularnetworks.start.categories
com.molecularnetworks.start.rules
cramer2	Class CramerRules is the implementation of Cramer rules [Cramer et al,78].
cramer2.categories
cramer2.rules
eye	Class SicretRules is the implementation of BfR rules for estimating skin irritation and corrosion potential.
eye.categories	The package contains implementations of IDecisionCategory categories for EyeIrritationRules decision tree.
eye.rules	The package contains implementations of IDecisionRule rules for SicretRules decision tree.
mic
mic.categories
mic.rules
michaelacceptors
michaelacceptors.categories
michaelacceptors.rules
mutant
mutant.categories
mutant.descriptors
mutant.rules
sicret	Class SicretRules is the implementation of BfR rules for estimating skin irritation and corrosion potential.
sicret.categories	The package contains implementations of IDecisionCategory categories for SicretRules decision tree.
sicret.rules	The package contains implementations of IDecisionRule rules for SicretRules decision tree.
structurefeatures.rules
toxTree.apps
toxTree.apps.toxForest
toxTree.core	This packages contains only interface definitions, defining essential classes in toxTree application.
toxtree.data
toxTree.data	Classes that hold the data used in ToxTreeApp
toxTree.exceptions	Exceptions defined for toxTree classes
toxTree.io	Input output support.
toxTree.io.batch	Batch processing facility.
toxtree.lookup
toxtree.plugins.ames
toxtree.plugins.ames.categories
toxtree.plugins.ames.descriptors
toxtree.plugins.ames.rules
toxtree.plugins.dnabinding
toxtree.plugins.dnabinding.categories
toxtree.plugins.dnabinding.rules
toxtree.plugins.func
toxtree.plugins.func.categories
toxtree.plugins.func.rules
toxtree.plugins.kroes
toxtree.plugins.kroes.categories
toxtree.plugins.kroes.rules
toxtree.plugins.lewis
toxtree.plugins.lewis.categories
toxtree.plugins.lewis.rules
toxtree.plugins.moa
toxtree.plugins.moa.categories
toxtree.plugins.moa.rules
toxtree.plugins.proteinbinding
toxtree.plugins.proteinbinding.categories
toxtree.plugins.proteinbinding.rules
toxtree.plugins.search
toxtree.plugins.search.categories
toxtree.plugins.search.rules
toxtree.plugins.skinsensitisation
toxtree.plugins.skinsensitisation.categories
toxtree.plugins.skinsensitisation.rules
toxtree.plugins.smartcyp
toxtree.plugins.smartcyp.categories
toxtree.plugins.smartcyp.rules
toxtree.plugins.verhaar2	Class toxtree.plugins.verhaar2.VerhaarScheme is the implementation of modified Verhaar structural scheme, according to recommendation from
toxtree.plugins.verhaar2.rules	The package contains implementations of IDecisionRule rules for VerhaarScheme decision tree.
toxTree.qsar
toxTree.query	Various classes
toxTree.query.metabolite
toxTree.query.remote
toxtree.tree
toxTree.tree	This packages contains abstract and default classes implementing the interfaces defined in toxTree.core package.
toxTree.tree.categories	The package contains default implementations of IDecisionCategory categories.
toxTree.tree.cramer	Class CramerRules is the implementation of Cramer rules [Cramer et al,78].
toxtree.tree.cramer3
toxtree.tree.cramer3.groups
toxtree.tree.cramer3.rules
toxTree.tree.demo	Two simple demo decision trees.
toxtree.tree.rules
toxTree.tree.rules	The package contains several generic implementations of IDecisionRule rules
toxTree.tree.rules.smarts	SMARTS support.
toxTree.tree.stats
toxtree.ui	Base classes for ToxTreeApp user interface
toxTree.ui
toxtree.ui.actions	Actions (derived from AbstractAction used in ToxTreeApp main menu.
toxtree.ui.batch	User interface for toxTree.io.batch
toxtree.ui.editors
toxtree.ui.metabolites
toxtree.ui.molecule	UI classes for viewing and editing a molecule
toxtree.ui.tree	User interface for viewing and editing a decision tree IDecisionMethod
toxtree.ui.tree.actions	Actions (derived from AbstractAction for the decision tree user interface toxTree.ui.tree
toxtree.ui.tree.categories	User interface for viewing and editing categories IDecisionCategory in a decision tree IDecisionMethod
toxTree.ui.tree.categories
toxtree.ui.tree.molecule
toxtree.ui.tree.qsar
toxtree.ui.tree.rules
toxtree.ui.wizard	Wizard support.
verhaar	Class VerhaarScheme is the implementation of Verhaar structural scheme for estimating toxicity mode of action.
verhaar.categories	The package contains implementations of IDecisionCategory categories for VerhaarScheme decision tree.
verhaar.query
verhaar.rules	The package contains implementations of IDecisionRule rules for VerhaarScheme decision tree.
verhaar.rules.helper