Uses of Class
toxTree.tree.DefaultCategory

Packages that use DefaultCategory

Package	Description
com.molecularnetworks.start.categories
eye.categories	The package contains implementations of IDecisionCategory categories for EyeIrritationRules decision tree.
mic.categories
michaelacceptors.categories
mutant.categories
sicret.categories	The package contains implementations of IDecisionCategory categories for SicretRules decision tree.
toxtree.plugins.ames.categories
toxtree.plugins.dnabinding.categories
toxtree.plugins.func.categories
toxtree.plugins.kroes.categories
toxtree.plugins.kroes.rules
toxtree.plugins.lewis.categories
toxtree.plugins.moa.categories
toxtree.plugins.proteinbinding.categories
toxtree.plugins.search.categories
toxtree.plugins.skinsensitisation.categories
toxtree.plugins.smartcyp.categories
toxTree.tree	This packages contains abstract and default classes implementing the interfaces defined in toxTree.core package.
toxTree.tree.categories	The package contains default implementations of IDecisionCategory categories.
toxTree.tree.cramer	Class CramerRules is the implementation of Cramer rules [Cramer et al,78].
verhaar.categories	The package contains implementations of IDecisionCategory categories for VerhaarScheme decision tree.

Uses of DefaultCategory in com.molecularnetworks.start.categories

Subclasses of DefaultCategory in com.molecularnetworks.start.categories

Modifier and Type	Class and Description
class	CategoryBiodegradable Class 1 (easily biodegradable chemical).
class	CategoryPersistent Class 2 (persistent chemical).

Uses of DefaultCategory in eye.categories

Subclasses of DefaultCategory in eye.categories

Modifier and Type	Class and Description
class	CategoryCorrosiveEye Assigned when compound is estimated to be corrosive to skin.
class	CategoryCorrosiveSkin
class	CategoryModerateIrritation2Eye
class	CategoryNotCorrosive2Eye
class	CategoryNotCorrosive2Skin Assigned when compound is estimated to be not corrosive to skin.
class	CategoryNotCorrosive2SkinAndIrritating2Eye
class	CategoryNotCorrosive2SkinEye
class	CategoryNotCorrosive2SkinOrIrritating2Eye
class	CategoryNotIrritating2Eye Assigned when compound is estimated to be not irritating to skin.
class	CategoryNotIrritatingOrCorrosive2Eye Assigned when compound is estimated to be not Irritating or corrosive to skin.

Uses of DefaultCategory in mic.categories

Subclasses of DefaultCategory in mic.categories

Modifier and Type	Class and Description
class	micronucleusClass1
class	micronucleusClass2

Uses of DefaultCategory in michaelacceptors.categories

Subclasses of DefaultCategory in michaelacceptors.categories

Modifier and Type	Class and Description
class	CategoryMichaelAcceptor

Uses of DefaultCategory in mutant.categories

Subclasses of DefaultCategory in mutant.categories

Modifier and Type	Class and Description
class	CategoryCarcinogen
class	CategoryNoGenotoxicAlert
class	CategoryNoNongenotoxicAlert
class	CategoryNotCarcinogen
class	CategoryPositiveAlertGenotoxic
class	CategoryPositiveAlertNongenotoxic
class	MutantCategory

Uses of DefaultCategory in sicret.categories

Subclasses of DefaultCategory in sicret.categories

Modifier and Type	Class and Description
class	CategoryCorrosive Assigned when compound is estimated to be corrosive to skin.
class	CategoryIrritating Assigned when compound is estimated to be irritating to skin.
class	CategoryIrritatingOrCorrosive Assigned when compound is estimated to be irritating or corrosive to skin.
class	CategoryNotCorrosive Assigned when compound is estimated to be not corrosive to skin.
class	CategoryNotIrritating Assigned when compound is estimated to be not irritating to skin.
class	CategoryNotIrritatingOrCorrosive Assigned when compound is estimated to be not Irritating or corrosive to skin.
class	CategoryUnknown Assigned when SicretRules are not able to estimate skin irritation or corrosive potential.

Uses of DefaultCategory in toxtree.plugins.ames.categories

Subclasses of DefaultCategory in toxtree.plugins.ames.categories

Modifier and Type	Class and Description
class	AmesMutagenicityCategory
class	CategoryError
class	CategoryMutagenTA100
class	CategoryNoAlertAmes
class	CategoryNonMutagen
class	CategoryPositiveAlertAmes
class	QSARApplicable

Uses of DefaultCategory in toxtree.plugins.dnabinding.categories

Subclasses of DefaultCategory in toxtree.plugins.dnabinding.categories

Modifier and Type	Class and Description
class	AcylTransferAlerts Acyl transfer
class	DNABindingCategory
class	MichaelAcceptors Michael Acceptors
class	NoAlerts No alerts
class	ShiffBaseAlerts Shiff base
class	SN1Alerts Substrate has structural alerts for Nucleophilic Aromatic Substitution
class	SN2Alerts second order nucleophilic aliphatic substitution reaction

Uses of DefaultCategory in toxtree.plugins.func.categories

Subclasses of DefaultCategory in toxtree.plugins.func.categories

Modifier and Type	Class and Description
class	FuncCat1
class	FuncCat2

Uses of DefaultCategory in toxtree.plugins.kroes.categories

Subclasses of DefaultCategory in toxtree.plugins.kroes.categories

Modifier and Type	Class and Description
class	NegligibleRisk
class	NotASafetyConcern Substance would not be expected to be a safety concern
class	RequireCompoundSpecificToxicityData

Uses of DefaultCategory in toxtree.plugins.kroes.rules

Fields in toxtree.plugins.kroes.rules declared as DefaultCategory

Modifier and Type	Field and Description
protected DefaultCategory	KroesRule8.category

Uses of DefaultCategory in toxtree.plugins.lewis.categories

Subclasses of DefaultCategory in toxtree.plugins.lewis.categories

Modifier and Type	Class and Description
class	CYP1A2
class	CYP2A
class	CYP2B
class	CYP2C
class	CYP2D
class	CYP2E
class	CYP3A4

Uses of DefaultCategory in toxtree.plugins.moa.categories

Subclasses of DefaultCategory in toxtree.plugins.moa.categories

Modifier and Type	Class and Description
class	CategoryAcetylcholinesteraseInhibitors
class	CategoryCentralNervousSystemSeizureAgents
class	CategoryElectrophileProelectrophileReactivity
class	CategoryNarcosis1 Assigned when compound is estimated to be corrosive to skin.
class	CategoryNarcosis2
class	CategoryNarcosis3
class	CategoryOxidativePhosphorylationUncouplers

Uses of DefaultCategory in toxtree.plugins.proteinbinding.categories

Subclasses of DefaultCategory in toxtree.plugins.proteinbinding.categories

Modifier and Type	Class and Description
class	ProteinBindingCategory
class	SNArAlerts Substrate has structural alerts for Nucleophilic Aromatic Substitution

Uses of DefaultCategory in toxtree.plugins.search.categories

Subclasses of DefaultCategory in toxtree.plugins.search.categories

Modifier and Type	Class and Description
class	Found Not found
class	NotFound Not found

Uses of DefaultCategory in toxtree.plugins.skinsensitisation.categories

Subclasses of DefaultCategory in toxtree.plugins.skinsensitisation.categories

Modifier and Type	Class and Description
class	SkinSensitisationCategory

Uses of DefaultCategory in toxtree.plugins.smartcyp.categories

Subclasses of DefaultCategory in toxtree.plugins.smartcyp.categories

Modifier and Type	Class and Description
class	NoSites
class	SitesHigherRank
class	SitesRank1
class	SitesRank2
class	SitesRank3

Uses of DefaultCategory in toxTree.tree

Subclasses of DefaultCategory in toxTree.tree

Modifier and Type	Class and Description
class	NonToxicCategory A non toxic category
class	ToxicCategory A toxic category

Uses of DefaultCategory in toxTree.tree.categories

Subclasses of DefaultCategory in toxTree.tree.categories

Modifier and Type	Class and Description
class	DefaultClass1
class	DefaultClass2

Uses of DefaultCategory in toxTree.tree.cramer

Subclasses of DefaultCategory in toxTree.tree.cramer

Modifier and Type	Class and Description
class	CramerClass1 A DefaultCategory descendant, implementation of Cramer class 1 (see CramerRules)
class	CramerClass2 A DefaultCategory descendant, implementation of Cramer class 2 (see CramerRules)
class	CramerClass3 A DefaultCategory descendant, implementation of Cramer class 3 (see CramerRules)

Uses of DefaultCategory in verhaar.categories

Subclasses of DefaultCategory in verhaar.categories

Modifier and Type	Class and Description
class	Class1BaselineToxicity Class 1 (narcosis or baseline toxicity).
class	Class2LessInertCompounds Class 2 (less inert compounds).
class	Class3UnspecificReactivity Class 3 (unspecific reactivity).
class	Class4SpecificMechanism Class 4 (compounds and groups of compounds acting by a specific mechanism).
class	Class5Unknown Class 5 Not possible to classify according to these rules.