toxTree.tree.rules

Class RuleLipinski5

java.lang.Object

java.util.Observable

toxTree.tree.AbstractRule

toxTree.tree.rules.RuleDescriptor

toxTree.tree.rules.RuleLipinski5

All Implemented Interfaces:

Serializable, Cloneable, IDecisionRule, XMLSerializable

public class RuleLipinski5
extends RuleDescriptor

Returns true if all Lipinski Rule of Five are true

Author:

Nina Jeliazkova

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
protected Object[]	params

Fields inherited from class toxTree.tree.rules.RuleDescriptor

descriptor, descriptorClass

Fields inherited from class toxTree.tree.AbstractRule

changes, editable, ERR_STRUCTURENOTPREPROCESSED, examples, explanation, id, logger, MSG_NO, MSG_YES, no, residueIDHidden, title

Fields inherited from interface toxTree.core.XMLSerializable

xmltag_CATEGORIES, xmltag_CATEGORY, xmltag_CATEGORYTHRESHOLD, xmltag_CLASS, xmltag_EXPLANATION, xmltag_ID, xmltag_METHOD, xmltag_METHODPARAMETER, xmltag_METHODS, xmltag_NAME, xmltag_RULE, xmltag_RULEEXAMPLE, xmltag_RULES, xmltag_TREEROOT

Constructor Summary

Constructors

Constructor and Description
RuleLipinski5()

Method Summary

Modifier and Type	Method and Description
boolean	verifyRule(org.openscience.cdk.interfaces.IAtomContainer mol) Returns true if all Lipinski Rule of Five are true

Methods inherited from class toxTree.tree.rules.RuleDescriptor

equals, getDescriptor, getSelector, isImplemented, setDescriptor, verifyRule

Methods inherited from class toxTree.tree.AbstractRule

addPropertyChangeListener, clearFlags, clone, createRule, fromXML, getEditor, getExampleMolecule, getExamples, getExplanation, getID, getNum, getTitle, hideResiduesID, isEditable, isResidueIDHidden, log, log, log, makeMolecule, removePropertyChangeListener, setEditable, setExampleMolecule, setExamples, setExplanation, setID, setNum, setTitle, toShallowXML, toString, toXML

Methods inherited from class java.util.Observable

addObserver, clearChanged, countObservers, deleteObserver, deleteObservers, hasChanged, notifyObservers, notifyObservers, setChanged

Methods inherited from class java.lang.Object

finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

params

protected Object[] params

Constructor Detail

RuleLipinski5

public RuleLipinski5()

Method Detail

verifyRule

public boolean verifyRule(org.openscience.cdk.interfaces.IAtomContainer mol)
                   throws DecisionMethodException

Returns true if all Lipinski Rule of Five are true

Parameters:

mol - org.openscience.cdk.interfaces.AtomContainer

Returns:

rule result, boolean

Throws:

DecisionMethodException