Uses of Package
toxTree.tree

Packages that use toxTree.tree

Package	Description
com.molecularnetworks.start
com.molecularnetworks.start.categories
com.molecularnetworks.start.rules
cramer2	Class CramerRules is the implementation of Cramer rules [Cramer et al,78].
cramer2.rules
eye	Class SicretRules is the implementation of BfR rules for estimating skin irritation and corrosion potential.
eye.categories	The package contains implementations of IDecisionCategory categories for EyeIrritationRules decision tree.
eye.rules	The package contains implementations of IDecisionRule rules for SicretRules decision tree.
mic
mic.categories
mic.rules
michaelacceptors
michaelacceptors.categories
michaelacceptors.rules
mutant
mutant.categories
mutant.rules
sicret	Class SicretRules is the implementation of BfR rules for estimating skin irritation and corrosion potential.
sicret.categories	The package contains implementations of IDecisionCategory categories for SicretRules decision tree.
sicret.rules	The package contains implementations of IDecisionRule rules for SicretRules decision tree.
structurefeatures.rules
toxTree.apps.toxForest
toxTree.core	This packages contains only interface definitions, defining essential classes in toxTree application.
toxTree.qsar
toxTree.tree	This packages contains abstract and default classes implementing the interfaces defined in toxTree.core package.
toxTree.tree.categories	The package contains default implementations of IDecisionCategory categories.
toxTree.tree.cramer	Class CramerRules is the implementation of Cramer rules [Cramer et al,78].
toxTree.tree.demo	Two simple demo decision trees.
toxTree.tree.rules	The package contains several generic implementations of IDecisionRule rules
toxTree.tree.rules.smarts	SMARTS support.
toxtree.data
toxtree.plugins.ames
toxtree.plugins.ames.categories
toxtree.plugins.ames.rules
toxtree.plugins.dnabinding
toxtree.plugins.dnabinding.categories
toxtree.plugins.dnabinding.rules
toxtree.plugins.func
toxtree.plugins.func.categories
toxtree.plugins.func.rules
toxtree.plugins.kroes
toxtree.plugins.kroes.categories
toxtree.plugins.kroes.rules
toxtree.plugins.lewis
toxtree.plugins.lewis.categories
toxtree.plugins.lewis.rules
toxtree.plugins.moa
toxtree.plugins.moa.categories
toxtree.plugins.moa.rules
toxtree.plugins.proteinbinding
toxtree.plugins.proteinbinding.categories
toxtree.plugins.proteinbinding.rules
toxtree.plugins.search
toxtree.plugins.search.categories
toxtree.plugins.search.rules
toxtree.plugins.skinsensitisation
toxtree.plugins.skinsensitisation.categories
toxtree.plugins.skinsensitisation.rules
toxtree.plugins.smartcyp
toxtree.plugins.smartcyp.categories
toxtree.plugins.smartcyp.rules
toxtree.plugins.verhaar2	Class toxtree.plugins.verhaar2.VerhaarScheme is the implementation of modified Verhaar structural scheme, according to recommendation from
toxtree.plugins.verhaar2.rules	The package contains implementations of IDecisionRule rules for VerhaarScheme decision tree.
toxtree.tree.cramer3
toxtree.tree.cramer3.rules
toxtree.ui	Base classes for ToxTreeApp user interface
toxtree.ui.tree	User interface for viewing and editing a decision tree IDecisionMethod
toxtree.ui.tree.actions	Actions (derived from AbstractAction for the decision tree user interface toxTree.ui.tree
verhaar	Class VerhaarScheme is the implementation of Verhaar structural scheme for estimating toxicity mode of action.
verhaar.categories	The package contains implementations of IDecisionCategory categories for VerhaarScheme decision tree.
verhaar.rules	The package contains implementations of IDecisionRule rules for VerhaarScheme decision tree.
verhaar.rules.helper

Classes in toxTree.tree used by com.molecularnetworks.start

Class and Description
AbstractTree An astract class, implementing IDecisionMethod interface.
UserDefinedTree A default decision tree class, implementing IDecisionMethod interface.

Classes in toxTree.tree used by com.molecularnetworks.start.categories

Class and Description
DefaultCategory The default class implementing IDecisionCategory interface

Classes in toxTree.tree used by com.molecularnetworks.start.rules

Class and Description
AbstractRule An abstract class implementing IDecisionRule interface.

Classes in toxTree.tree used by cramer2

Class and Description
AbstractTree An astract class, implementing IDecisionMethod interface.
UserDefinedTree A default decision tree class, implementing IDecisionMethod interface.

Classes in toxTree.tree used by cramer2.rules

Class and Description
AbstractRule An abstract class implementing IDecisionRule interface.
AbstractRuleHilightHits

Classes in toxTree.tree used by eye

Class and Description
AbstractTree An astract class, implementing IDecisionMethod interface.
UserDefinedTree A default decision tree class, implementing IDecisionMethod interface.

Classes in toxTree.tree used by eye.categories

Class and Description
DefaultCategory The default class implementing IDecisionCategory interface
NonToxicCategory A non toxic category
ToxicCategory A toxic category

Classes in toxTree.tree used by eye.rules

Class and Description
AbstractRule An abstract class implementing IDecisionRule interface.

Classes in toxTree.tree used by mic

Class and Description
AbstractTree An astract class, implementing IDecisionMethod interface.
UserDefinedTree A default decision tree class, implementing IDecisionMethod interface.

Classes in toxTree.tree used by mic.categories

Class and Description
DefaultCategory The default class implementing IDecisionCategory interface
NonToxicCategory A non toxic category
ToxicCategory A toxic category

Classes in toxTree.tree used by mic.rules

Class and Description
AbstractRule An abstract class implementing IDecisionRule interface.
AbstractRuleHilightHits
TreeResult A default class implementing IDecisionResult

Classes in toxTree.tree used by michaelacceptors

Class and Description
AbstractTree An astract class, implementing IDecisionMethod interface.
TreeResult A default class implementing IDecisionResult
UserDefinedTree A default decision tree class, implementing IDecisionMethod interface.

Classes in toxTree.tree used by michaelacceptors.categories

Class and Description
DefaultCategory The default class implementing IDecisionCategory interface

Classes in toxTree.tree used by michaelacceptors.rules

Class and Description
AbstractRule An abstract class implementing IDecisionRule interface.

Classes in toxTree.tree used by mutant

Class and Description
AbstractTree An astract class, implementing IDecisionMethod interface.
UserDefinedTree A default decision tree class, implementing IDecisionMethod interface.

Classes in toxTree.tree used by mutant.categories

Class and Description
DefaultCategory The default class implementing IDecisionCategory interface

Classes in toxTree.tree used by mutant.rules

Class and Description
AbstractRule An abstract class implementing IDecisionRule interface.
AbstractRuleHilightHits
TreeResult A default class implementing IDecisionResult

Classes in toxTree.tree used by sicret

Class and Description
AbstractTree An astract class, implementing IDecisionMethod interface.
UserDefinedTree A default decision tree class, implementing IDecisionMethod interface.

Classes in toxTree.tree used by sicret.categories

Class and Description
DefaultCategory The default class implementing IDecisionCategory interface
NonToxicCategory A non toxic category
ToxicCategory A toxic category

Classes in toxTree.tree used by sicret.rules

Class and Description
AbstractRule An abstract class implementing IDecisionRule interface.
AbstractRuleHilightHits

Classes in toxTree.tree used by structurefeatures.rules

Class and Description
AbstractRule An abstract class implementing IDecisionRule interface.

Classes in toxTree.tree used by toxTree.apps.toxForest

Class and Description
DecisionMethodsList A list of IDecisionMethod
DecisionResultsList

Classes in toxTree.tree used by toxTree.core

Class and Description
RuleResult Stores the result of IDecisionRule application, which contains the rule applied, the boolean result and the category assigned (if any).

Classes in toxTree.tree used by toxTree.qsar

Class and Description
AbstractRule An abstract class implementing IDecisionRule interface.

Classes in toxTree.tree used by toxTree.tree

Class and Description
AbstractRule An abstract class implementing IDecisionRule interface.
AbstractTree An astract class, implementing IDecisionMethod interface.
AbstractTreePrinter
AbstractTreeWriter
DecisionMethodsList A list of IDecisionMethod
DecisionNode A decision node to be used in UserDefinedTree.
DecisionNodesList A list of DecisionNode, implementing IDecisionRuleList.
DecisionResultsList
DefaultCategory The default class implementing IDecisionCategory interface
IDecisionNodesFactory
ProgressStatus
ProgressStatus.STATUS
RuleResult Stores the result of IDecisionRule application, which contains the rule applied, the boolean result and the category assigned (if any).
UserDefinedTree A default decision tree class, implementing IDecisionMethod interface.

Classes in toxTree.tree used by toxTree.tree.categories

Class and Description
DefaultCategory The default class implementing IDecisionCategory interface

Classes in toxTree.tree used by toxTree.tree.cramer

Class and Description
AbstractRule An abstract class implementing IDecisionRule interface.
AbstractRuleHilightHits
AbstractTree An astract class, implementing IDecisionMethod interface.
DefaultCategory The default class implementing IDecisionCategory interface
NonToxicCategory A non toxic category
ToxicCategory A toxic category
TreeResult A default class implementing IDecisionResult
UserDefinedTree A default decision tree class, implementing IDecisionMethod interface.

Classes in toxTree.tree used by toxTree.tree.demo

Class and Description
AbstractTree An astract class, implementing IDecisionMethod interface.
UserDefinedTree A default decision tree class, implementing IDecisionMethod interface.

Classes in toxTree.tree used by toxTree.tree.rules

Class and Description
AbstractRule An abstract class implementing IDecisionRule interface.
AbstractRuleHilightHits

Classes in toxTree.tree used by toxTree.tree.rules.smarts

Class and Description
AbstractRule An abstract class implementing IDecisionRule interface.

Classes in toxTree.tree used by toxtree.data

Class and Description
DecisionMethodsList A list of IDecisionMethod
RuleResult Stores the result of IDecisionRule application, which contains the rule applied, the boolean result and the category assigned (if any).

Classes in toxTree.tree used by toxtree.plugins.ames

Class and Description
AbstractTree An astract class, implementing IDecisionMethod interface.
UserDefinedTree A default decision tree class, implementing IDecisionMethod interface.

Classes in toxTree.tree used by toxtree.plugins.ames.categories

Class and Description
DefaultCategory The default class implementing IDecisionCategory interface

Classes in toxTree.tree used by toxtree.plugins.ames.rules

Class and Description
AbstractRule An abstract class implementing IDecisionRule interface.
TreeResult A default class implementing IDecisionResult

Classes in toxTree.tree used by toxtree.plugins.dnabinding

Class and Description
AbstractTree An astract class, implementing IDecisionMethod interface.
UserDefinedTree A default decision tree class, implementing IDecisionMethod interface.

Classes in toxTree.tree used by toxtree.plugins.dnabinding.categories

Class and Description
DefaultCategory The default class implementing IDecisionCategory interface

Classes in toxTree.tree used by toxtree.plugins.dnabinding.rules

Class and Description
AbstractRule An abstract class implementing IDecisionRule interface.
TreeResult A default class implementing IDecisionResult

Classes in toxTree.tree used by toxtree.plugins.func

Class and Description
AbstractTree An astract class, implementing IDecisionMethod interface.
UserDefinedTree A default decision tree class, implementing IDecisionMethod interface.

Classes in toxTree.tree used by toxtree.plugins.func.categories

Class and Description
DefaultCategory The default class implementing IDecisionCategory interface

Classes in toxTree.tree used by toxtree.plugins.func.rules

Class and Description
AbstractRule An abstract class implementing IDecisionRule interface.
TreeResult A default class implementing IDecisionResult

Classes in toxTree.tree used by toxtree.plugins.kroes

Class and Description
AbstractTree An astract class, implementing IDecisionMethod interface.
UserDefinedTree A default decision tree class, implementing IDecisionMethod interface.

Classes in toxTree.tree used by toxtree.plugins.kroes.categories

Class and Description
DefaultCategory The default class implementing IDecisionCategory interface
NonToxicCategory A non toxic category

Classes in toxTree.tree used by toxtree.plugins.kroes.rules

Class and Description
AbstractRule An abstract class implementing IDecisionRule interface.
AbstractRuleHilightHits
DefaultCategory The default class implementing IDecisionCategory interface

Classes in toxTree.tree used by toxtree.plugins.lewis

Class and Description
AbstractTree An astract class, implementing IDecisionMethod interface.
UserDefinedTree A default decision tree class, implementing IDecisionMethod interface.

Classes in toxTree.tree used by toxtree.plugins.lewis.categories

Class and Description
DefaultCategory The default class implementing IDecisionCategory interface

Classes in toxTree.tree used by toxtree.plugins.lewis.rules

Class and Description
AbstractRule An abstract class implementing IDecisionRule interface.

Classes in toxTree.tree used by toxtree.plugins.moa

Class and Description
AbstractTree An astract class, implementing IDecisionMethod interface.
UserDefinedTree A default decision tree class, implementing IDecisionMethod interface.

Classes in toxTree.tree used by toxtree.plugins.moa.categories

Class and Description
DefaultCategory The default class implementing IDecisionCategory interface
ToxicCategory A toxic category

Classes in toxTree.tree used by toxtree.plugins.moa.rules

Class and Description
AbstractRule An abstract class implementing IDecisionRule interface.

Classes in toxTree.tree used by toxtree.plugins.proteinbinding

Class and Description
AbstractTree An astract class, implementing IDecisionMethod interface.
UserDefinedTree A default decision tree class, implementing IDecisionMethod interface.

Classes in toxTree.tree used by toxtree.plugins.proteinbinding.categories

Class and Description
DefaultCategory The default class implementing IDecisionCategory interface

Classes in toxTree.tree used by toxtree.plugins.proteinbinding.rules

Class and Description
AbstractRule An abstract class implementing IDecisionRule interface.
TreeResult A default class implementing IDecisionResult

Classes in toxTree.tree used by toxtree.plugins.search

Class and Description
AbstractTree An astract class, implementing IDecisionMethod interface.
UserDefinedTree A default decision tree class, implementing IDecisionMethod interface.

Classes in toxTree.tree used by toxtree.plugins.search.categories

Class and Description
DefaultCategory The default class implementing IDecisionCategory interface

Classes in toxTree.tree used by toxtree.plugins.search.rules

Class and Description
AbstractRule An abstract class implementing IDecisionRule interface.

Classes in toxTree.tree used by toxtree.plugins.skinsensitisation

Class and Description
AbstractTree An astract class, implementing IDecisionMethod interface.
UserDefinedTree A default decision tree class, implementing IDecisionMethod interface.

Classes in toxTree.tree used by toxtree.plugins.skinsensitisation.categories

Class and Description
DefaultCategory The default class implementing IDecisionCategory interface

Classes in toxTree.tree used by toxtree.plugins.skinsensitisation.rules

Class and Description
AbstractRule An abstract class implementing IDecisionRule interface.
TreeResult A default class implementing IDecisionResult

Classes in toxTree.tree used by toxtree.plugins.smartcyp

Class and Description
AbstractTree An astract class, implementing IDecisionMethod interface.
RuleResult Stores the result of IDecisionRule application, which contains the rule applied, the boolean result and the category assigned (if any).
TreeResult A default class implementing IDecisionResult
UserDefinedTree A default decision tree class, implementing IDecisionMethod interface.

Classes in toxTree.tree used by toxtree.plugins.smartcyp.categories

Class and Description
DefaultCategory The default class implementing IDecisionCategory interface

Classes in toxTree.tree used by toxtree.plugins.smartcyp.rules

Class and Description
AbstractRule An abstract class implementing IDecisionRule interface.
RuleResult Stores the result of IDecisionRule application, which contains the rule applied, the boolean result and the category assigned (if any).

Classes in toxTree.tree used by toxtree.plugins.verhaar2

Class and Description
AbstractTree An astract class, implementing IDecisionMethod interface.
UserDefinedTree A default decision tree class, implementing IDecisionMethod interface.

Classes in toxTree.tree used by toxtree.plugins.verhaar2.rules

Class and Description
TreeResult A default class implementing IDecisionResult

Classes in toxTree.tree used by toxtree.tree.cramer3

Class and Description
AbstractTree An astract class, implementing IDecisionMethod interface.
TreeResult A default class implementing IDecisionResult
UserDefinedTree A default decision tree class, implementing IDecisionMethod interface.

Classes in toxTree.tree used by toxtree.tree.cramer3.rules

Class and Description
AbstractRule An abstract class implementing IDecisionRule interface.

Classes in toxTree.tree used by toxtree.ui

Class and Description
ProgressStatus

Classes in toxTree.tree used by toxtree.ui.tree

Class and Description
DecisionNode A decision node to be used in UserDefinedTree.

Classes in toxTree.tree used by toxtree.ui.tree.actions

Class and Description
DecisionMethodsList A list of IDecisionMethod
DecisionNode A decision node to be used in UserDefinedTree.

Classes in toxTree.tree used by verhaar

Class and Description
AbstractTree An astract class, implementing IDecisionMethod interface.
UserDefinedTree A default decision tree class, implementing IDecisionMethod interface.

Classes in toxTree.tree used by verhaar.categories

Class and Description
DefaultCategory The default class implementing IDecisionCategory interface
ToxicCategory A toxic category

Classes in toxTree.tree used by verhaar.rules

Class and Description
AbstractRule An abstract class implementing IDecisionRule interface.
AbstractRuleHilightHits
TreeResult A default class implementing IDecisionResult

Classes in toxTree.tree used by verhaar.rules.helper

Class and Description
AbstractRule An abstract class implementing IDecisionRule interface.
AbstractRuleHilightHits