toxTree.tree.rules

Class LookupFile

java.lang.Object

toxTree.tree.rules.LookupFile

All Implemented Interfaces:

Serializable, ILookupFile

public class LookupFile
extends Object
implements ILookupFile, Serializable

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
protected boolean	checkAromaticity
protected File	file
protected ArrayList<String>	fileCache
protected FileInputStream	fStream
protected static Logger	logger
protected boolean	useCache

Constructor Summary

Constructors

Constructor and Description
LookupFile(File file)
LookupFile(String filename)

Method Summary

Modifier and Type	Method and Description
boolean	find(org.openscience.cdk.interfaces.IAtomContainer mol)
File	getFile()
boolean	isCheckAromaticity()
boolean	isEnabled()
boolean	isUseCache()
org.openscience.cdk.interfaces.IAtomContainer	lookup(org.openscience.cdk.interfaces.IAtomContainer mol)
void	setCheckAromaticity(boolean checkAromaticity)
void	setFile(File file)
void	setUseCache(boolean useCache)
int	size()

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

file

protected File file

fileCache

protected transient ArrayList<String> fileCache

useCache

protected boolean useCache

checkAromaticity

protected boolean checkAromaticity

fStream

protected transient FileInputStream fStream

logger

protected static transient Logger logger

Constructor Detail

LookupFile

public LookupFile(String filename)
           throws IOException

Throws:

IOException

LookupFile

public LookupFile(File file)
           throws IOException

Throws:

IOException

Method Detail

find

public boolean find(org.openscience.cdk.interfaces.IAtomContainer mol)
             throws DecisionMethodException

Specified by:

find in interface ILookupFile

Throws:

DecisionMethodException

lookup

public org.openscience.cdk.interfaces.IAtomContainer lookup(org.openscience.cdk.interfaces.IAtomContainer mol)
                                                     throws DecisionMethodException,
                                                            org.openscience.cdk.exception.CDKException

Throws:

DecisionMethodException

org.openscience.cdk.exception.CDKException

getFile

public File getFile()

Specified by:

getFile in interface ILookupFile

setFile

public void setFile(File file)

Specified by:

setFile in interface ILookupFile

isUseCache

public boolean isUseCache()

setUseCache

public void setUseCache(boolean useCache)

isCheckAromaticity

public boolean isCheckAromaticity()

setCheckAromaticity

public void setCheckAromaticity(boolean checkAromaticity)

isEnabled

public boolean isEnabled()

Specified by:

isEnabled in interface ILookupFile

size

public int size()

Specified by:

size in interface ILookupFile