| Package | Description |
|---|---|
| toxTree.core |
This packages contains only interface definitions, defining essential classes in toxTree application.
|
| toxtree.data | |
| toxtree.plugins.smartcyp | |
| toxtree.plugins.smartcyp.rules | |
| toxTree.tree |
This packages contains abstract and default classes implementing the interfaces
defined in
toxTree.core package. |
| Modifier and Type | Method and Description |
|---|---|
RuleResult |
IDecisionResult.getRuleResult(int index) |
| Modifier and Type | Method and Description |
|---|---|
String |
IMetaboliteGenerator.getHelp(RuleResult ruleResult) |
org.openscience.cdk.interfaces.IAtomContainerSet |
IMetaboliteGenerator.getProducts(org.openscience.cdk.interfaces.IAtomContainer reactant,
RuleResult ruleResult) |
void |
IDecisionResult.hilightAlert(RuleResult ruleresult) |
| Modifier and Type | Method and Description |
|---|---|
String |
ToxTreeModule.showMetabolites(RuleResult ruleResult) |
| Modifier and Type | Method and Description |
|---|---|
String |
SMARTCYPPlugin.getHelp(RuleResult ruleResult) |
org.openscience.cdk.interfaces.IAtomContainerSet |
SMARTCYPPlugin.getProducts(org.openscience.cdk.interfaces.IAtomContainer reactant,
RuleResult ruleResult) |
| Modifier and Type | Method and Description |
|---|---|
String |
MetaboliteGenerator.getHelp(RuleResult ruleresult) |
String |
SMARTCYPRuleRank1.getHelp(RuleResult ruleresult) |
org.openscience.cdk.interfaces.IAtomContainerSet |
MetaboliteGenerator.getProducts(org.openscience.cdk.interfaces.IAtomContainer reactant,
RuleResult ruleResult) |
org.openscience.cdk.interfaces.IAtomContainerSet |
SMARTCYPRuleRank1.getProducts(org.openscience.cdk.interfaces.IAtomContainer reactant,
RuleResult ruleResult) |
| Modifier and Type | Field and Description |
|---|---|
protected ArrayList<RuleResult> |
TreeResult.ruleResults |
| Modifier and Type | Method and Description |
|---|---|
RuleResult |
TreeResult.getRuleResult(int index) |
RuleResult |
BatchDecisionResultsList.getRuleResult(int index) |
| Modifier and Type | Method and Description |
|---|---|
ArrayList<RuleResult> |
TreeResult.getRuleResults() |
| Modifier and Type | Method and Description |
|---|---|
void |
TreeResult.hilightAlert(RuleResult ruleResult) |
void |
BatchDecisionResultsList.hilightAlert(RuleResult ruleresult) |
| Modifier and Type | Method and Description |
|---|---|
void |
TreeResult.setRuleResults(ArrayList<RuleResult> ruleResults) |
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