toxTree.core

Interface IMoleculesIterator

All Superinterfaces:

Iterator

All Known Subinterfaces:

IFilteredMolecules

All Known Implementing Classes:

FilteredMoleculesIterator, MoleculesIterator

public interface IMoleculesIterator
extends Iterator

Field Summary

Fields

Modifier and Type	Field and Description
static String	MSG_EMPTYFILE
static String	MSG_ERRORONOPEN
static String	MSG_ERRORONSAVE
static String	MSG_OPENSUCCESS
static String	MSG_SAVESUCCESS
static String	MSG_UNSUPPORTEDFORMAT

Method Summary

Modifier and Type	Method and Description
void	addMolecule(org.openscience.cdk.interfaces.IAtomContainer mol)
void	clear()
Object	first()
org.openscience.cdk.interfaces.IAtomContainer	getAtomContainer(int index)
int	getCurrentNo()
String	getFilename()
org.openscience.cdk.interfaces.IAtomContainer	getMolecule()
org.openscience.cdk.interfaces.IAtomContainerSet	getMoleculeForEdit()
org.openscience.cdk.interfaces.IAtomContainer[]	getMolecules()
int	getMoleculesCount()
String	getStatus()
boolean	isReading()
boolean	isWriting()
Object	last()
List	openFile(File input)
Object	prev()
void	saveFile(File output)
org.openscience.cdk.interfaces.IAtomContainer	setCurrentNo(int record)
void	setDone(boolean success)
void	setMolecule(org.openscience.cdk.interfaces.IAtomContainer mol)
void	setMolecules(List molecules)
void	setReading()
void	setWriting()

Methods inherited from interface java.util.Iterator

forEachRemaining, hasNext, next, remove

Field Detail

MSG_UNSUPPORTEDFORMAT

static final String MSG_UNSUPPORTEDFORMAT

See Also:

Constant Field Values

MSG_ERRORONSAVE

static final String MSG_ERRORONSAVE

See Also:

Constant Field Values

MSG_ERRORONOPEN

static final String MSG_ERRORONOPEN

See Also:

Constant Field Values

MSG_SAVESUCCESS

static final String MSG_SAVESUCCESS

See Also:

Constant Field Values

MSG_OPENSUCCESS

static final String MSG_OPENSUCCESS

See Also:

Constant Field Values

MSG_EMPTYFILE

static final String MSG_EMPTYFILE

See Also:

Constant Field Values

Method Detail

first

Object first()

last

Object last()

prev

Object prev()

clear

void clear()

isReading

boolean isReading()

isWriting

boolean isWriting()

getStatus

String getStatus()

getMoleculesCount

int getMoleculesCount()

getCurrentNo

int getCurrentNo()

setCurrentNo

org.openscience.cdk.interfaces.IAtomContainer setCurrentNo(int record)

getMolecules

org.openscience.cdk.interfaces.IAtomContainer[] getMolecules()

setMolecules

void setMolecules(List molecules)

getMolecule

org.openscience.cdk.interfaces.IAtomContainer getMolecule()

getMoleculeForEdit

org.openscience.cdk.interfaces.IAtomContainerSet getMoleculeForEdit()
                                                             throws Exception

Throws:

Exception

getAtomContainer

org.openscience.cdk.interfaces.IAtomContainer getAtomContainer(int index)

addMolecule

void addMolecule(org.openscience.cdk.interfaces.IAtomContainer mol)

setMolecule

void setMolecule(org.openscience.cdk.interfaces.IAtomContainer mol)

setReading

void setReading()

setWriting

void setWriting()

setDone

void setDone(boolean success)

getFilename

String getFilename()

openFile

List openFile(File input)
       throws ToxTreeIOException

Throws:

ToxTreeIOException

saveFile

void saveFile(File output)
       throws ToxTreeIOException

Throws:

ToxTreeIOException