toxTree.query

Class TopologyAnyBond

java.lang.Object

org.openscience.cdk.ChemObject

org.openscience.cdk.ElectronContainer

org.openscience.cdk.Bond

toxTree.query.TopologyAnyBond

All Implemented Interfaces:

Serializable, Cloneable, org.openscience.cdk.interfaces.IBond, org.openscience.cdk.interfaces.ICDKObject, org.openscience.cdk.interfaces.IChemObject, org.openscience.cdk.interfaces.IElectronContainer, org.openscience.cdk.isomorphism.matchers.IQueryBond

public class TopologyAnyBond
extends org.openscience.cdk.Bond
implements org.openscience.cdk.isomorphism.matchers.IQueryBond

TODO add description

Author:

ThinClient Modified 2005-8-24

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from interface org.openscience.cdk.interfaces.IBond

org.openscience.cdk.interfaces.IBond.Order, org.openscience.cdk.interfaces.IBond.Stereo

Field Summary

Fields

Modifier and Type	Field and Description
protected boolean	inRing

Fields inherited from class org.openscience.cdk.Bond

atomCount, atoms, order, stereo

Fields inherited from class org.openscience.cdk.ElectronContainer

electronCount

Constructor Summary

Constructors

Constructor and Description
TopologyAnyBond(boolean inRing)
TopologyAnyBond(org.openscience.cdk.interfaces.IAtom arg0, org.openscience.cdk.interfaces.IAtom arg1, boolean inRing)
TopologyAnyBond(org.openscience.cdk.interfaces.IAtom arg0, org.openscience.cdk.interfaces.IAtom arg1, org.openscience.cdk.interfaces.IBond.Order arg2, boolean inRing)
TopologyAnyBond(org.openscience.cdk.interfaces.IAtom arg0, org.openscience.cdk.interfaces.IAtom arg1, org.openscience.cdk.interfaces.IBond.Order arg2, org.openscience.cdk.interfaces.IBond.Stereo arg3, boolean inRing)

Method Summary

Modifier and Type	Method and Description
boolean	matches(org.openscience.cdk.interfaces.IBond bond)

Methods inherited from class org.openscience.cdk.Bond

atoms, clone, compare, contains, get2DCenter, get3DCenter, getAtom, getAtomCount, getConnectedAtom, getConnectedAtoms, getOrder, getStereo, isAromatic, isConnectedTo, isInRing, setAtom, setAtoms, setIsAromatic, setIsInRing, setOrder, setStereo, toString

Methods inherited from class org.openscience.cdk.ElectronContainer

getElectronCount, setElectronCount

Methods inherited from class org.openscience.cdk.ChemObject

addListener, addProperties, getBuilder, getFlag, getFlags, getFlagValue, getID, getListenerCount, getNotification, getProperties, getProperty, getProperty, notifyChanged, notifyChanged, removeListener, removeProperty, setFlag, setFlags, setID, setNotification, setProperties, setProperty, shallowCopy

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.openscience.cdk.interfaces.IBond

atoms, clone, compare, contains, get2DCenter, get3DCenter, getAtom, getAtomCount, getConnectedAtom, getConnectedAtoms, getOrder, getStereo, isAromatic, isConnectedTo, isInRing, setAtom, setAtoms, setIsAromatic, setIsInRing, setOrder, setStereo

Methods inherited from interface org.openscience.cdk.interfaces.IElectronContainer

getElectronCount, setElectronCount

Methods inherited from interface org.openscience.cdk.interfaces.IChemObject

addListener, addProperties, getFlag, getFlags, getFlagValue, getID, getListenerCount, getNotification, getProperties, getProperty, getProperty, notifyChanged, notifyChanged, removeListener, removeProperty, setFlag, setFlags, setID, setNotification, setProperties, setProperty, toString

Methods inherited from interface org.openscience.cdk.interfaces.ICDKObject

getBuilder

Field Detail

inRing

protected boolean inRing

Constructor Detail

TopologyAnyBond

public TopologyAnyBond(boolean inRing)

TopologyAnyBond

public TopologyAnyBond(org.openscience.cdk.interfaces.IAtom arg0,
                       org.openscience.cdk.interfaces.IAtom arg1,
                       boolean inRing)

Parameters:

arg0 -

arg1 -

TopologyAnyBond

public TopologyAnyBond(org.openscience.cdk.interfaces.IAtom arg0,
                       org.openscience.cdk.interfaces.IAtom arg1,
                       org.openscience.cdk.interfaces.IBond.Order arg2,
                       boolean inRing)

Parameters:

arg0 -

arg1 -

arg2 -

TopologyAnyBond

public TopologyAnyBond(org.openscience.cdk.interfaces.IAtom arg0,
                       org.openscience.cdk.interfaces.IAtom arg1,
                       org.openscience.cdk.interfaces.IBond.Order arg2,
                       org.openscience.cdk.interfaces.IBond.Stereo arg3,
                       boolean inRing)

Parameters:

arg0 -

arg1 -

arg2 -

arg3 -

Method Detail

matches

public boolean matches(org.openscience.cdk.interfaces.IBond bond)

Specified by:

matches in interface org.openscience.cdk.isomorphism.matchers.IQueryBond