toxtree.data

Class DataModule

java.lang.Object

java.util.Observable

toxtree.data.DataModule

All Implemented Interfaces:

Serializable, Observer

Direct Known Subclasses:

DecisionMethodsDataModule

public abstract class DataModule
extends Observable
implements Serializable, Observer

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
protected BatchProcessing	batch
protected DataContainer	dataContainer
protected ambit2.jchempaint.editor.JChemPaintDialog	jcpDialog
protected org.openscience.cdk.interfaces.IChemModel	jcpModel
protected static Logger	logger
protected int	useDatabase

Constructor Summary

Constructors

Constructor and Description
DataModule(File inputFile)

Method Summary

Modifier and Type	Method and Description
void	batch(BatchProcessing bp)
protected abstract DataContainer	createDataContainer(File inputFile)
void	editMolecule(boolean editable, JFrame frame)
abstract ActionList	getActions()
DataContainer	getDataContainer()
String	showMetabolites()
abstract void	viewMethod(IDecisionMethod method, boolean editable)

Methods inherited from class java.util.Observable

addObserver, clearChanged, countObservers, deleteObserver, deleteObservers, hasChanged, notifyObservers, notifyObservers, setChanged

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Methods inherited from interface java.util.Observer

update

Field Detail

logger

protected static transient Logger logger

dataContainer

protected DataContainer dataContainer

useDatabase

protected int useDatabase

jcpDialog

protected ambit2.jchempaint.editor.JChemPaintDialog jcpDialog

jcpModel

protected org.openscience.cdk.interfaces.IChemModel jcpModel

batch

protected BatchProcessing batch

Constructor Detail

DataModule

public DataModule(File inputFile)

Method Detail

batch

public void batch(BatchProcessing bp)

getDataContainer

public DataContainer getDataContainer()

editMolecule

public void editMolecule(boolean editable,
                         JFrame frame)

getActions

public abstract ActionList getActions()

createDataContainer

protected abstract DataContainer createDataContainer(File inputFile)

viewMethod

public abstract void viewMethod(IDecisionMethod method,
                                boolean editable)
                         throws DecisionMethodException

Throws:

DecisionMethodException

showMetabolites

public String showMetabolites()
                       throws Exception

Throws:

Exception