toxTree.tree.rules

Class RuleDescriptor

java.lang.Object

java.util.Observable

toxTree.tree.AbstractRule

toxTree.tree.rules.RuleDescriptor

All Implemented Interfaces:

Serializable, Cloneable, IDecisionRule, XMLSerializable

Direct Known Subclasses:

RuleDescriptorRange, RuleLipinski5

public abstract class RuleDescriptor
extends AbstractRule

An abstract class to allow for descriptor analysis

Author:

Nina Jeliazkova Modified 2005-10-18

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
protected org.openscience.cdk.qsar.IDescriptor	descriptor
protected String	descriptorClass

Fields inherited from class toxTree.tree.AbstractRule

changes, editable, ERR_STRUCTURENOTPREPROCESSED, examples, explanation, id, logger, MSG_NO, MSG_YES, no, residueIDHidden, title

Fields inherited from interface toxTree.core.XMLSerializable

xmltag_CATEGORIES, xmltag_CATEGORY, xmltag_CATEGORYTHRESHOLD, xmltag_CLASS, xmltag_EXPLANATION, xmltag_ID, xmltag_METHOD, xmltag_METHODPARAMETER, xmltag_METHODS, xmltag_NAME, xmltag_RULE, xmltag_RULEEXAMPLE, xmltag_RULES, xmltag_TREEROOT

Constructor Summary

Constructors

Constructor and Description
RuleDescriptor()

Method Summary

Modifier and Type	Method and Description
boolean	equals(Object obj)
org.openscience.cdk.qsar.IDescriptor	getDescriptor()
ambit2.rendering.IAtomContainerHighlights	getSelector()
boolean	isImplemented()
void	setDescriptor(org.openscience.cdk.qsar.IDescriptor descriptor)
boolean	verifyRule(org.openscience.cdk.interfaces.IAtomContainer mol, org.openscience.cdk.interfaces.IAtomContainer selected)

Methods inherited from class toxTree.tree.AbstractRule

addPropertyChangeListener, clearFlags, clone, createRule, fromXML, getEditor, getExampleMolecule, getExamples, getExplanation, getID, getNum, getTitle, hideResiduesID, isEditable, isResidueIDHidden, log, log, log, makeMolecule, removePropertyChangeListener, setEditable, setExampleMolecule, setExamples, setExplanation, setID, setNum, setTitle, toShallowXML, toString, toXML

Methods inherited from class java.util.Observable

addObserver, clearChanged, countObservers, deleteObserver, deleteObservers, hasChanged, notifyObservers, notifyObservers, setChanged

Methods inherited from class java.lang.Object

finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface toxTree.core.IDecisionRule

verifyRule

Field Detail

descriptor

protected transient org.openscience.cdk.qsar.IDescriptor descriptor

descriptorClass

protected String descriptorClass

Constructor Detail

RuleDescriptor

public RuleDescriptor()

Method Detail

getDescriptor

public org.openscience.cdk.qsar.IDescriptor getDescriptor()

setDescriptor

public void setDescriptor(org.openscience.cdk.qsar.IDescriptor descriptor)

isImplemented

public boolean isImplemented()

Specified by:

isImplemented in interface IDecisionRule

Overrides:

isImplemented in class AbstractRule

Returns:

false if the rule is not implemented and true if it is

equals

public boolean equals(Object obj)

Overrides:

equals in class AbstractRule

verifyRule

public boolean verifyRule(org.openscience.cdk.interfaces.IAtomContainer mol,
                          org.openscience.cdk.interfaces.IAtomContainer selected)
                   throws DecisionMethodException

Throws:

DecisionMethodException

getSelector

public ambit2.rendering.IAtomContainerHighlights getSelector()

Specified by:

getSelector in interface IDecisionRule

Overrides:

getSelector in class AbstractRule