Hierarchy For All Packages

Package Hierarchies:

• com.molecularnetworks.start,
• com.molecularnetworks.start.categories,
• com.molecularnetworks.start.rules,
• cramer2,
• cramer2.categories,
• cramer2.rules,
• eye,
• eye.categories,
• eye.rules,
• mic,
• mic.categories,
• mic.rules,
• michaelacceptors,
• michaelacceptors.categories,
• michaelacceptors.rules,
• mutant,
• mutant.categories,
• mutant.descriptors,
• mutant.rules,
• sicret,
• sicret.categories,
• sicret.rules,
• structurefeatures.rules,
• toxTree.apps,
• toxTree.apps.toxForest,
• toxTree.core,
• toxtree.data,
• toxTree.data,
• toxTree.exceptions,
• toxTree.io,
• toxTree.io.batch,
• toxtree.lookup,
• toxtree.plugins.ames,
• toxtree.plugins.ames.categories,
• toxtree.plugins.ames.descriptors,
• toxtree.plugins.ames.rules,
• toxtree.plugins.dnabinding,
• toxtree.plugins.dnabinding.categories,
• toxtree.plugins.dnabinding.rules,
• toxtree.plugins.func,
• toxtree.plugins.func.categories,
• toxtree.plugins.func.rules,
• toxtree.plugins.kroes,
• toxtree.plugins.kroes.categories,
• toxtree.plugins.kroes.rules,
• toxtree.plugins.lewis,
• toxtree.plugins.lewis.categories,
• toxtree.plugins.lewis.rules,
• toxtree.plugins.moa,
• toxtree.plugins.moa.categories,
• toxtree.plugins.moa.rules,
• toxtree.plugins.proteinbinding,
• toxtree.plugins.proteinbinding.categories,
• toxtree.plugins.proteinbinding.rules,
• toxtree.plugins.search,
• toxtree.plugins.search.categories,
• toxtree.plugins.search.rules,
• toxtree.plugins.skinsensitisation,
• toxtree.plugins.skinsensitisation.categories,
• toxtree.plugins.skinsensitisation.rules,
• toxtree.plugins.smartcyp,
• toxtree.plugins.smartcyp.categories,
• toxtree.plugins.smartcyp.rules,
• toxtree.plugins.verhaar2,
• toxtree.plugins.verhaar2.rules,
• toxTree.qsar,
• toxTree.query,
• toxTree.query.metabolite,
• toxTree.query.remote,
• toxtree.tree,
• toxTree.tree,
• toxTree.tree.categories,
• toxTree.tree.cramer,
• toxtree.tree.cramer3,
• toxtree.tree.cramer3.groups,
• toxtree.tree.cramer3.rules,
• toxTree.tree.demo,
• toxtree.tree.rules,
• toxTree.tree.rules,
• toxTree.tree.rules.smarts,
• toxTree.tree.stats,
• toxtree.ui,
• toxTree.ui,
• toxtree.ui.actions,
• toxtree.ui.batch,
• toxtree.ui.editors,
• toxtree.ui.metabolites,
• toxtree.ui.molecule,
• toxtree.ui.tree,
• toxtree.ui.tree.actions,
• toxtree.ui.tree.categories,
• toxTree.ui.tree.categories,
• toxtree.ui.tree.molecule,
• toxtree.ui.tree.qsar,
• toxtree.ui.tree.rules,
• toxtree.ui.wizard,
• verhaar,
• verhaar.categories,
• verhaar.query,
• verhaar.rules,
• verhaar.rules.helper

Class Hierarchy

• java.lang.Object
  • javax.swing.AbstractAction (implements javax.swing.Action, java.lang.Cloneable, java.io.Serializable)
    • ambit2.jchempaint.editor.AbstractMoleculeAction
      • toxtree.ui.molecule.MoleculeEditAction
        • toxtree.ui.tree.rules.RuleMoleculeEditAction (implements toxtree.ui.tree.actions.IRuleAction)
          • toxtree.ui.tree.rules.RuleDeleteSubstructureAction
          • toxtree.ui.tree.rules.RuleExampleEditAction
          • toxtree.ui.tree.rules.RuleSubstructuresEditAction
    • toxtree.ui.molecule.AbstractMoleculeAction
    • toxtree.ui.tree.actions.AbstractRuleAction (implements toxtree.ui.tree.actions.IRuleAction)
      • toxtree.ui.tree.actions.SubstructureFromListAction
      • toxtree.ui.tree.actions.SubstructuresFromFileAction
    • toxtree.ui.tree.actions.AbstractTreeAction (implements toxtree.ui.tree.actions.ITreeAction)
      • toxtree.ui.tree.actions.EditCategoryAction (implements toxtree.ui.tree.actions.ICategoryAction)
      • toxtree.ui.tree.actions.EditRuleAction (implements toxtree.ui.tree.actions.IRuleAction)
      • toxtree.ui.tree.actions.EditTreeExplanation
      • toxtree.ui.tree.actions.NewRuleAction
      • toxtree.ui.tree.actions.SaveTreeAction
      • toxtree.ui.tree.actions.SelectCategoryFromListAction
      • toxtree.ui.tree.actions.SetBranchAction (implements toxtree.ui.tree.actions.INodeAction)
      • toxtree.ui.tree.actions.VerifyUnreachableRulesAction
      • toxtree.ui.tree.actions.VerifyUnusedCategories
    • toxtree.ui.tree.actions.AddCategoryAction
    • toxtree.ui.actions.DataContainerAction
      • toxtree.ui.actions.NewMoleculeAction
    • toxtree.ui.actions.DataModuleAction
      • toxtree.ui.actions.AboutAction
      • toxtree.ui.actions.BatchAction
      • toxtree.ui.molecule.ClearFilteredSubsetsAction
      • toxtree.ui.tree.actions.ClearMethodsList
      • toxtree.ui.actions.ClearResultAction
      • toxtree.ui.actions.EditCompoundAction
      • toxtree.ui.tree.actions.EditDecisionMethodAction
        • toxtree.ui.tree.actions.LoadAndEditTreeAction
        • toxtree.ui.tree.actions.NewTreeAction
        • toxtree.ui.tree.actions.SelectAndEditTreeAction
      • toxtree.ui.actions.EstimateAction
      • toxtree.ui.actions.EstimateAllAction
      • toxtree.ui.actions.ExplainAction
      • toxtree.ui.molecule.GoToRecordAction
      • toxtree.ui.actions.InfoAction
      • toxtree.ui.tree.actions.LiadMethodsListAction
      • toxtree.ui.tree.actions.LoadTreeAction
      • toxtree.ui.molecule.LookupCompoundAction
      • toxtree.ui.actions.OpenFileAction
      • toxtree.ui.actions.QuitAction
      • toxtree.ui.actions.SaveFileAction
      • toxtree.ui.tree.actions.SaveMethodsListAction
      • toxtree.ui.tree.actions.SelectNewTreeAction
      • toxtree.ui.tree.actions.SelectTreeAction
      • toxtree.ui.molecule.ShowFilteredFileAction
      • toxtree.ui.tree.actions.TreeOptionsAction
      • toxtree.ui.tree.actions.ViewTreeAction
    • toxtree.ui.actions.HelpAction
  • toxTree.apps.AbstractApplication
    • toxTree.apps.CompoundMethodApplication
      • toxTree.apps.toxForest.ToxForestApp
      • toxTree.apps.ToxTreeApp
  • java.util.AbstractCollection<E> (implements java.util.Collection<E>)
    • java.util.AbstractList<E> (implements java.util.List<E>)
      • java.util.ArrayList<E> (implements java.lang.Cloneable, java.util.List<E>, java.util.RandomAccess, java.io.Serializable)
        • toxTree.data.ListOfAtomContainers (implements org.openscience.cdk.interfaces.IAtomContainerSet)
          • toxTree.query.QueryAtomContainers
        • toxTree.data.SortedPropertyList
        • toxTree.core.ToxTreePackageEntries
    • java.util.AbstractSet<E> (implements java.util.Set<E>)
      • java.util.TreeSet<E> (implements java.lang.Cloneable, java.util.NavigableSet<E>, java.io.Serializable)
        • toxTree.core.SmartElementsList (implements java.io.Serializable)
  • toxTree.data.AbstractFilter (implements toxTree.data.IObjectFilter)
    • toxTree.data.ObjectPropertyFilter
      • toxTree.data.CategoryFilter
  • toxTree.qsar.AbstractQSARModel (implements toxTree.core.IDescriptorBased, ambit2.base.data.IModel, java.io.Serializable)
    • toxTree.qsar.LinearQSARModel
  • javax.swing.table.AbstractTableModel (implements java.io.Serializable, javax.swing.table.TableModel)
    • toxtree.ui.molecule.AtomContainerPropertyTableModel
    • toxtree.ui.HashtableModel
    • toxtree.ui.tree.ListTableModel<T> (implements java.util.Observer)
      • toxtree.ui.tree.categories.CategoriesTableModel (implements java.util.Observer)
      • toxtree.ui.tree.DecisionMethodsTableModel
      • toxtree.ui.tree.rules.DecisionNodesListTableModel
      • toxtree.ui.tree.QueryAtomContainersModel (implements java.util.Observer)
      • toxtree.ui.tree.ToxTreePackageEntryModel
  • toxTree.tree.AbstractTreePrinter (implements toxTree.core.IProcessRule)
    • toxTree.tree.AbstractTreeWriter
      • toxTree.tree.ReportTreePrinter (implements toxTree.core.IProcessRule)
      • toxTree.tree.SimpleTreePrinter (implements toxTree.core.IProcessRule)
    • toxTree.tree.PDFTreePrinter (implements toxTree.core.IProcessRule)
  • javax.swing.ActionMap (implements java.io.Serializable)
    • toxtree.data.ActionList
      • toxTree.apps.toxForest.ToxForestActions
      • toxtree.data.ToxTreeActions
    • toxtree.ui.tree.EditTreeActions
  • toxtree.tree.rules.ApplyRuleOptions (implements java.beans.PropertyChangeListener, java.io.Serializable)
  • toxTree.io.batch.BatchFactory
  • toxtree.tree.BundleRuleResource
  • toxTree.ui.tree.categories.CategoriesRenderer
  • org.openscience.cdk.ChemObject (implements java.lang.Cloneable, org.openscience.cdk.interfaces.IChemObject, java.io.Serializable)
    • org.openscience.cdk.ElectronContainer (implements java.lang.Cloneable, org.openscience.cdk.interfaces.IElectronContainer, java.io.Serializable)
      • org.openscience.cdk.Association (implements java.lang.Cloneable, java.io.Serializable)
        • toxTree.query.MyAssociationBond
      • org.openscience.cdk.Bond (implements java.lang.Cloneable, org.openscience.cdk.interfaces.IBond, java.io.Serializable)
        • verhaar.query.QueryUnsaturatedBond (implements org.openscience.cdk.isomorphism.matchers.IQueryBond)
        • toxTree.query.TopologyAnyBond (implements org.openscience.cdk.isomorphism.matchers.IQueryBond)
    • toxTree.data.MoleculesFile (implements org.openscience.cdk.interfaces.IAtomContainerSet, org.openscience.cdk.interfaces.IChemObjectListener)
  • org.openscience.cdk.silent.ChemObject (implements java.lang.Cloneable, org.openscience.cdk.interfaces.IChemObject, java.io.Serializable)
    • org.openscience.cdk.silent.ElectronContainer (implements java.lang.Cloneable, org.openscience.cdk.interfaces.IElectronContainer, java.io.Serializable)
      • org.openscience.cdk.silent.Bond (implements java.lang.Cloneable, org.openscience.cdk.interfaces.IBond, java.io.Serializable)
        • verhaar.query.QueryAssociationBond (implements org.openscience.cdk.isomorphism.matchers.IQueryBond)
  • org.openscience.cdk.io.ChemObjectIO (implements org.openscience.cdk.io.IChemObjectIO)
    • org.openscience.cdk.io.DefaultChemObjectWriter (implements org.openscience.cdk.io.IChemObjectWriter)
      • ambit2.core.io.FilesWithHeaderWriter
        • toxTree.io.PDFWriter
  • java.lang.ClassLoader
    • java.security.SecureClassLoader
      • java.net.URLClassLoader (implements java.io.Closeable)
        • toxTree.core.ToxTreeClassLoader
  • java.awt.Component (implements java.awt.image.ImageObserver, java.awt.MenuContainer, java.io.Serializable)
    • java.awt.Container
      • javax.swing.JComponent (implements java.io.Serializable)
        • prefuse.Display
          • toxtree.ui.tree.TreePrefuse (implements toxtree.ui.tree.ITreeView)
        • toxtree.ui.tree.JCustomTreeComponent (implements toxtree.ui.tree.ITreeView, java.util.Observer)
        • javax.swing.JPanel (implements javax.accessibility.Accessible)
          • toxtree.ui.tree.categories.CategoriesPanel (implements java.util.Observer)
          • toxtree.ui.tree.molecule.CompoundPanel (implements java.util.Observer, java.beans.PropertyChangeListener)
            • toxTree.apps.toxForest.ToxForestCompoundPanel
          • toxtree.ui.DataModulePanel<DM> (implements java.util.Observer)
            • toxtree.ui.HazardPanel
            • toxTree.apps.toxForest.ToxForestDataModulePanel
          • toxtree.ui.tree.DecisionNodePanel (implements java.util.Observer)
          • toxtree.ui.wizard.EditorPanel
          • toxtree.ui.tree.ListPanel (implements javax.swing.event.ListSelectionListener)
          • toxtree.ui.metabolites.MetabolitesPanel
          • toxtree.ui.molecule.NavigationPanel (implements java.util.Observer)
          • toxtree.ui.OptionsPanel (implements java.awt.event.FocusListener, java.awt.event.ItemListener)
          • toxtree.ui.tree.qsar.OptionsPanel<T>
            • toxtree.ui.tree.qsar.DescriptorOptions
          • toxtree.ui.PropertyEditor
          • toxtree.ui.molecule.PropertyPanel
          • toxtree.ui.wizard.RadioBoxPanel<T>
          • toxtree.ui.tree.rules.RulePanel (implements java.awt.event.FocusListener, toxTree.core.IDecisionRuleEditor, java.util.Observer)
          • toxtree.ui.tree.rules.SmartsPanelEditor
          • toxtree.ui.StatusBar (implements java.util.Observer, java.beans.PropertyChangeListener)
          • toxtree.ui.molecule.StructureEntryPanel
            • toxtree.ui.molecule.SmilesEntryPanel (implements java.awt.event.ActionListener, java.awt.event.ItemListener)
          • toxtree.ui.tree.rules.SubstructureRulePanel (implements toxTree.core.IDecisionRuleEditor)
          • toxtree.ui.molecule.TopPanel (implements java.util.Observer)
          • toxtree.ui.tree.ToxTreeEditorPanel (implements java.awt.event.FocusListener, toxTree.core.IToxTreeEditor, java.util.Observer)
            • toxtree.ui.tree.categories.CategoryPanel (implements toxTree.core.IDecisionCategoryEditor)
            • toxtree.ui.tree.rules.RuleEditor (implements toxTree.core.IDecisionRuleEditor)
              • toxtree.ui.tree.rules.RulePropertyEditor
              • toxtree.ui.tree.qsar.RuleQSARModelEditor
              • toxtree.ui.tree.rules.RuleRangeEditor
              • toxtree.ui.tree.rules.RuleStructuresPanel (implements toxTree.core.IDecisionRuleEditor)
              • toxtree.ui.tree.rules.SMARTSRuleEditor (implements toxTree.core.IDecisionRuleEditor)
          • toxtree.ui.tree.TreeDrawing (implements java.beans.PropertyChangeListener)
          • toxtree.ui.tree.TreeEditorPanel (implements toxTree.core.IDecisionMethodEditor)
          • toxtree.ui.tree.TreePanel (implements java.util.Observer, javax.swing.event.TreeSelectionListener)
        • javax.swing.JSplitPane (implements javax.accessibility.Accessible)
          • toxtree.ui.tree.TreeOptions
        • javax.swing.JTabbedPane (implements javax.accessibility.Accessible, java.io.Serializable, javax.swing.SwingConstants)
          • toxtree.ui.tree.qsar.QSARModelEditor (implements toxTree.core.IToxTreeEditor)
      • java.awt.Window (implements javax.accessibility.Accessible)
        • java.awt.Dialog
          • javax.swing.JDialog (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
            • toxtree.ui.batch.AbstractJobProcessingDialog
              • toxtree.ui.batch.BatchProcessingDialog (implements java.util.Observer)
        • java.awt.Frame (implements java.awt.MenuContainer)
          • javax.swing.JFrame (implements javax.accessibility.Accessible, javax.swing.RootPaneContainer, javax.swing.WindowConstants)
            • toxtree.ui.metabolites.MetabolitesFrame
            • toxtree.ui.tree.TreeFrame
  • toxTree.tree.stats.ConfusionMatrix<A,B>
  • toxTree.core.ConnectionMatrix (implements org.openscience.cdk.graph.matrix.IGraphMatrix)
  • toxTree.tree.rules.smarts.Convertor
  • toxTree.tree.DecisionNodesFactory (implements toxTree.tree.IDecisionNodesFactory, java.io.Serializable)
  • toxtree.ui.tree.DecisionTreeModel (implements javax.swing.tree.TreeModel)
  • toxTree.tree.rules.DefaultAlertCounter (implements toxTree.tree.rules.IAlertCounter, java.io.Serializable)
  • net.idea.modbcum.p.DefaultAmbitProcessor<Target,Result> (implements net.idea.modbcum.i.processors.IProcessor<Target,Result>)
    • toxtree.tree.Reactor (implements toxTree.core.IImplementationDetails)
  • mutant.descriptors.DescriptorIDist (implements org.openscience.cdk.qsar.IMolecularDescriptor)
  • toxtree.plugins.ames.descriptors.DescriptorIDist (implements org.openscience.cdk.qsar.IMolecularDescriptor)
  • mutant.descriptors.DescriptorMolarRefractivity (implements org.openscience.cdk.qsar.IMolecularDescriptor)
  • toxtree.plugins.ames.descriptors.DescriptorMolarRefractivity (implements org.openscience.cdk.qsar.IMolecularDescriptor)
  • mutant.descriptors.DescriptorStructurePresence<T> (implements org.openscience.cdk.qsar.IMolecularDescriptor)
    • mutant.descriptors.DescriptorBridgedBiphenyl
    • mutant.descriptors.DescriptorHasNO2Group
    • mutant.descriptors.DescriptorIsAniline
  • toxtree.plugins.ames.descriptors.DescriptorStructurePresence<T> (implements org.openscience.cdk.qsar.IMolecularDescriptor)
    • toxtree.plugins.ames.descriptors.DescriptorBridgedBiphenyl
    • toxtree.plugins.ames.descriptors.DescriptorHasNO2Group
    • toxtree.plugins.ames.descriptors.DescriptorIsAniline
  • toxTree.ui.EditorFactory (implements toxTree.ui.IEditorFactory)
  • javax.swing.filechooser.FileFilter
    • toxTree.io.MolFileFilter
  • toxTree.io.batch.FileState (implements java.io.Serializable)
  • toxTree.query.FunctionalGroups
    • verhaar.query.FunctionalGroups
  • toxTree.tree.rules.InChILookupFile (implements toxTree.tree.rules.ILookupFile)
  • java.io.InputStream (implements java.io.Closeable)
    • java.io.ObjectInputStream (implements java.io.ObjectInput, java.io.ObjectStreamConstants)
      • toxTree.core.ToxTreeObjectInputStream
  • toxTree.core.Introspection
  • toxTree.qsar.LinearPreprocessor (implements toxTree.qsar.IDescriptorPreprocessor)
  • toxTree.tree.rules.LookupFile (implements toxTree.tree.rules.ILookupFile, java.io.Serializable)
  • toxTree.qsar.MatrixPreprocessor (implements toxTree.qsar.IDescriptorPreprocessor)
  • toxTree.query.metabolite.MetabolyteRecycler (implements java.beans.PropertyChangeListener)
  • toxTree.query.MolAnalyser
  • toxTree.data.MoleculesIterator (implements toxTree.core.IMoleculesIterator)
    • toxtree.data.FilteredMoleculesIterator (implements toxTree.core.IFilteredMolecules)
  • toxTree.query.MolFlags
  • java.util.Observable
    • toxTree.tree.AbstractRule (implements toxTree.core.IDecisionRule, toxTree.core.XMLSerializable)
      • toxTree.tree.AbstractRuleHilightHits
        • toxTree.tree.cramer.Rule3FuncGroups
        • toxTree.tree.rules.RuleCommonTerpene
          • toxTree.tree.cramer.RuleIsCommonTerpene
        • toxTree.tree.rules.RuleReadilyHydrolised
          • toxTree.tree.cramer.RuleReadilyHydrolysedMononuclear
            • toxTree.tree.cramer.RuleReadilyHydrolysed29
          • cramer2.rules.RuleReadilyHydrolysedPO4
          • toxTree.tree.cramer.RuleReadilyHydrolysedToCommonterpene
        • toxTree.tree.rules.RuleSubstructures (implements toxTree.core.IRuleSubstructures)
          • toxTree.tree.cramer.RuleAliphaticWithSomeFuncGroups
          • toxTree.tree.rules.RuleAllSubstructures
            • sicret.rules.RuleAcrylicAcids
          • toxTree.tree.rules.RuleAnySubstructure
            • sicret.rules.RuleAcidAnhydrides
            • verhaar.rules.helper.RuleAnySubstructureCounter (implements toxTree.tree.rules.IAlertCounter)
            • sicret.rules.RuleAromaticAmines
            • sicret.rules.RuleC10_C20AliphaticAlcohols
            • sicret.rules.RuleCarbamoylHalide
            • sicret.rules.RuleCatecholsResorcinolsHydroquinones
            • sicret.rules.RuleDi_Tri_Nitrobenzenes
            • sicret.rules.RuleHalonitrobenzene
            • toxTree.tree.cramer.RuleLactonesFusedOrUnsaturated
            • sicret.rules.RuleLactonesFusedOrUnsaturated
            • sicret.rules.RuleOandPQuinones
            • sicret.rules.RuleQuaternaryOrganicAmmoniumAndPhosphoniumSalts
            • sicret.rules.RuleTriAndTetraHalogenatedBenzenes
            • mic.rules.SA26 (implements toxTree.tree.rules.IAlertCounter)
          • toxTree.tree.rules.RuleCarbohydrate
            • toxTree.tree.cramer.RuleSimplyBranchedAliphaticHydrocarbon
          • verhaar.rules.RuleIonicGroups (implements toxTree.tree.rules.IAlertCounter)
          • toxtree.plugins.kroes.rules.RuleKroesFig1Q1
          • toxTree.tree.cramer.RuleLactoneOrCyclicDiester
          • toxTree.tree.rules.RuleOnlyAllowedSubstructures
            • toxTree.tree.cramer.Rule32
            • toxTree.tree.cramer.RuleHasOnlySaltSulphonateSulphate
            • cramer2.rules.RuleHasOnlySaltSulphonateSulphate
            • toxTree.tree.cramer.RuleMonocycloalkanoneEtc
            • verhaar.rules.helper.RuleOnlyAllowedSubstructuresCounter (implements toxTree.tree.rules.IAlertCounter)
              • verhaar.rules.Rule142
              • verhaar.rules.Rule161
          • toxTree.tree.rules.RuleRings
            • toxTree.tree.rules.RuleRingSubstituents
              • toxTree.tree.cramer.RuleOnlyFuncGroupsQ30
              • toxTree.tree.rules.RuleRingAllowedSubstituents
                • verhaar.rules.Rule143 (implements toxTree.tree.rules.IAlertCounter)
                  • verhaar.rules.Rule144
                • toxTree.tree.cramer.RuleCyclopropaneEtc
                • toxTree.tree.cramer.RuleMonocarbocyclic
                • verhaar.rules.RuleRingMainStrucSubstituents
                  • verhaar.rules.Rule21 (implements toxTree.tree.rules.IAlertCounter)
                    • verhaar.rules.Rule22
                    • verhaar.rules.Rule23
                    • verhaar.rules.Rule25
                • toxTree.tree.cramer.RuleSomeBenzeneDerivatives
              • toxTree.tree.rules.RuleRingOtherThanAllowedSubstituents
                • toxTree.tree.cramer.RuleHeterocyclicComplexSubstituents
                • toxTree.tree.cramer.RuleRingComplexSubstituents30
                  • toxTree.tree.cramer.RuleAcyclicAcetalEsterOfQ30
              • mutant.rules.SA20_nogen (implements toxTree.tree.rules.IAlertCounter)
        • toxTree.tree.cramer.RuleToxicFunctionalGroups
      • toxTree.tree.rules.smarts.AbstractRuleSmartSubstructure<T> (implements toxTree.tree.rules.smarts.IRuleSMARTSubstructures, ambit2.smarts.query.ISmartsPatternFactory)
        • toxTree.tree.rules.smarts.RuleSMARTSSubstructureAmbit
          • toxtree.plugins.kroes.rules.KroesRule3
          • verhaar.rules.Rule151
          • verhaar.rules.Rule152
          • verhaar.rules.Rule153
          • verhaar.rules.Rule154
          • verhaar.rules.Rule171
          • verhaar.rules.Rule24
          • verhaar.rules.Rule31
          • verhaar.rules.Rule32
          • verhaar.rules.Rule33
          • eye.rules.Rule33
          • verhaar.rules.Rule34
          • verhaar.rules.Rule35
          • verhaar.rules.Rule36
          • verhaar.rules.Rule37
          • verhaar.rules.Rule38
          • eye.rules.Rule39
          • structurefeatures.rules.RuleAlcohol
          • structurefeatures.rules.RuleAldehyde
          • toxtree.plugins.moa.rules.RuleAlertsNarcosis1_1_1
          • toxtree.plugins.moa.rules.RuleAlertsNarcosis1_1_1_1
          • toxtree.plugins.moa.rules.RuleAlertsNarcosis1_1_2_1
          • toxtree.plugins.moa.rules.RuleAlertsNarcosis1_1_2_3
          • structurefeatures.rules.RuleAlkylAldehyde
          • structurefeatures.rules.RuleAlkylHydrazine
          • structurefeatures.rules.RuleAlkylPhosphonate
          • structurefeatures.rules.RuleAmine
          • toxTree.tree.rules.RuleAromatic
            • toxTree.tree.cramer.RuleIsAromatic
            • mic.rules.SA18 (implements toxTree.tree.rules.IAlertCounter)
              • mic.rules.SA19
            • mutant.rules.SA18_gen (implements toxTree.tree.rules.IAlertCounter)
              • mutant.rules.SA19_gen
            • toxtree.plugins.ames.rules.SA18_gen (implements toxTree.tree.rules.IAlertCounter)
              • toxtree.plugins.ames.rules.SA19_gen
          • structurefeatures.rules.RuleAromaticAldehyde
          • mutant.rules.RuleAromaticAmineNoSulfonicGroup
          • toxtree.plugins.ames.rules.RuleAromaticAmineNoSulfonicGroup
          • structurefeatures.rules.RuleAromaticAzo
          • structurefeatures.rules.RuleAromaticNitro
          • structurefeatures.rules.RuleArylMethylHalide
          • structurefeatures.rules.RuleAziridine
          • structurefeatures.rules.RuleAzo
          • structurefeatures.rules.RuleBenzene
          • structurefeatures.rules.RuleEpoxide
          • structurefeatures.rules.RuleEther
          • cramer2.rules.RuleFreeABUnsaturatedHetero
          • structurefeatures.rules.RuleFuran
          • structurefeatures.rules.RuleHalide
          • toxTree.tree.cramer.RuleHeteroaromatic
            • toxtree.tree.cramer3.rules.RuleQ12
          • structurefeatures.rules.RuleHeterocycle
          • structurefeatures.rules.RuleHydrazine
          • structurefeatures.rules.RuleIminomethyl
          • structurefeatures.rules.RuleKetone
          • structurefeatures.rules.RuleNChloramine
          • structurefeatures.rules.RuleNHydroxy
          • structurefeatures.rules.RuleNitro
          • structurefeatures.rules.RuleNitrogenMustard
          • structurefeatures.rules.RuleNitrosamine
          • structurefeatures.rules.RuleNitroso
          • structurefeatures.rules.RuleNMethylol
          • structurefeatures.rules.RuleNOxide
          • structurefeatures.rules.RuleNucleosides
          • structurefeatures.rules.RulePhosphoricGroups
          • structurefeatures.rules.RuleprimaryAlkylHalide
          • structurefeatures.rules.RulePropiolactone
          • toxtree.tree.cramer3.rules.RuleQ10
          • toxtree.tree.cramer3.rules.RuleQ13
          • toxtree.tree.cramer3.rules.RuleQ15 (implements toxtree.tree.cramer3.rules.IRuleSMARTS)
          • toxtree.tree.cramer3.rules.RuleQ17 (implements toxtree.tree.cramer3.rules.IRuleSMARTS)
          • toxtree.tree.cramer3.rules.RuleQ19
          • toxtree.tree.cramer3.rules.RuleQ2 (implements toxtree.tree.cramer3.rules.IRuleSMARTS)
          • toxtree.tree.cramer3.rules.RuleQ20 (implements toxtree.tree.cramer3.rules.IRuleSMARTS)
          • toxtree.tree.cramer3.rules.RuleQ21
          • toxtree.tree.cramer3.rules.RuleQ22
          • toxtree.tree.cramer3.rules.RuleQ27
          • toxtree.tree.cramer3.rules.RuleQ28
          • toxtree.tree.cramer3.rules.RuleQ3 (implements toxtree.tree.cramer3.rules.IRuleSMARTS)
          • toxtree.tree.cramer3.rules.RuleQ4A (implements toxtree.tree.cramer3.rules.IRuleSMARTS)
          • toxtree.tree.cramer3.rules.RuleQ5 (implements toxtree.tree.cramer3.rules.IRuleSMARTS)
          • toxtree.tree.cramer3.rules.RuleQ9_A
          • toxtree.tree.cramer3.rules.RuleQ9_B
          • toxtree.tree.cramer3.rules.RuleRingsSMARTSSubstituents
            • toxtree.tree.cramer3.rules.RuleQ11 (implements toxtree.tree.cramer3.rules.IRuleSMARTS)
            • toxtree.tree.cramer3.rules.RuleQ14_A
            • toxtree.tree.cramer3.rules.RuleQ14_B (implements toxtree.tree.cramer3.rules.IRuleSMARTS)
            • toxtree.tree.cramer3.rules.RuleQ25 (implements toxtree.tree.cramer3.rules.IRuleSMARTS)
            • toxtree.tree.cramer3.rules.RuleQ26 (implements toxtree.tree.cramer3.rules.IRuleSMARTS)
          • toxtree.tree.cramer3.rules.RuleSMARTSSubstructureHydrolysis (implements toxtree.tree.cramer3.rules.IRuleSMARTS)
            • toxtree.tree.cramer3.rules.RuleLactone
              • toxtree.tree.cramer3.rules.RuleQ9_C
              • toxtree.tree.cramer3.rules.RuleQ9_D
            • toxtree.tree.cramer3.rules.RuleQ1 (implements toxtree.tree.cramer3.rules.IRuleSMARTS)
            • toxtree.tree.cramer3.rules.RuleQ29
            • toxtree.tree.cramer3.rules.RuleQ8
          • toxtree.tree.cramer3.rules.RuleSMARTSSubstructureTagged
            • toxtree.tree.cramer3.rules.RuleQ16 (implements toxtree.tree.cramer3.rules.IRuleSMARTS)
            • toxtree.tree.cramer3.rules.RuleQ18_AI (implements toxtree.tree.cramer3.rules.IRuleSMARTS)
            • toxtree.tree.cramer3.rules.RuleQ18_JM (implements toxtree.tree.cramer3.rules.IRuleSMARTS)
            • toxtree.tree.cramer3.rules.RuleQ4
            • toxtree.tree.cramer3.rules.RuleQ6 (implements toxTree.core.IImplementationDetails)
          • toxTree.tree.rules.smarts.RuleSMARTSubstructure
            • eye.rules.Rule22
            • sicret.rules.RuleA_Lactams
            • sicret.rules.RuleAcidImides
            • sicret.rules.RuleAcrylicAndMethacrylicEsters
            • com.molecularnetworks.start.rules.RuleAlcohols
            • com.molecularnetworks.start.rules.RuleAldehyde
            • sicret.rules.RuleAldehydes
            • com.molecularnetworks.start.rules.RuleAliphaticCyclicNoBranches
            • com.molecularnetworks.start.rules.RuleAliphaticEther
            • com.molecularnetworks.start.rules.RuleAliphaticFusedRingsNonBranched
            • sicret.rules.RuleAliphaticSaturatedAcidsAndHalogenatedAcids
            • sicret.rules.RuleAlkylAlkanolAmines
            • sicret.rules.RuleAlphaAlkynes
            • sicret.rules.RuleAlphaHalogenatedAmidesAndThioamides
            • com.molecularnetworks.start.rules.RuleAlyphaticSulphonicAcids
            • com.molecularnetworks.start.rules.RuleAminoAcids
            • com.molecularnetworks.start.rules.RuleAromaticHalogen
            • com.molecularnetworks.start.rules.RuleAromaticNGroups
            • com.molecularnetworks.start.rules.RuleAromaticSulphonicAcid
            • com.molecularnetworks.start.rules.RuleAzoGroup
            • cramer2.rules.RuleBenzeneAnalogues
            • sicret.rules.RuleBenzylHalides
            • sicret.rules.RuleBetaLactones
            • com.molecularnetworks.start.rules.RuleCyanoGroupOnMoreThanEightAtomsChain
            • cramer2.rules.RuleDivalentSulphur
            • com.molecularnetworks.start.rules.RuleEpoxide
            • sicret.rules.RuleEpoxides
            • com.molecularnetworks.start.rules.RuleEsters
            • sicret.rules.RuleEthyleneGlycolEthers
            • com.molecularnetworks.start.rules.RuleFormaldehyde
            • sicret.rules.RuleHalogenatedAlkanesAndAlkenes
            • com.molecularnetworks.start.rules.RuleHalogenSubstitutedBranched
            • sicret.rules.RuleHydroPeroxides
            • sicret.rules.RuleKetenes
            • com.molecularnetworks.start.rules.RuleKetone
            • sicret.rules.RuleKetones
            • com.molecularnetworks.start.rules.RuleMoreThanTwoHydroxyOnAromaticRing
            • com.molecularnetworks.start.rules.RuleNitrile
            • com.molecularnetworks.start.rules.RuleNNitroso
            • com.molecularnetworks.start.rules.RuleOneHalogenOnUnbranched
            • com.molecularnetworks.start.rules.RulePhosphateEsters
            • com.molecularnetworks.start.rules.RulePyridineRing
            • com.molecularnetworks.start.rules.RuleTerminalIsopropylNonCyclic
            • com.molecularnetworks.start.rules.RuleTerminalTertButyl
            • com.molecularnetworks.start.rules.RuleTertiaryAmine
            • com.molecularnetworks.start.rules.RuleTriazineRing
            • com.molecularnetworks.start.rules.RuleTrifluoromethyl
            • com.molecularnetworks.start.rules.RuleTwoHalogensOnUnbranchedNonCyclic
            • com.molecularnetworks.start.rules.RuleTwoTerminalDiaminoGroupsOnNonCyclic
            • com.molecularnetworks.start.rules.RuleTwoTerminalDoubleBondsOnUnbranched
          • cramer2.rules.RuleUnchargedOrganophosphates
            • toxtree.plugins.kroes.rules.KroesRule6
          • structurefeatures.rules.RuleUrethaneDerivatives
          • toxTree.tree.rules.StructureAlert (implements toxTree.tree.rules.IAlertCounter)
            • toxtree.plugins.dnabinding.rules.DNABindingRule
              • toxtree.plugins.dnabinding.rules.AcylTransferRule
              • toxtree.plugins.dnabinding.rules.MichaelAcceptorRule
              • toxtree.plugins.dnabinding.rules.ShiffBaseRule
              • toxtree.plugins.dnabinding.rules.SN1Rule
              • toxtree.plugins.dnabinding.rules.SN2Rule
            • toxtree.plugins.func.rules.FG
              • toxtree.plugins.func.rules.FG10
              • toxtree.plugins.func.rules.FG11
              • toxtree.plugins.func.rules.FG12
              • toxtree.plugins.func.rules.FG13
              • toxtree.plugins.func.rules.FG14
              • toxtree.plugins.func.rules.FG15
              • toxtree.plugins.func.rules.FG16
              • toxtree.plugins.func.rules.FG17
              • toxtree.plugins.func.rules.FG18
              • toxtree.plugins.func.rules.FG19
              • toxtree.plugins.func.rules.FG2
              • toxtree.plugins.func.rules.FG20
              • toxtree.plugins.func.rules.FG21
              • toxtree.plugins.func.rules.FG22
              • toxtree.plugins.func.rules.FG23_1
              • toxtree.plugins.func.rules.FG23_2
              • toxtree.plugins.func.rules.FG23_3
              • toxtree.plugins.func.rules.FG23_4
              • toxtree.plugins.func.rules.FG23_5
              • toxtree.plugins.func.rules.FG23_6
              • toxtree.plugins.func.rules.FG23_7
              • toxtree.plugins.func.rules.FG23_8
              • toxtree.plugins.func.rules.FG23_LS
              • toxtree.plugins.func.rules.FG24_1
              • toxtree.plugins.func.rules.FG24_2
              • toxtree.plugins.func.rules.FG24_3
              • toxtree.plugins.func.rules.FG24_LS
              • toxtree.plugins.func.rules.FG25
              • toxtree.plugins.func.rules.FG26
              • toxtree.plugins.func.rules.FG27
              • toxtree.plugins.func.rules.FG28
              • toxtree.plugins.func.rules.FG29
              • toxtree.plugins.func.rules.FG3_1
              • toxtree.plugins.func.rules.FG3_2
              • toxtree.plugins.func.rules.FG3_LS
              • toxtree.plugins.func.rules.FG30
              • toxtree.plugins.func.rules.FG31_1
              • toxtree.plugins.func.rules.FG31_2
              • toxtree.plugins.func.rules.FG31_3
              • toxtree.plugins.func.rules.FG31_4
              • toxtree.plugins.func.rules.FG31_5
              • toxtree.plugins.func.rules.FG31_6
              • toxtree.plugins.func.rules.FG31_7
              • toxtree.plugins.func.rules.FG31_8
              • toxtree.plugins.func.rules.FG31_9
              • toxtree.plugins.func.rules.FG31_LS
              • toxtree.plugins.func.rules.FG32
              • toxtree.plugins.func.rules.FG33_1
              • toxtree.plugins.func.rules.FG33_2
              • toxtree.plugins.func.rules.FG33_3
              • toxtree.plugins.func.rules.FG33_4
              • toxtree.plugins.func.rules.FG33_5
              • toxtree.plugins.func.rules.FG33_6
              • toxtree.plugins.func.rules.FG33_7
              • toxtree.plugins.func.rules.FG33_8
              • toxtree.plugins.func.rules.FG33_LS
              • toxtree.plugins.func.rules.FG34_1
              • toxtree.plugins.func.rules.FG34_2
              • toxtree.plugins.func.rules.FG34_LS
              • toxtree.plugins.func.rules.FG35_1
              • toxtree.plugins.func.rules.FG35_10
              • toxtree.plugins.func.rules.FG35_11
              • toxtree.plugins.func.rules.FG35_12
              • toxtree.plugins.func.rules.FG35_13
              • toxtree.plugins.func.rules.FG35_2
              • toxtree.plugins.func.rules.FG35_3
              • toxtree.plugins.func.rules.FG35_4
              • toxtree.plugins.func.rules.FG35_5
              • toxtree.plugins.func.rules.FG35_6
              • toxtree.plugins.func.rules.FG35_7
              • toxtree.plugins.func.rules.FG35_8
              • toxtree.plugins.func.rules.FG35_9
              • toxtree.plugins.func.rules.FG35_LS
              • toxtree.plugins.func.rules.FG36
              • toxtree.plugins.func.rules.FG37_1
              • toxtree.plugins.func.rules.FG37_2
              • toxtree.plugins.func.rules.FG37_3
              • toxtree.plugins.func.rules.FG37_4
              • toxtree.plugins.func.rules.FG37_LS
              • toxtree.plugins.func.rules.FG38
              • toxtree.plugins.func.rules.FG39
              • toxtree.plugins.func.rules.FG4
              • toxtree.plugins.func.rules.FG4_1
              • toxtree.plugins.func.rules.FG4_2
              • toxtree.plugins.func.rules.FG4_LS
              • toxtree.plugins.func.rules.FG40
              • toxtree.plugins.func.rules.FG41_1
              • toxtree.plugins.func.rules.FG41_2
              • toxtree.plugins.func.rules.FG41_3
              • toxtree.plugins.func.rules.FG41_4
              • toxtree.plugins.func.rules.FG41_5
              • toxtree.plugins.func.rules.FG41_LS
              • toxtree.plugins.func.rules.FG42
              • toxtree.plugins.func.rules.FG43
              • toxtree.plugins.func.rules.FG44
              • toxtree.plugins.func.rules.FG45
              • toxtree.plugins.func.rules.FG46_1
              • toxtree.plugins.func.rules.FG46_2
              • toxtree.plugins.func.rules.FG46_LS
              • toxtree.plugins.func.rules.FG47
              • toxtree.plugins.func.rules.FG48_1
              • toxtree.plugins.func.rules.FG48_2
              • toxtree.plugins.func.rules.FG48_LS
              • toxtree.plugins.func.rules.FG49
              • toxtree.plugins.func.rules.FG5
              • toxtree.plugins.func.rules.FG50_1
              • toxtree.plugins.func.rules.FG50_2
              • toxtree.plugins.func.rules.FG50_3
              • toxtree.plugins.func.rules.FG50_LS
              • toxtree.plugins.func.rules.FG51_1
              • toxtree.plugins.func.rules.FG51_2
              • toxtree.plugins.func.rules.FG51_3
              • toxtree.plugins.func.rules.FG51_LS
              • toxtree.plugins.func.rules.FG52_1
              • toxtree.plugins.func.rules.FG52_2
              • toxtree.plugins.func.rules.FG52_3
              • toxtree.plugins.func.rules.FG52_LS
              • toxtree.plugins.func.rules.FG53_1
              • toxtree.plugins.func.rules.FG53_2
              • toxtree.plugins.func.rules.FG53_3
              • toxtree.plugins.func.rules.FG53_LS
              • toxtree.plugins.func.rules.FG54
              • toxtree.plugins.func.rules.FG55
              • toxtree.plugins.func.rules.FG56
              • toxtree.plugins.func.rules.FG57
              • toxtree.plugins.func.rules.FG58
              • toxtree.plugins.func.rules.FG59
              • toxtree.plugins.func.rules.FG6
              • toxtree.plugins.func.rules.FG60
              • toxtree.plugins.func.rules.FG61
              • toxtree.plugins.func.rules.FG62
              • toxtree.plugins.func.rules.FG63
              • toxtree.plugins.func.rules.FG64
              • toxtree.plugins.func.rules.FG65
              • toxtree.plugins.func.rules.FG66
              • toxtree.plugins.func.rules.FG67
              • toxtree.plugins.func.rules.FG68
              • toxtree.plugins.func.rules.FG69
              • toxtree.plugins.func.rules.FG7
              • toxtree.plugins.func.rules.FG70
              • toxtree.plugins.func.rules.FG71
              • toxtree.plugins.func.rules.FG72
              • toxtree.plugins.func.rules.FG73
              • toxtree.plugins.func.rules.FG74_1
              • toxtree.plugins.func.rules.FG74_2
              • toxtree.plugins.func.rules.FG74_3
              • toxtree.plugins.func.rules.FG74_4
              • toxtree.plugins.func.rules.FG74_5
              • toxtree.plugins.func.rules.FG74_6
              • toxtree.plugins.func.rules.FG74_7
              • toxtree.plugins.func.rules.FG74_LS
              • toxtree.plugins.func.rules.FG75_1
              • toxtree.plugins.func.rules.FG75_2
              • toxtree.plugins.func.rules.FG75_3
              • toxtree.plugins.func.rules.FG75_4
              • toxtree.plugins.func.rules.FG75_LS
              • toxtree.plugins.func.rules.FG76
              • toxtree.plugins.func.rules.FG77
              • toxtree.plugins.func.rules.FG78_1
              • toxtree.plugins.func.rules.FG78_2
              • toxtree.plugins.func.rules.FG78_3
              • toxtree.plugins.func.rules.FG78_4
              • toxtree.plugins.func.rules.FG78_LS
              • toxtree.plugins.func.rules.FG79_1
              • toxtree.plugins.func.rules.FG79_2
              • toxtree.plugins.func.rules.FG79_3
              • toxtree.plugins.func.rules.FG79_4
              • toxtree.plugins.func.rules.FG79_LS
              • toxtree.plugins.func.rules.FG8
              • toxtree.plugins.func.rules.FG80_1
              • toxtree.plugins.func.rules.FG80_2
              • toxtree.plugins.func.rules.FG80_LS
              • toxtree.plugins.func.rules.FG81_1
              • toxtree.plugins.func.rules.FG81_2
              • toxtree.plugins.func.rules.FG81_3
              • toxtree.plugins.func.rules.FG81_4
              • toxtree.plugins.func.rules.FG81_LS
              • toxtree.plugins.func.rules.FG82_1
              • toxtree.plugins.func.rules.FG82_2
              • toxtree.plugins.func.rules.FG82_3
              • toxtree.plugins.func.rules.FG82_4
              • toxtree.plugins.func.rules.FG82_LS
              • toxtree.plugins.func.rules.FG83_1
              • toxtree.plugins.func.rules.FG83_2
              • toxtree.plugins.func.rules.FG83_3
              • toxtree.plugins.func.rules.FG83_4
              • toxtree.plugins.func.rules.FG83_LS
              • toxtree.plugins.func.rules.FG84_1
              • toxtree.plugins.func.rules.FG84_2
              • toxtree.plugins.func.rules.FG84_LS
              • toxtree.plugins.func.rules.FG85
              • toxtree.plugins.func.rules.FG86
              • toxtree.plugins.func.rules.FG87
              • toxtree.plugins.func.rules.FG88
              • toxtree.plugins.func.rules.FG89
              • toxtree.plugins.func.rules.FG9
              • toxtree.plugins.func.rules.FG90
            • mic.rules.PB29
            • mic.rules.PB30
            • toxtree.plugins.proteinbinding.rules.ProteinBindingRule
              • toxtree.plugins.proteinbinding.rules.AcylTransferRule
              • toxtree.plugins.proteinbinding.rules.MichaelAcceptorRule
              • toxtree.plugins.proteinbinding.rules.ShiffBaseRule
              • toxtree.plugins.proteinbinding.rules.SN2Rule
              • toxtree.plugins.proteinbinding.rules.SNARRule
            • verhaar.rules.Rule4
            • mic.rules.SA12
            • mutant.rules.SA12_gen
            • toxtree.plugins.ames.rules.SA12_gen
            • mic.rules.SA14
            • mutant.rules.SA14_gen
            • toxtree.plugins.ames.rules.SA14_gen
            • mic.rules.SA15
            • mutant.rules.SA15_gen
            • toxtree.plugins.ames.rules.SA15_gen
            • mic.rules.SA16
            • mutant.rules.SA16_gen
            • toxtree.plugins.ames.rules.SA16_gen
            • mic.rules.SA21
            • mutant.rules.SA21_gen
            • toxtree.plugins.ames.rules.SA21_gen
            • mic.rules.SA3
            • mutant.rules.SA3_gen
            • toxtree.plugins.ames.rules.SA3_gen
            • mic.rules.SA30
            • mutant.rules.SA30_gen
            • toxtree.plugins.ames.rules.SA30_gen
            • mutant.rules.SA31b_nogen
            • mutant.rules.SA31c_nogen
            • mic.rules.SA32
            • mic.rules.SA33
            • mic.rules.SA34
            • mic.rules.SA35
            • mic.rules.SA36
            • mic.rules.SA5
            • mutant.rules.SA5_gen
            • toxtree.plugins.ames.rules.SA5_gen
            • mic.rules.SA6
            • mutant.rules.SA6_gen
            • toxtree.plugins.ames.rules.SA6_gen
            • mic.rules.SA7
            • mutant.rules.SA7_gen
            • toxtree.plugins.ames.rules.SA7_gen
            • mic.rules.SA8
            • mutant.rules.SA8_gen
            • toxtree.plugins.ames.rules.SA8_gen
            • mic.rules.SA9
            • mutant.rules.SA9_gen
            • toxtree.plugins.ames.rules.SA9_gen
            • toxtree.plugins.skinsensitisation.rules.SkinSensitisationRule
              • toxtree.plugins.skinsensitisation.rules.AcylTransferRule
              • toxtree.plugins.skinsensitisation.rules.MichaelAcceptorRule
              • toxtree.plugins.skinsensitisation.rules.ShiffBaseRule
              • toxtree.plugins.skinsensitisation.rules.SN2Rule
              • toxtree.plugins.skinsensitisation.rules.SNARRule
          • toxTree.tree.rules.StructureAlertAmbit (implements toxTree.tree.rules.IAlertCounter)
            • michaelacceptors.rules.Rule1
            • michaelacceptors.rules.Rule10A
            • michaelacceptors.rules.Rule10B
            • michaelacceptors.rules.Rule11
            • michaelacceptors.rules.Rule12A
            • michaelacceptors.rules.Rule12B
            • michaelacceptors.rules.Rule13A
            • michaelacceptors.rules.Rule13B
            • michaelacceptors.rules.Rule14
            • michaelacceptors.rules.Rule2
            • michaelacceptors.rules.Rule3
            • michaelacceptors.rules.Rule4A
            • michaelacceptors.rules.Rule4B
            • michaelacceptors.rules.Rule5
            • michaelacceptors.rules.Rule6
            • michaelacceptors.rules.Rule7
            • michaelacceptors.rules.Rule8
            • michaelacceptors.rules.Rule9A
            • michaelacceptors.rules.Rule9B
            • mutant.rules.SA26_gen
            • toxtree.plugins.ames.rules.SA26_gen
            • mutant.rules.SA28_gen
            • toxtree.plugins.ames.rules.SA28_gen
        • toxTree.tree.rules.smarts.RuleSMARTSubstructureCDK
          • mutant.rules.QSAR6Applicable (implements toxTree.core.IDecisionInteractive)
          • toxtree.plugins.ames.rules.QSAR6Applicable (implements toxTree.core.IDecisionInteractive)
          • eye.rules.Rule14Aliphatic_glycerol_monoethers
          • eye.rules.Rule15
          • eye.rules.Rule16
          • eye.rules.Rule17
          • eye.rules.Rule18
          • eye.rules.Rule19
          • eye.rules.Rule20
          • eye.rules.Rule21
          • eye.rules.Rule23
          • eye.rules.Rule24
          • eye.rules.Rule25
          • eye.rules.Rule26
          • eye.rules.Rule27
          • eye.rules.Rule28
          • eye.rules.Rule29
          • eye.rules.Rule31
          • eye.rules.Rule32
          • eye.rules.Rule34
          • eye.rules.Rule35
          • eye.rules.Rule36
          • eye.rules.Rule37
          • mutant.rules.RuleABUnsaturatedAldehyde
          • toxtree.plugins.ames.rules.RuleABUnsaturatedAldehyde
          • mutant.rules.RuleAromaticDiazo
          • toxtree.plugins.ames.rules.RuleAromaticDiazo
          • mutant.rules.RuleDerivedAromaticAmines
          • toxtree.plugins.ames.rules.RuleDerivedAromaticAmines
          • sicret.rules.RulePhenols
          • toxTree.tree.rules.StructureAlertCDK (implements toxTree.tree.rules.IAlertCounter)
            • toxtree.plugins.func.rules.FG1
            • mic.rules.SA1
            • mutant.rules.SA1_gen
            • toxtree.plugins.ames.rules.SA1_gen
            • mic.rules.SA10
            • mutant.rules.SA10_gen
            • toxtree.plugins.ames.rules.SA10_gen
            • mic.rules.SA11
            • mutant.rules.SA11_gen
            • toxtree.plugins.ames.rules.SA11_gen
            • mic.rules.SA13
            • mutant.rules.SA13_gen
            • toxtree.plugins.ames.rules.SA13_gen
            • mutant.rules.SA17_nogen
            • mic.rules.SA2
            • mutant.rules.SA2_gen
            • toxtree.plugins.ames.rules.SA2_gen
            • mic.rules.SA22
            • mutant.rules.SA22_gen
            • toxtree.plugins.ames.rules.SA22_gen
            • mic.rules.SA23
            • mutant.rules.SA23_gen
            • toxtree.plugins.ames.rules.SA23_gen
            • mic.rules.SA24
            • mutant.rules.SA24_gen
            • toxtree.plugins.ames.rules.SA24_gen
            • mic.rules.SA25
            • mutant.rules.SA25_gen
            • toxtree.plugins.ames.rules.SA25_gen
            • mic.rules.SA27
            • mutant.rules.SA27_gen
            • toxtree.plugins.ames.rules.SA27_gen
            • mic.rules.SA28
            • mic.rules.SA28bis
            • mutant.rules.SA28bis_gen
            • toxtree.plugins.ames.rules.SA28bis_gen
            • mic.rules.SA28ter
            • mutant.rules.SA28ter_gen
            • toxtree.plugins.ames.rules.SA28ter_gen
            • mic.rules.SA29
            • mutant.rules.SA29_gen
            • toxtree.plugins.ames.rules.SA29_gen
            • mutant.rules.SA31a_nogen
            • mutant.rules.SA37_gen
            • toxtree.plugins.ames.rules.SA37_gen
            • mutant.rules.SA38_gen
            • toxtree.plugins.ames.rules.SA38_gen
            • mutant.rules.SA39_gen_and_nogen
            • toxtree.plugins.ames.rules.SA39_gen_and_nogen
            • mic.rules.SA4
            • mutant.rules.SA4_gen
            • toxtree.plugins.ames.rules.SA4_gen
            • mutant.rules.SA40_nogen
            • mutant.rules.SA41_nogen
            • mutant.rules.SA42_nogen
            • mutant.rules.SA43_nogen
            • mutant.rules.SA44_nogen
            • mutant.rules.SA45_nogen
            • mutant.rules.SA46_nogen
            • mutant.rules.SA47_nogen
            • mutant.rules.SA48_nogen
            • mutant.rules.SA49_nogen
            • mutant.rules.SA50_nogen
            • mutant.rules.SA51_nogen
            • mutant.rules.SA52_nogen
            • mutant.rules.SA53_nogen
            • mutant.rules.SA54_nogen
            • mutant.rules.SA55_nogen
            • mutant.rules.SA56_nogen
            • toxtree.plugins.ames.rules.SA57_Ames
            • toxtree.plugins.ames.rules.SA58_Ames
            • toxtree.plugins.ames.rules.SA59_Ames
            • toxtree.plugins.ames.rules.SA60_Ames
            • toxtree.plugins.ames.rules.SA61_Ames
            • toxtree.plugins.ames.rules.SA62_Ames
            • toxtree.plugins.ames.rules.SA63_Ames
            • toxtree.plugins.ames.rules.SA64_Ames
            • toxtree.plugins.ames.rules.SA65_Ames
            • toxtree.plugins.ames.rules.SA66_Ames
            • toxtree.plugins.ames.rules.SA67_Ames
            • toxtree.plugins.ames.rules.SA68_Ames
            • toxtree.plugins.ames.rules.SA69_Ames
      • toxtree.plugins.search.rules.Find
      • toxtree.plugins.kroes.rules.KroesRule8
        • toxtree.plugins.kroes.rules.KroesRule10
      • toxTree.qsar.LinearDiscriminantRule (implements toxTree.core.IDescriptorBased, toxTree.core.IImplementationDetails)
        • mutant.rules.RuleDACancerogenicityAromaticAmines
        • mutant.rules.RuleDAMutagenicityABUnsaturatedAldehydes
        • toxtree.plugins.ames.rules.RuleDAMutagenicityABUnsaturatedAldehydes
        • mutant.rules.RuleDAMutagenicityAromaticAmines
        • toxtree.plugins.ames.rules.RuleDAMutagenicityAromaticAmines
      • toxtree.plugins.smartcyp.rules.MetaboliteGenerator (implements ambit2.smarts.IAcceptable, toxTree.core.IMetaboliteGenerator)
        • toxtree.plugins.smartcyp.rules.SMARTCYPRuleRank1
          • toxtree.plugins.smartcyp.rules.SMARTCYPRuleHigherRank
          • toxtree.plugins.smartcyp.rules.SMARTCYPRuleRank2
          • toxtree.plugins.smartcyp.rules.SMARTCYPRuleRank3
      • eye.rules.Rule13_AliphaticMonoalcohols
        • eye.rules.Rule30
        • eye.rules.Rule38
      • toxTree.tree.cramer.Rule3MemberedHeterocycle
      • toxTree.tree.rules.RuleAnySubstituents
        • toxTree.tree.cramer.RuleRingsWithSubstituents
          • toxtree.tree.cramer3.rules.RuleQ23 (implements toxTree.core.IImplementationDetails)
        • toxTree.tree.cramer.RuleRingWithSubstituents
      • toxTree.tree.rules.RuleDescriptor
        • toxTree.tree.rules.RuleDescriptorRange (implements toxTree.core.IRuleRange)
          • toxtree.plugins.lewis.rules.Rule_high_AreaDepthRatio
            • toxtree.plugins.lewis.rules.Rule_areadepthratio
          • toxtree.plugins.lewis.rules.Rule_high_pKa
          • toxtree.plugins.lewis.rules.Rule_highLogP
          • toxtree.plugins.lewis.rules.Rule_highVolume
            • toxtree.plugins.lewis.rules.Rule_volume
          • toxtree.plugins.lewis.rules.Rule_lowVolume
          • verhaar.rules.RuleLogPRange (implements toxTree.tree.rules.IAlertCounter)
          • toxTree.tree.rules.RuleMolecularMassRange
            • verhaar.rules.Rule03 (implements toxTree.tree.rules.IAlertCounter)
        • toxTree.tree.rules.RuleLipinski5
      • toxTree.tree.rules.RuleElements
        • toxTree.tree.rules.RuleAllAllowedElements
          • sicret.rules.RuleHasOnlyC_H_O
            • eye.rules.RuleHasOnlyC_H_O
          • sicret.rules.RuleHasOnlyC_H_O_Halogen
            • eye.rules.RuleHasOnlyC_H_O_Halogen
          • sicret.rules.RuleHasOnlyC_H_O_N
            • eye.rules.RuleHasOnlyC_H_O_N
          • sicret.rules.RuleHasOnlyC_H_O_N_Halogen
            • eye.rules.RuleHasOnlyC_H_O_N_Halogen
          • sicret.rules.RuleHasOnlyC_H_O_N_S
            • eye.rules.RuleHasOnlyC_H_O_N_S
        • verhaar.rules.helper.RuleElementsCounter (implements toxTree.tree.rules.IAlertCounter)
          • verhaar.rules.Rule01
          • verhaar.rules.Rule11
          • verhaar.rules.Rule13
          • verhaar.rules.Rule14
          • verhaar.rules.Rule15
          • verhaar.rules.Rule16
          • verhaar.rules.Rule17
        • toxTree.tree.cramer.RuleHasOtherThanC_H_O_N_S2
      • toxTree.tree.rules.RuleHeterocyclic
        • toxTree.tree.cramer.RuleIsHeterocyclic
        • toxtree.tree.cramer3.rules.RuleQ7 (implements toxTree.core.IImplementationDetails)
      • toxTree.tree.cramer.RuleKetoneAlcoholEtc
      • toxTree.tree.rules.RuleManyAromaticRings (implements toxTree.core.IRuleRange)
        • toxTree.tree.cramer.RuleManyAromaticRings14
        • toxTree.tree.cramer.RuleManyAromaticRings28
          • toxtree.tree.cramer3.rules.RuleQ24 (implements toxTree.core.IImplementationDetails)
      • toxTree.tree.rules.RuleOpenChain
        • toxTree.tree.cramer.RuleIsOpenChain
          • verhaar.rules.Rule141 (implements toxTree.tree.rules.IAlertCounter)
      • toxTree.tree.rules.RuleStructuresList
        • toxTree.tree.cramer.RuleCommonComponentOfFood
        • toxTree.tree.cramer.RuleNormalBodyConstituent
        • cramer2.rules.RuleNormalBodyConstituent
      • toxTree.tree.cramer.RuleSufficientSulphonateGroups
      • com.molecularnetworks.start.rules.RuleTwoOrMoreRings
      • toxTree.tree.rules.RuleVerifyProperty (implements toxTree.core.IDecisionInteractive, toxTree.core.IImplementationDetails)
        • sicret.rules.RuleAqueousSolubility
          • sicret.rules.Rule15
          • sicret.rules.Rule18
          • sicret.rules.Rule23
          • eye.rules.RuleAqueousSolubility
            • eye.rules.RuleAqueousSolubility_8_3
            • eye.rules.RuleAqueousSolubility_8_4
            • eye.rules.RuleAqueousSolubility1
          • eye.rules.RuleAqueousSolubility_10_2
          • eye.rules.RuleAqueousSolubility_10_5
          • eye.rules.RuleAqueousSolubility_11_7
          • eye.rules.RuleAqueousSolubility_9_3
        • toxTree.tree.rules.RuleInitAlertCounter
          • toxtree.plugins.moa.rules.RuleAlertsAche
          • toxtree.plugins.ames.rules.RuleAlertsAmes
          • verhaar.rules.RuleAlertsClass1
          • verhaar.rules.RuleAlertsClass2
          • verhaar.rules.RuleAlertsClass3
          • toxtree.plugins.moa.rules.RuleAlertsCNS
          • toxtree.plugins.ames.rules.RuleAlertsForAmesMutagenicity
          • mutant.rules.RuleAlertsForCarcinogenicity
          • toxtree.plugins.func.rules.RuleAlertsForFunc
          • mutant.rules.RuleAlertsForGenotoxicCarcinogenicity
          • toxtree.plugins.ames.rules.RuleAlertsForGenotoxicCarcinogenicity
          • mic.rules.RuleAlertsForMIC
          • toxtree.plugins.ames.rules.RuleAlertsForNewAmesMutagenicity
          • toxtree.plugins.moa.rules.RuleAlertsNarcosis2_2_1
          • toxtree.plugins.moa.rules.RuleAlertsNarcosis3
          • mutant.rules.RuleAlertsNongenotoxicCarcinogenicity
          • toxtree.plugins.moa.rules.RuleAlertsReactive
          • toxtree.plugins.moa.rules.RuleAlertsUncouplers
          • toxtree.plugins.dnabinding.rules.RuleDNABindingAlerts
          • toxtree.plugins.proteinbinding.rules.RuleProteinBindingAlerts
          • toxtree.plugins.skinsensitisation.rules.RuleSkinSensitisationAlerts
          • toxTree.tree.rules.RuleVerifyAlertsCounter
            • toxtree.plugins.kroes.rules.KroesRule2
            • verhaar.rules.RuleVerifyClass1Alerts
            • verhaar.rules.RuleVerifyClass2Alerts
            • verhaar.rules.RuleVerifyClass3Alerts
            • toxtree.plugins.moa.rules.VerifyAlertsAche
            • toxtree.plugins.ames.rules.VerifyAlertsAmes
            • toxtree.plugins.moa.rules.VerifyAlertsCNS
            • toxtree.plugins.dnabinding.rules.VerifyAlertsDNABinding
            • mutant.rules.VerifyAlertsGenotoxic
            • toxtree.plugins.ames.rules.VerifyAlertsGenotoxic
            • toxtree.plugins.moa.rules.VerifyAlertsNarcosis1
            • toxtree.plugins.moa.rules.VerifyAlertsNarcosis2
            • toxtree.plugins.moa.rules.VerifyAlertsNarcosis3
            • toxtree.plugins.ames.rules.VerifyAlertsNewAmes
            • mutant.rules.VerifyAlertsNongenotoxic
            • toxtree.plugins.ames.rules.VerifyAlertsNongenotoxic
            • toxtree.plugins.proteinbinding.rules.VerifyAlertsProteinBinding
            • toxtree.plugins.moa.rules.VerifyAlertsReactive
            • toxtree.plugins.skinsensitisation.rules.VerifyAlertsSkinSensitisation
            • toxtree.plugins.moa.rules.VerifyAlertsUncouplers
        • sicret.rules.RuleLipidSolubility
          • sicret.rules.Rule20
          • sicret.rules.Rule22
          • sicret.rules.Rule8
          • eye.rules.RuleLipidSolubility
            • eye.rules.RuleLipidSolubility_9_1
          • eye.rules.RuleLipidSolubility_10_4
        • sicret.rules.RuleLogP
          • sicret.rules.Rule11
          • sicret.rules.Rule16
          • sicret.rules.Rule17
          • sicret.rules.Rule28
          • eye.rules.RuleLogP
          • eye.rules.RuleLogP_10_1
          • eye.rules.RuleLogP_11_4
          • eye.rules.RuleLogP_11_5
          • eye.rules.RuleLogP_11_6
          • eye.rules.RuleLogP_12_4
          • eye.rules.RuleLogP_9_4
          • eye.rules.RuleLogP1
        • sicret.rules.RuleMeltingPoint
          • eye.rules.Rule1
          • sicret.rules.Rule14
          • sicret.rules.Rule25
          • sicret.rules.Rule27
          • sicret.rules.Rule4
          • eye.rules.RuleMelting_Point_11_3
          • eye.rules.RuleMeltingPoint_11_2
          • eye.rules.RuleMeltingPoint_12_3
          • eye.rules.RuleMeltingPoint_8_1
        • sicret.rules.RuleMolWeight
          • sicret.rules.Rule13
          • sicret.rules.Rule19
          • sicret.rules.Rule21
          • sicret.rules.Rule24
          • sicret.rules.Rule29
          • sicret.rules.Rule30
          • sicret.rules.Rule9
          • eye.rules.RuleMolWeight
            • eye.rules.RuleMolWeight_8_2
          • eye.rules.RuleMolWeight_10_3
          • eye.rules.RuleMolWeight_11_1
          • eye.rules.RuleMolweight_12_1
          • eye.rules.RuleMolWeight_12_2
          • eye.rules.RuleMolWeight_9_2
        • sicret.rules.RuleSurfaceTension
          • sicret.rules.Rule26
        • sicret.rules.RuleVapourPressure
          • sicret.rules.Rule12
        • toxtree.plugins.kroes.rules.RuleVerifyIntake
          • toxtree.plugins.kroes.rules.KroesRule11
          • toxtree.plugins.kroes.rules.KroesRule12
          • toxtree.plugins.kroes.rules.KroesRule4
          • toxtree.plugins.kroes.rules.KroesRule5
          • toxtree.plugins.kroes.rules.KroesRule7
          • toxtree.plugins.kroes.rules.KroesRule9
      • toxTree.tree.rules.UserInputRule (implements toxTree.core.IDecisionInteractive)
        • mutant.rules.UserInputABUnsaturatedAldehyde
        • toxtree.plugins.ames.rules.UserInputABUnsaturatedAldehyde
        • mutant.rules.UserInputAromaticAmine
        • toxtree.plugins.ames.rules.UserInputAromaticAmine
    • toxTree.tree.AbstractTree (implements toxTree.core.IDecisionMethod, java.util.Observer, toxTree.core.XMLSerializable)
      • toxTree.tree.UserDefinedTree (implements toxTree.core.IDecisionInteractive, org.openscience.cdk.qsar.IMolecularDescriptor, ambit2.core.data.IObject2Properties<D>)
        • toxtree.plugins.ames.AmesMutagenicityRules (implements toxTree.core.IDecisionInteractive)
        • mutant.BB_CarcMutRules (implements toxTree.core.IDecisionInteractive)
        • com.molecularnetworks.start.BiodgeradationRules (implements toxTree.core.IDecisionInteractive)
        • toxtree.plugins.search.CompoundLookup
        • toxTree.tree.cramer.CramerRules
        • cramer2.CramerRulesWithExtensions
        • toxtree.plugins.dnabinding.DNABindingPlugin (implements toxTree.core.IDecisionInteractive)
        • eye.EyeIrritationRules (implements toxTree.core.IDecisionInteractive)
        • toxtree.plugins.func.FuncRules (implements toxTree.core.IDecisionInteractive)
        • toxtree.plugins.kroes.Kroes1Tree
        • toxtree.plugins.lewis.LewisTree
        • michaelacceptors.MichaelAcceptorRules (implements toxTree.core.IDecisionInteractive)
        • mic.MICRules (implements toxTree.core.IDecisionInteractive)
        • toxtree.plugins.moa.MOARules (implements toxTree.core.IDecisionInteractive)
        • toxtree.plugins.proteinbinding.ProteinBindingPlugin (implements toxTree.core.IDecisionInteractive)
        • toxtree.tree.cramer3.RevisedCramerDecisionTree
        • sicret.SicretRules (implements toxTree.core.IDecisionInteractive)
        • toxtree.plugins.skinsensitisation.SkinSensitisationPlugin (implements toxTree.core.IDecisionInteractive)
        • toxtree.plugins.smartcyp.SMARTCYPPlugin (implements toxTree.core.IDecisionInteractive, toxTree.core.IMetaboliteGenerator)
        • toxTree.tree.demo.SMARTSTree
        • toxTree.tree.demo.SubstructureTree
        • verhaar.VerhaarScheme
          • toxtree.plugins.verhaar2.VerhaarScheme2
    • toxTree.io.batch.BatchProcessing (implements toxTree.io.batch.IBatchProcessing)
      • toxTree.io.batch.ChemObjectBatchProcessing
        • toxTree.io.batch.ToxTreeBatchProcessing
    • toxTree.tree.CategoriesList (implements toxTree.core.IDecisionCategories, java.util.Observer, toxTree.core.XMLSerializable)
    • toxtree.data.DataContainer
      • toxtree.data.DecisionMethodData
        • toxTree.apps.toxForest.ToxForestData
    • toxtree.data.DataModule (implements java.util.Observer, java.io.Serializable)
      • toxtree.data.DecisionMethodsDataModule
        • toxTree.apps.toxForest.ToxForestDataModule
        • toxtree.data.ToxTreeModule
    • toxTree.tree.DecisionMethodsList (implements toxTree.core.IDecisionMethodsList, toxTree.core.XMLSerializable)
      • toxTree.tree.DecisionResultsList (implements java.util.Observer)
        • toxTree.tree.BatchDecisionResultsList (implements toxTree.core.IDecisionMethod, toxTree.core.IDecisionResult)
    • toxTree.tree.DecisionNode (implements toxTree.core.IDecisionRule, toxTree.core.IDecisionTransition, java.util.Observer)
      • toxTree.tree.MultiLabelDecisionNode
    • toxTree.tree.DecisionNodesList (implements toxTree.core.IDecisionRuleList, java.util.Observer, toxTree.core.XMLSerializable)
      • toxTree.tree.MultiLabelDecisionNodesList
    • toxTree.tree.DefaultCategory (implements toxTree.core.IDecisionCategory, toxTree.core.XMLSerializable)
      • toxtree.plugins.ames.categories.AmesMutagenicityCategory
        • toxtree.plugins.ames.categories.CategoryError
        • toxtree.plugins.ames.categories.CategoryMutagenTA100
        • toxtree.plugins.ames.categories.CategoryNoAlertAmes
        • toxtree.plugins.ames.categories.CategoryNonMutagen
        • toxtree.plugins.ames.categories.CategoryPositiveAlertAmes
        • toxtree.plugins.ames.categories.QSARApplicable
      • com.molecularnetworks.start.categories.CategoryBiodegradable
      • michaelacceptors.categories.CategoryMichaelAcceptor
      • com.molecularnetworks.start.categories.CategoryPersistent
      • sicret.categories.CategoryUnknown
      • michaelacceptors.categories.CategoryUnknown
      • com.molecularnetworks.start.categories.CategoryUnknown
      • eye.categories.CategoryUnknown
      • toxtree.plugins.moa.categories.CategoryUnknown
      • verhaar.categories.Class4SpecificMechanism
      • verhaar.categories.Class5Unknown
      • toxTree.tree.cramer.CramerClass2
      • cramer2.categories.CramerClass2
      • toxtree.tree.cramer3.CramerClass2
      • toxtree.plugins.lewis.categories.CYP1A2
      • toxtree.plugins.lewis.categories.CYP2A
      • toxtree.plugins.lewis.categories.CYP2B
      • toxtree.plugins.lewis.categories.CYP2C
      • toxtree.plugins.lewis.categories.CYP2D
      • toxtree.plugins.lewis.categories.CYP2E
      • toxtree.plugins.lewis.categories.CYP3A4
      • toxTree.tree.categories.DefaultClass1
      • toxTree.tree.categories.DefaultClass2
      • toxtree.plugins.dnabinding.categories.DNABindingCategory
        • toxtree.plugins.dnabinding.categories.AcylTransferAlerts
        • toxtree.plugins.dnabinding.categories.MichaelAcceptors
        • toxtree.plugins.dnabinding.categories.NoAlerts
        • toxtree.plugins.dnabinding.categories.ShiffBaseAlerts
        • toxtree.plugins.dnabinding.categories.SN1Alerts
        • toxtree.plugins.dnabinding.categories.SN2Alerts
      • toxtree.plugins.search.categories.Found
      • toxtree.plugins.func.categories.FuncCat1
      • toxtree.plugins.func.categories.FuncCat2
      • mutant.categories.MutantCategory
        • mutant.categories.CategoryCarcinogen
        • mutant.categories.CategoryError
        • mutant.categories.CategoryMutagenTA100
        • mutant.categories.CategoryNoGenotoxicAlert
        • mutant.categories.CategoryNonMutagen
        • mutant.categories.CategoryNoNongenotoxicAlert
        • mutant.categories.CategoryNotCarcinogen
        • mutant.categories.CategoryPositiveAlertGenotoxic
        • mutant.categories.CategoryPositiveAlertNongenotoxic
        • mutant.categories.QSARApplicable
      • toxTree.tree.NonToxicCategory
        • sicret.categories.CategoryNotCorrosive
        • eye.categories.CategoryNotCorrosive2Eye
        • eye.categories.CategoryNotCorrosive2Skin
        • eye.categories.CategoryNotCorrosive2SkinAndIrritating2Eye
        • eye.categories.CategoryNotCorrosive2SkinEye
        • eye.categories.CategoryNotCorrosive2SkinOrIrritating2Eye
        • sicret.categories.CategoryNotIrritating
        • eye.categories.CategoryNotIrritating2Eye
        • sicret.categories.CategoryNotIrritatingOrCorrosive
        • eye.categories.CategoryNotIrritatingOrCorrosive2Eye
        • toxTree.tree.cramer.CramerClass1
        • cramer2.categories.CramerClass1
        • toxtree.tree.cramer3.CramerClass1
        • mic.categories.micronucleusClass2
        • toxtree.plugins.kroes.categories.NegligibleRisk
        • toxtree.plugins.kroes.categories.NotASafetyConcern
      • toxtree.plugins.smartcyp.categories.NoSites
      • toxtree.plugins.search.categories.NotFound
      • toxtree.plugins.proteinbinding.categories.ProteinBindingCategory
        • toxtree.plugins.proteinbinding.categories.AcylTransferAlerts
        • toxtree.plugins.proteinbinding.categories.MichaelAcceptors
        • toxtree.plugins.proteinbinding.categories.NoAlerts
        • toxtree.plugins.proteinbinding.categories.ShiffBaseAlerts
        • toxtree.plugins.proteinbinding.categories.SN2Alerts
        • toxtree.plugins.proteinbinding.categories.SNArAlerts
      • toxtree.plugins.kroes.categories.RequireCompoundSpecificToxicityData
      • toxtree.plugins.smartcyp.categories.SitesHigherRank
      • toxtree.plugins.smartcyp.categories.SitesRank1
      • toxtree.plugins.smartcyp.categories.SitesRank2
      • toxtree.plugins.smartcyp.categories.SitesRank3
      • toxtree.plugins.skinsensitisation.categories.SkinSensitisationCategory
        • toxtree.plugins.skinsensitisation.categories.AcylTransferAlerts
        • toxtree.plugins.skinsensitisation.categories.MichaelAcceptors
        • toxtree.plugins.skinsensitisation.categories.NoAlerts
        • toxtree.plugins.skinsensitisation.categories.ShiffBaseAlerts
        • toxtree.plugins.skinsensitisation.categories.SN2Alerts
        • toxtree.plugins.skinsensitisation.categories.SNArAlerts
      • toxTree.tree.ToxicCategory
        • toxtree.plugins.moa.categories.CategoryAcetylcholinesteraseInhibitors
        • toxtree.plugins.moa.categories.CategoryCentralNervousSystemSeizureAgents
        • sicret.categories.CategoryCorrosive
        • eye.categories.CategoryCorrosiveEye
        • eye.categories.CategoryCorrosiveSkin
        • toxtree.plugins.moa.categories.CategoryElectrophileProelectrophileReactivity
        • sicret.categories.CategoryIrritating
        • sicret.categories.CategoryIrritatingOrCorrosive
        • eye.categories.CategoryModerateIrritation2Eye
        • toxtree.plugins.moa.categories.CategoryNarcosis1
        • toxtree.plugins.moa.categories.CategoryNarcosis2
        • toxtree.plugins.moa.categories.CategoryNarcosis3
        • toxtree.plugins.moa.categories.CategoryOxidativePhosphorylationUncouplers
        • verhaar.categories.Class1BaselineToxicity
        • verhaar.categories.Class2LessInertCompounds
        • verhaar.categories.Class3UnspecificReactivity
        • toxTree.tree.cramer.CramerClass3
        • cramer2.categories.CramerClass3
        • toxtree.tree.cramer3.CramerClass3
        • mic.categories.micronucleusClass1
    • toxTree.tree.RulesList (implements toxTree.core.IDecisionRuleList, toxTree.core.XMLSerializable)
    • toxtree.ui.tree.TreeLayout (implements java.util.Observer)
  • toxTree.tree.ProgressStatus (implements toxTree.core.IProgressStatus, java.io.Serializable)
  • toxtree.ui.PropertyInput (implements java.beans.PropertyChangeListener, java.io.Serializable)
  • toxTree.qsar.QSARDescriptor (implements java.lang.Comparable<T>, java.io.Serializable)
  • org.openscience.cdk.isomorphism.matchers.QueryChemObject (implements org.openscience.cdk.interfaces.IChemObject)
    • org.openscience.cdk.isomorphism.matchers.QueryAtom (implements org.openscience.cdk.isomorphism.matchers.IQueryAtom)
      • org.openscience.cdk.isomorphism.matchers.smarts.SMARTSAtom (implements org.openscience.cdk.isomorphism.matchers.IQueryAtom)
        • org.openscience.cdk.isomorphism.matchers.smarts.AnyAtom
          • toxTree.query.ReallyAnyAtom
          • toxTree.query.TopologyAnyAtom
      • org.openscience.cdk.isomorphism.matchers.SymbolQueryAtom (implements org.openscience.cdk.isomorphism.matchers.IQueryAtom)
        • toxTree.query.CHQueryAtom
          • toxTree.query.AliphaticCHQueryAtom
        • toxTree.query.TopologySymbolQueryAtom
    • org.openscience.cdk.isomorphism.matchers.QueryBond (implements org.openscience.cdk.isomorphism.matchers.IQueryBond)
      • org.openscience.cdk.isomorphism.matchers.OrderQueryBond (implements org.openscience.cdk.isomorphism.matchers.IQueryBond)
        • toxtree.plugins.kroes.rules.MyOrderQueryBond
        • verhaar.query.OrderQueryBondAromatic
        • toxTree.query.SingleOrDoubleQueryBond
        • toxTree.query.TopologyOrderQueryBond
      • org.openscience.cdk.isomorphism.matchers.smarts.SMARTSBond (implements org.openscience.cdk.isomorphism.matchers.IQueryBond)
        • org.openscience.cdk.isomorphism.matchers.smarts.AromaticQueryBond
          • verhaar.query.AromaticQueryBond
  • toxtree.lookup.RemoteLookup<RESULT>
    • toxTree.query.remote.RemoteCompoundLookup
  • toxtree.plugins.moa.rules.RuleAlertsNarcosis1_1_3_1
  • toxtree.plugins.moa.rules.RuleAlertsNarcosis1_1_4_1
  • toxtree.plugins.moa.rules.RuleAlertsNarcosis1_1_4_2
  • toxTree.tree.RuleResult (implements java.io.Serializable)
  • toxtree.ui.tree.SelectListDialog
  • toxTree.query.SimpleReactions
  • mutant.rules.SMARTSGroup
  • toxtree.plugins.ames.rules.SMARTSGroup
  • mutant.rules.SMARTSgroups
  • toxtree.plugins.ames.rules.SMARTSgroups
  • toxtree.ui.SpringUtilities
  • mutant.descriptors.SubstituentExtractor
  • toxtree.plugins.ames.descriptors.SubstituentExtractor
  • mutant.descriptors.SubstituentPosition
  • toxtree.plugins.ames.descriptors.SubstituentPosition
  • mutant.descriptors.SubstituentsDescriptor (implements org.openscience.cdk.qsar.IMolecularDescriptor)
    • mutant.descriptors.AromaticAmineSubstituentsDescriptor
  • toxtree.plugins.ames.descriptors.SubstituentsDescriptor (implements org.openscience.cdk.qsar.IMolecularDescriptor)
    • toxtree.plugins.ames.descriptors.AromaticAmineSubstituentsDescriptor
  • toxtree.ui.editors.SwingEditorFactory (implements toxTree.ui.IEditorFactory)
  • java.lang.Throwable (implements java.io.Serializable)
    • java.lang.Exception
      • toxTree.io.batch.BatchProcessingException
      • toxTree.exceptions.DecisionMethodException
        • toxTree.exceptions.DecisionMethodIOException
          • toxTree.exceptions.DesisionMethodUIDException
        • toxTree.exceptions.DRuleException
        • toxTree.exceptions.DRuleNotImplemented
          • toxTree.exceptions.DRulePropertyNotAvailable
        • toxTree.exceptions.XMLDecisionMethodException
      • toxTree.exceptions.DecisionResultException
        • toxTree.exceptions.DCategoryUnknown
        • toxTree.exceptions.DecisionResultIOException
          • toxTree.exceptions.DecisionResultUIDException
        • toxTree.exceptions.DMethodNotAssigned
      • toxTree.exceptions.FilterException
      • toxTree.exceptions.IntrospectionException
      • toxTree.exceptions.MolAnalyseException
      • toxTree.exceptions.ReactionException
      • toxTree.exceptions.ToxTreeIOException
  • toxTree.io.Tools
  • toxTree.core.ToxTreeDescriptor (implements org.openscience.cdk.qsar.IMolecularDescriptor)
  • toxTree.apps.ToxtreeHeadless
  • toxTree.apps.ToxtreeOptions
  • toxTree.core.ToxTreePackageEntry
  • toxTree.tree.Tree2PrefuseGraph (implements toxTree.core.IProcessRule)
  • toxTree.tree.TreeResult (implements toxTree.core.IDecisionResult)
    • toxtree.plugins.ames.rules.AmesMutagenicityTreeResult
    • toxtree.tree.cramer3.CDTResult
    • toxTree.tree.cramer.CramerTreeResult
    • cramer2.categories.CramerTreeResult
    • toxtree.plugins.dnabinding.rules.DNABindingTreeResult
    • toxtree.plugins.func.rules.FuncTreeResult
    • michaelacceptors.MATreeResult
    • mic.rules.MICTreeResult
    • mutant.rules.MutantTreeResult
    • toxtree.plugins.proteinbinding.rules.ProteinBindingTreeResult
    • toxtree.plugins.skinsensitisation.rules.SkinSensitisationTreeResult
    • toxtree.plugins.smartcyp.SMARTCypTreeResult
    • toxtree.plugins.verhaar2.rules.Verhaar2TreeResult
    • verhaar.rules.VerhaarTreeResult
  • toxtree.tree.cramer3.TreeSpecification
  • java.awt.event.WindowAdapter (implements java.awt.event.WindowFocusListener, java.awt.event.WindowListener, java.awt.event.WindowStateListener)
    • com.nexes.wizard.Wizard (implements java.beans.PropertyChangeListener)
      • toxtree.ui.wizard.WizardWrapper
        • toxtree.ui.wizard.DecisionTreeWizard
          • toxtree.ui.wizard.DecisionNodeWizard (implements javax.swing.event.ListSelectionListener)
  • com.nexes.wizard.WizardPanelDescriptor
    • toxtree.ui.wizard.ToxTreeWizardPanelDescriptor
      • toxtree.ui.wizard.ListPanelDescriptor

Interface Hierarchy

• java.lang.Cloneable
  • toxTree.core.IDecisionMethod (also extends toxTree.core.IDecisionMethodPrority, ambit2.core.data.IStructureDiagramHighlights, java.io.Serializable)
  • toxTree.core.IDecisionRule (also extends java.io.Serializable)
    • toxTree.core.IRuleRange
    • toxTree.core.IRuleSubstructures
    • toxTree.core.IRuleValue
  • toxTree.core.IDecisionRuleList (also extends java.util.List<E>, java.io.Serializable)
  • toxTree.core.IRuleRange
  • toxTree.core.IRuleSubstructures
  • toxTree.core.IRuleValue
• java.lang.Comparable<T>
  • toxTree.core.IDecisionCategory (also extends ambit2.base.interfaces.ICategory, java.io.Serializable)
  • toxTree.core.IDecisionResult (also extends toxTree.core.IDecisionMethodPrority, toxTree.core.IProgressStatus, java.io.Serializable)
  • toxTree.data.IObjectFilter
    • toxTree.data.IPropertyFilter
  • toxTree.data.IPropertyFilter
• ambit2.base.interfaces.ICategory
  • toxTree.core.IDecisionCategory (also extends java.lang.Comparable<T>, java.io.Serializable)
• toxtree.ui.tree.actions.ICategoryAction
• toxTree.core.IDecisionInteractive
• toxTree.core.IDecisionMethodPrority
  • toxTree.core.IDecisionMethod (also extends java.lang.Cloneable, ambit2.core.data.IStructureDiagramHighlights, java.io.Serializable)
  • toxTree.core.IDecisionResult (also extends java.lang.Comparable<T>, toxTree.core.IProgressStatus, java.io.Serializable)
• toxTree.tree.IDecisionNodesFactory
• toxTree.core.IDecisionTransition
• toxTree.core.IDescriptorBased
• toxTree.ui.IEditorFactory
• toxTree.core.IImplementationDetails
  • toxTree.tree.rules.IAlertCounter
  • toxTree.tree.rules.smarts.IRuleSMARTSubstructures
• toxTree.tree.rules.ILookupFile
• toxTree.core.IMetaboliteGenerator
• toxTree.data.IMoleculeLookup
• toxtree.ui.tree.actions.INodeAction
• toxTree.core.IProcessRule
• toxTree.core.IProgressStatus
  • toxTree.core.IDecisionResult (also extends java.lang.Comparable<T>, toxTree.core.IDecisionMethodPrority, java.io.Serializable)
• toxtree.ui.tree.actions.IRuleAction
• toxtree.tree.cramer3.rules.IRuleSMARTS
• ambit2.core.data.IStructureDiagramDepiction<OUTPUT>
  • toxTree.core.IDecisionMethod (also extends java.lang.Cloneable, toxTree.core.IDecisionMethodPrority, ambit2.core.data.IStructureDiagramHighlights, java.io.Serializable)
  • ambit2.core.data.IStructureDiagramHighlights
    • toxTree.core.IDecisionMethod (also extends java.lang.Cloneable, toxTree.core.IDecisionMethodPrority, java.io.Serializable)
• java.lang.Iterable<T>
  • java.util.Collection<E>
    • toxTree.core.IDecisionCategories (also extends java.util.List<E>, java.io.Serializable)
    • toxTree.core.IDecisionMethodsList (also extends java.util.List<E>, java.io.Serializable)
    • toxTree.core.IDecisionRuleList (also extends java.lang.Cloneable, java.util.List<E>, java.io.Serializable)
    • java.util.List<E>
      • toxTree.core.IDecisionCategories (also extends java.io.Serializable)
      • toxTree.core.IDecisionMethodsList (also extends java.io.Serializable)
      • toxTree.core.IDecisionRuleList (also extends java.lang.Cloneable, java.io.Serializable)
  • toxTree.core.IDecisionCategories (also extends java.util.List<E>, java.io.Serializable)
  • toxTree.core.IDecisionMethodsList (also extends java.util.List<E>, java.io.Serializable)
  • toxTree.core.IDecisionRuleList (also extends java.lang.Cloneable, java.util.List<E>, java.io.Serializable)
  • java.util.List<E>
    • toxTree.core.IDecisionCategories (also extends java.io.Serializable)
    • toxTree.core.IDecisionMethodsList (also extends java.io.Serializable)
    • toxTree.core.IDecisionRuleList (also extends java.lang.Cloneable, java.io.Serializable)
• java.util.Iterator<E>
  • toxTree.core.IFilteredMolecules
  • toxTree.core.IMoleculesIterator
    • toxTree.core.IFilteredMolecules
• toxTree.core.IToxTreeEditor
  • toxTree.core.IDecisionCategoryEditor
  • toxTree.core.IDecisionMethodEditor
  • toxTree.core.IDecisionRuleEditor
• toxtree.ui.tree.actions.ITreeAction
• toxtree.ui.tree.ITreeView
• java.io.Serializable
  • toxTree.io.batch.IBatchProcessing
  • toxTree.core.IDecisionCategories (also extends java.util.List<E>)
  • toxTree.core.IDecisionCategory (also extends java.lang.Comparable<T>, ambit2.base.interfaces.ICategory)
  • toxTree.core.IDecisionMethod (also extends java.lang.Cloneable, toxTree.core.IDecisionMethodPrority, ambit2.core.data.IStructureDiagramHighlights)
  • toxTree.core.IDecisionMethodsList (also extends java.util.List<E>)
  • toxTree.core.IDecisionResult (also extends java.lang.Comparable<T>, toxTree.core.IDecisionMethodPrority, toxTree.core.IProgressStatus)
  • toxTree.core.IDecisionRule (also extends java.lang.Cloneable)
    • toxTree.core.IRuleRange
    • toxTree.core.IRuleSubstructures
    • toxTree.core.IRuleValue
  • toxTree.core.IDecisionRuleList (also extends java.lang.Cloneable, java.util.List<E>)
  • toxTree.qsar.IDescriptorPreprocessor
  • toxTree.core.IRuleRange
  • toxTree.core.IRuleSubstructures
  • toxTree.core.IRuleValue
• toxTree.core.XMLSerializable

Enum Hierarchy

• java.lang.Object
  • java.lang.Enum<E> (implements java.lang.Comparable<T>, java.io.Serializable)
    • toxTree.core.IDecisionInteractive.UserOptions
    • toxTree.tree.ProgressStatus.STATUS
    • toxtree.ui.wizard.DecisionNodeWizard.RuleOptions
    • toxtree.plugins.skinsensitisation.categories.SkinSensitisationAlerts
    • toxtree.plugins.proteinbinding.categories.ProteinBindingAlerts
    • toxtree.plugins.dnabinding.categories.DNABindingAlerts
    • toxtree.tree.cramer3.groups.E_Groups