toxTree.tree.cramer

Class RuleSufficientSulphonateGroups

java.lang.Object

java.util.Observable

toxTree.tree.AbstractRule

toxTree.tree.cramer.RuleSufficientSulphonateGroups

All Implemented Interfaces:

Serializable, Cloneable, IDecisionRule, XMLSerializable

public class RuleSufficientSulphonateGroups
extends AbstractRule

Rule 33 of the Cramer scheme (see CramerRules)

Version:

0.1, 2005-5-3

Author:

Nina Jeliazkova

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
protected static SimpleReactions	metabolicReactions
protected static String[]	metals

Fields inherited from class toxTree.tree.AbstractRule

changes, editable, ERR_STRUCTURENOTPREPROCESSED, examples, explanation, id, logger, MSG_NO, MSG_YES, no, residueIDHidden, title

Fields inherited from interface toxTree.core.XMLSerializable

xmltag_CATEGORIES, xmltag_CATEGORY, xmltag_CATEGORYTHRESHOLD, xmltag_CLASS, xmltag_EXPLANATION, xmltag_ID, xmltag_METHOD, xmltag_METHODPARAMETER, xmltag_METHODS, xmltag_NAME, xmltag_RULE, xmltag_RULEEXAMPLE, xmltag_RULES, xmltag_TREEROOT

Constructor Summary

Constructors

Constructor and Description
RuleSufficientSulphonateGroups() Constructor

Method Summary

Modifier and Type	Method and Description
boolean	isImplemented()
boolean	verifyRule(org.openscience.cdk.interfaces.IAtomContainer molecule) IDecisionRule.verifyRule(IAtomContainer)

Methods inherited from class toxTree.tree.AbstractRule

addPropertyChangeListener, clearFlags, clone, createRule, equals, fromXML, getEditor, getExampleMolecule, getExamples, getExplanation, getID, getNum, getSelector, getTitle, hideResiduesID, isEditable, isResidueIDHidden, log, log, log, makeMolecule, removePropertyChangeListener, setEditable, setExampleMolecule, setExamples, setExplanation, setID, setNum, setTitle, toShallowXML, toString, toXML

Methods inherited from class java.util.Observable

addObserver, clearChanged, countObservers, deleteObserver, deleteObservers, hasChanged, notifyObservers, notifyObservers, setChanged

Methods inherited from class java.lang.Object

finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

metals

protected static transient String[] metals

metabolicReactions

protected static transient SimpleReactions metabolicReactions

Constructor Detail

RuleSufficientSulphonateGroups

public RuleSufficientSulphonateGroups()

Constructor

Method Detail

isImplemented

public boolean isImplemented()

Specified by:

isImplemented in interface IDecisionRule

Overrides:

isImplemented in class AbstractRule

Returns:

false if the rule is not implemented and true if it is

verifyRule

public boolean verifyRule(org.openscience.cdk.interfaces.IAtomContainer molecule)
                   throws DecisionMethodException

IDecisionRule.verifyRule(IAtomContainer)

Parameters:

molecule - org.openscience.cdk.interfaces.AtomContainer

Returns:

rule result, boolean

Throws:

DecisionMethodException