Uses of Interface
toxTree.core.IDecisionInteractive

Packages that use IDecisionInteractive

Package	Description
com.molecularnetworks.start
cramer2	Class CramerRules is the implementation of Cramer rules [Cramer et al,78].
eye	Class SicretRules is the implementation of BfR rules for estimating skin irritation and corrosion potential.
eye.rules	The package contains implementations of IDecisionRule rules for SicretRules decision tree.
mic
mic.rules
michaelacceptors
mutant
mutant.rules
sicret	Class SicretRules is the implementation of BfR rules for estimating skin irritation and corrosion potential.
sicret.rules	The package contains implementations of IDecisionRule rules for SicretRules decision tree.
toxtree.plugins.ames
toxtree.plugins.ames.rules
toxtree.plugins.dnabinding
toxtree.plugins.dnabinding.rules
toxtree.plugins.func
toxtree.plugins.func.rules
toxtree.plugins.kroes
toxtree.plugins.kroes.rules
toxtree.plugins.lewis
toxtree.plugins.moa
toxtree.plugins.moa.rules
toxtree.plugins.proteinbinding
toxtree.plugins.proteinbinding.rules
toxtree.plugins.search
toxtree.plugins.skinsensitisation
toxtree.plugins.skinsensitisation.rules
toxtree.plugins.smartcyp
toxtree.plugins.verhaar2	Class toxtree.plugins.verhaar2.VerhaarScheme is the implementation of modified Verhaar structural scheme, according to recommendation from
toxTree.tree	This packages contains abstract and default classes implementing the interfaces defined in toxTree.core package.
toxTree.tree.cramer	Class CramerRules is the implementation of Cramer rules [Cramer et al,78].
toxtree.tree.cramer3
toxTree.tree.demo	Two simple demo decision trees.
toxTree.tree.rules	The package contains several generic implementations of IDecisionRule rules
verhaar	Class VerhaarScheme is the implementation of Verhaar structural scheme for estimating toxicity mode of action.
verhaar.rules	The package contains implementations of IDecisionRule rules for VerhaarScheme decision tree.

Uses of IDecisionInteractive in com.molecularnetworks.start

Classes in com.molecularnetworks.start that implement IDecisionInteractive

Modifier and Type	Class and Description
class	BiodgeradationRules Wrapper class that knows the biodegradation rules that are available in the toxBiodegradation plugin.

Uses of IDecisionInteractive in cramer2

Classes in cramer2 that implement IDecisionInteractive

Modifier and Type	Class and Description
class	CramerRulesWithExtensions TODO update An UserDefinedTree descendant, implementing the decision tree described in "Cramer G.

Uses of IDecisionInteractive in eye

Classes in eye that implement IDecisionInteractive

Modifier and Type	Class and Description
class	EyeIrritationRules Decision tree for estimating skin irritation and corrosion potential.

Uses of IDecisionInteractive in eye.rules

Classes in eye.rules that implement IDecisionInteractive

Modifier and Type	Class and Description
class	Rule1
class	RuleAqueousSolubility_10_2 AqueousSolubility < 0.1
class	RuleAqueousSolubility_10_5 AqueousSolubility < 0.001
class	RuleAqueousSolubility_11_7
class	RuleAqueousSolubility_8_3
class	RuleAqueousSolubility_8_4
class	RuleAqueousSolubility_9_3 AqueousSolubility < 0.0001
class	RuleAqueousSolubility1
class	RuleLipidSolubility_10_4 LipidSolubility < 400.0
class	RuleLipidSolubility_9_1
class	RuleLogP_10_1 LogKow > 3.8
class	RuleLogP_11_4 LogKow < -2
class	RuleLogP_11_5 LogKow > 3.6
class	RuleLogP_11_6
class	RuleLogP_12_4 LogP > 4.5
class	RuleLogP_9_4 LogKow > 5.5
class	RuleLogP1
class	RuleMelting_Point_11_3 MeltingPoint > 200.0
class	RuleMeltingPoint_11_2 MeltingPoint > 200.0
class	RuleMeltingPoint_12_3 MeltingPoint > 65.0
class	RuleMeltingPoint_8_1
class	RuleMolWeight_10_3 Molecular Weight > 370.0
class	RuleMolWeight_11_1 Molecular Weight > 620
class	RuleMolweight_12_1 MoleculWeight > 370
class	RuleMolWeight_12_2 Molecular Weight > 280
class	RuleMolWeight_8_2
class	RuleMolWeight_9_2 MoleculWeight > 290.0

Uses of IDecisionInteractive in mic

Classes in mic that implement IDecisionInteractive

Modifier and Type	Class and Description
class	MICRules

Uses of IDecisionInteractive in mic.rules

Classes in mic.rules that implement IDecisionInteractive

Modifier and Type	Class and Description
class	RuleAlertsForMIC

Uses of IDecisionInteractive in michaelacceptors

Classes in michaelacceptors that implement IDecisionInteractive

Modifier and Type	Class and Description
class	MichaelAcceptorRules

Uses of IDecisionInteractive in mutant

Classes in mutant that implement IDecisionInteractive

Modifier and Type	Class and Description
class	BB_CarcMutRules

Uses of IDecisionInteractive in mutant.rules

Classes in mutant.rules that implement IDecisionInteractive

Modifier and Type	Class and Description
class	QSAR6Applicable
class	RuleAlertsForCarcinogenicity
class	RuleAlertsForGenotoxicCarcinogenicity
class	RuleAlertsNongenotoxicCarcinogenicity
class	UserInputABUnsaturatedAldehyde
class	UserInputAromaticAmine
class	VerifyAlertsGenotoxic
class	VerifyAlertsNongenotoxic

Uses of IDecisionInteractive in sicret

Classes in sicret that implement IDecisionInteractive

Modifier and Type	Class and Description
class	SicretRules Decision tree for estimating skin irritation and corrosion potential.

Uses of IDecisionInteractive in sicret.rules

Classes in sicret.rules that implement IDecisionInteractive

Modifier and Type	Class and Description
class	Rule11 LogKow > 4.5
class	Rule12 VapourPressure < 0.0001
class	Rule13 Molecular Weight > 540.0
class	Rule14 MeltingPoint > 180.0
class	Rule15 AqueousSolubility < 0.0001
class	Rule16 LogKow > 5.5
class	Rule17 LogKow > 3.8
class	Rule18 AqueousSolubility < 0.1
class	Rule19 MoleculWeight > 370.0
class	Rule20 LipidSolubility < 400.0
class	Rule21 MoleculWeight > 380.0
class	Rule22 LipidSolubility < 4.0
class	Rule23 AqueousSolubility < 0.001
class	Rule24 Molecular Weight > 620.0
class	Rule25 MeltingPoint > 50.0
class	Rule26 SurfaceTension > 62.0
class	Rule27 MeltingPoint > 120.0
class	Rule28 LogKow < 0.5
class	Rule29 Molecular Weight > 370.0
class	Rule30 Molecular Weight > 280.0
class	Rule4 MeltingPoint > 55.0
class	Rule8 LipidSolubility < 0.4
class	Rule9 MoleculWeight > 290.0
class	RuleAqueousSolubility AqueousSolubility < 0.1.
class	RuleLipidSolubility LipidSolubility < 0.01.
class	RuleLogP LogP < 3.1. Expects property to be read from IMolecule.getProperty(RuleLogP.LogKow).
class	RuleMeltingPoint MeltingPoint < 200.
class	RuleMolWeight Molecular weight > 350.
class	RuleSurfaceTension SurfaceTension > 62.0.
class	RuleVapourPressure VapourPressure < 0.0001.

Uses of IDecisionInteractive in toxtree.plugins.ames

Classes in toxtree.plugins.ames that implement IDecisionInteractive

Modifier and Type	Class and Description
class	AmesMutagenicityRules

Uses of IDecisionInteractive in toxtree.plugins.ames.rules

Classes in toxtree.plugins.ames.rules that implement IDecisionInteractive

Modifier and Type	Class and Description
class	RuleAlertsAmes
class	RuleAlertsForAmesMutagenicity
class	RuleAlertsForNewAmesMutagenicity
class	VerifyAlertsAmes
class	VerifyAlertsNewAmes

Uses of IDecisionInteractive in toxtree.plugins.dnabinding

Classes in toxtree.plugins.dnabinding that implement IDecisionInteractive

Modifier and Type	Class and Description
class	DNABindingPlugin Protein binding

Uses of IDecisionInteractive in toxtree.plugins.dnabinding.rules

Classes in toxtree.plugins.dnabinding.rules that implement IDecisionInteractive

Modifier and Type	Class and Description
class	RuleDNABindingAlerts
class	VerifyAlertsDNABinding

Uses of IDecisionInteractive in toxtree.plugins.func

Classes in toxtree.plugins.func that implement IDecisionInteractive

Modifier and Type	Class and Description
class	FuncRules

Uses of IDecisionInteractive in toxtree.plugins.func.rules

Classes in toxtree.plugins.func.rules that implement IDecisionInteractive

Modifier and Type	Class and Description
class	RuleAlertsForFunc

Uses of IDecisionInteractive in toxtree.plugins.kroes

Classes in toxtree.plugins.kroes that implement IDecisionInteractive

Modifier and Type	Class and Description
class	Kroes1Tree

Uses of IDecisionInteractive in toxtree.plugins.kroes.rules

Classes in toxtree.plugins.kroes.rules that implement IDecisionInteractive

Modifier and Type	Class and Description
class	KroesRule11
class	KroesRule12 Does estimated intake exceed 1800 µg/day ?
class	KroesRule2 Are there structural alerts that raise concern for potential genotoxicity?
class	KroesRule4 Does estimated intake exceed TTC of 0.15 µg/day ?
class	KroesRule5 Does estimated intake exceed TTC of 1.5 mcg/day ?
class	KroesRule7 Does estimated intake exceed TTC of 18µg/day ?
class	KroesRule9
class	RuleVerifyIntake

Uses of IDecisionInteractive in toxtree.plugins.lewis

Classes in toxtree.plugins.lewis that implement IDecisionInteractive

Modifier and Type	Class and Description
class	LewisTree derived by Weka from table2.

Uses of IDecisionInteractive in toxtree.plugins.moa

Classes in toxtree.plugins.moa that implement IDecisionInteractive

Modifier and Type	Class and Description
class	MOARules

Uses of IDecisionInteractive in toxtree.plugins.moa.rules

Classes in toxtree.plugins.moa.rules that implement IDecisionInteractive

Modifier and Type	Class and Description
class	RuleAlertsAche
class	RuleAlertsCNS
class	RuleAlertsNarcosis2_2_1
class	RuleAlertsNarcosis3
class	RuleAlertsReactive
class	RuleAlertsUncouplers
class	VerifyAlertsAche
class	VerifyAlertsCNS
class	VerifyAlertsNarcosis1
class	VerifyAlertsNarcosis2
class	VerifyAlertsNarcosis3
class	VerifyAlertsReactive
class	VerifyAlertsUncouplers

Uses of IDecisionInteractive in toxtree.plugins.proteinbinding

Classes in toxtree.plugins.proteinbinding that implement IDecisionInteractive

Modifier and Type	Class and Description
class	ProteinBindingPlugin Protein binding

Uses of IDecisionInteractive in toxtree.plugins.proteinbinding.rules

Classes in toxtree.plugins.proteinbinding.rules that implement IDecisionInteractive

Modifier and Type	Class and Description
class	RuleProteinBindingAlerts
class	VerifyAlertsProteinBinding

Uses of IDecisionInteractive in toxtree.plugins.search

Classes in toxtree.plugins.search that implement IDecisionInteractive

Modifier and Type	Class and Description
class	CompoundLookup

Uses of IDecisionInteractive in toxtree.plugins.skinsensitisation

Classes in toxtree.plugins.skinsensitisation that implement IDecisionInteractive

Modifier and Type	Class and Description
class	SkinSensitisationPlugin Skin sensitisation

Uses of IDecisionInteractive in toxtree.plugins.skinsensitisation.rules

Classes in toxtree.plugins.skinsensitisation.rules that implement IDecisionInteractive

Modifier and Type	Class and Description
class	RuleSkinSensitisationAlerts
class	VerifyAlertsSkinSensitisation

Uses of IDecisionInteractive in toxtree.plugins.smartcyp

Classes in toxtree.plugins.smartcyp that implement IDecisionInteractive

Modifier and Type	Class and Description
class	SMARTCYPPlugin

Uses of IDecisionInteractive in toxtree.plugins.verhaar2

Classes in toxtree.plugins.verhaar2 that implement IDecisionInteractive

Modifier and Type	Class and Description
class	VerhaarScheme2 An implementaton of Verhaar scheme for predicting toxicity mode of action.

Uses of IDecisionInteractive in toxTree.tree

Classes in toxTree.tree that implement IDecisionInteractive

Modifier and Type	Class and Description
class	UserDefinedTree A default decision tree class, implementing IDecisionMethod interface.

Uses of IDecisionInteractive in toxTree.tree.cramer

Classes in toxTree.tree.cramer that implement IDecisionInteractive

Modifier and Type	Class and Description
class	CramerRules An UserDefinedTree descendant, implementing the decision tree described in "Cramer G.

Uses of IDecisionInteractive in toxtree.tree.cramer3

Classes in toxtree.tree.cramer3 that implement IDecisionInteractive

Modifier and Type	Class and Description
class	RevisedCramerDecisionTree Assigns categories: toxTree.tree.cramer3.CramerClass1 toxTree.tree.cramer3.CramerClass2 toxTree.tree.cramer3.CramerClass2

Uses of IDecisionInteractive in toxTree.tree.demo

Classes in toxTree.tree.demo that implement IDecisionInteractive

Modifier and Type	Class and Description
class	SMARTSTree
class	SubstructureTree A demo decision tree consisting of a single decision rule , which checks for the presence of benzene ring.

Uses of IDecisionInteractive in toxTree.tree.rules

Classes in toxTree.tree.rules that implement IDecisionInteractive

Modifier and Type	Class and Description
class	RuleInitAlertCounter
class	RuleVerifyAlertsCounter
class	RuleVerifyProperty Verifies if property is >, < or = to a RuleVerifyProperty.getProperty() value.
class	UserInputRule

Uses of IDecisionInteractive in verhaar

Classes in verhaar that implement IDecisionInteractive

Modifier and Type	Class and Description
class	VerhaarScheme An implementaton of Verhaar scheme for predicting toxicity mode of action.

Uses of IDecisionInteractive in verhaar.rules

Classes in verhaar.rules that implement IDecisionInteractive

Modifier and Type	Class and Description
class	RuleAlertsClass1
class	RuleAlertsClass2
class	RuleAlertsClass3
class	RuleVerifyClass1Alerts
class	RuleVerifyClass2Alerts
class	RuleVerifyClass3Alerts