toxTree.core

Interface IDecisionResult

All Superinterfaces:

Comparable, IDecisionMethodPrority, IProgressStatus, Serializable

All Known Implementing Classes:

AmesMutagenicityTreeResult, BatchDecisionResultsList, CDTResult, CramerTreeResult, CramerTreeResult, DNABindingTreeResult, FuncTreeResult, MATreeResult, MICTreeResult, MutantTreeResult, ProteinBindingTreeResult, SkinSensitisationTreeResult, SMARTCypTreeResult, TreeResult, Verhaar2TreeResult, VerhaarTreeResult

public interface IDecisionResult
extends Comparable, Serializable, IProgressStatus, IDecisionMethodPrority

An interface definition to represent the result of applying a IDecisionMethod. In addition to the chemical category assigned IDecisionCategory, it provides access to the decision tree path which had led to the assignment.

Version:

0.1, 2005-5-1

Author:

Nina Jeliazkova nina@acad.bg

Method Summary

Modifier and Type	Method and Description
void	addPropertyChangeListener(PropertyChangeListener l)
void	addRuleResult(IDecisionRule rule, boolean value, org.openscience.cdk.interfaces.IAtomContainer molecule)
void	assignResult(org.openscience.cdk.interfaces.IAtomContainer mol)
boolean	classify(org.openscience.cdk.interfaces.IAtomContainer mol)
void	clear()
StringBuffer	explain(boolean verbose)
IDecisionCategories	getAssignedCategories()
IDecisionCategory	getCategory()
IDecisionCategory	getCategory(int index)
IDecisionMethod	getDecisionMethod()
List<CategoryFilter>	getFilters()
org.openscience.cdk.interfaces.IAtomContainer	getMolecule(int index)
PropertyChangeListener[]	getPropertyChangeListeners()
List<ambit2.base.data.Property>	getResultProperties() Returns the properties to contain the result in Property class
String[]	getResultPropertyNames() Returns the name of the property that will contain the result
IDecisionRule	getRule(int index)
RuleResult	getRuleResult(int index)
int	getRuleResultsCount()
void	hilightAlert(IDecisionRule rule)
void	hilightAlert(RuleResult ruleresult)
void	removePropertyChangeListener(PropertyChangeListener l)
void	setCategory(IDecisionCategory classID)
void	setDecisionMethod(IDecisionMethod method)
void	setMolecule(org.openscience.cdk.interfaces.IAtomContainer molecule)
void	setNotify(boolean value)
void	setSilent(boolean silent)
void	setWeb(Boolean web)
String	toString()

Methods inherited from interface java.lang.Comparable

compareTo

Methods inherited from interface toxTree.core.IProgressStatus

isError, isEstimated, isEstimating, setError, setEstimated, setEstimated, setEstimating, setPercentEstimated

Methods inherited from interface toxTree.core.IDecisionMethodPrority

getPriority, setPriority

Method Detail

toString

String toString()

Overrides:

toString in class Object

explain

StringBuffer explain(boolean verbose)
              throws DecisionResultException

Throws:

DecisionResultException

classify

boolean classify(org.openscience.cdk.interfaces.IAtomContainer mol)
          throws DecisionResultException

Throws:

DecisionResultException

getAssignedCategories

IDecisionCategories getAssignedCategories()

getCategory

IDecisionCategory getCategory()

getCategory

IDecisionCategory getCategory(int index)
                       throws DecisionResultException

Throws:

DecisionResultException

setCategory

void setCategory(IDecisionCategory classID)

getMolecule

org.openscience.cdk.interfaces.IAtomContainer getMolecule(int index)
                                                   throws DecisionResultException

Throws:

DecisionResultException

setMolecule

void setMolecule(org.openscience.cdk.interfaces.IAtomContainer molecule)
          throws DecisionResultException

Throws:

DecisionResultException

setSilent

void setSilent(boolean silent)
        throws DecisionResultException

Throws:

DecisionResultException

getRule

IDecisionRule getRule(int index)
               throws DecisionResultException

Throws:

DecisionResultException

getRuleResult

RuleResult getRuleResult(int index)
                  throws DecisionResultException

Throws:

DecisionResultException

addRuleResult

void addRuleResult(IDecisionRule rule,
                   boolean value,
                   org.openscience.cdk.interfaces.IAtomContainer molecule)
            throws DecisionResultException

Throws:

DecisionResultException

getRuleResultsCount

int getRuleResultsCount()

setDecisionMethod

void setDecisionMethod(IDecisionMethod method)

getDecisionMethod

IDecisionMethod getDecisionMethod()

clear

void clear()

addPropertyChangeListener

void addPropertyChangeListener(PropertyChangeListener l)

removePropertyChangeListener

void removePropertyChangeListener(PropertyChangeListener l)

getPropertyChangeListeners

PropertyChangeListener[] getPropertyChangeListeners()

assignResult

void assignResult(org.openscience.cdk.interfaces.IAtomContainer mol)
           throws DecisionResultException

Throws:

DecisionResultException

getResultPropertyNames

String[] getResultPropertyNames()

Returns the name of the property that will contain the result

getResultProperties

List<ambit2.base.data.Property> getResultProperties()
                                             throws net.idea.modbcum.i.exceptions.AmbitException

Returns the properties to contain the result in Property class

Returns:

Throws:

net.idea.modbcum.i.exceptions.AmbitException

getFilters

List<CategoryFilter> getFilters()

setNotify

void setNotify(boolean value)

hilightAlert

void hilightAlert(IDecisionRule rule)
           throws DecisionResultException

Throws:

DecisionResultException

hilightAlert

void hilightAlert(RuleResult ruleresult)
           throws DecisionResultException

Throws:

DecisionResultException

setWeb

void setWeb(Boolean web)