toxtree.data

Class FilteredMoleculesIterator

java.lang.Object

toxTree.data.MoleculesIterator

toxtree.data.FilteredMoleculesIterator

All Implemented Interfaces:

Iterator, IFilteredMolecules, IMoleculesIterator

public class FilteredMoleculesIterator
extends MoleculesIterator
implements IFilteredMolecules

Field Summary

Fields

Modifier and Type	Field and Description
protected ListOfAtomContainers	activeContainer
protected IObjectFilter	activeFilter
protected Hashtable<IObjectFilter,ListOfAtomContainers>	filteredSets

Fields inherited from class toxTree.data.MoleculesIterator

containers, currentNo, filename, logger, status

Fields inherited from interface toxTree.core.IMoleculesIterator

MSG_EMPTYFILE, MSG_ERRORONOPEN, MSG_ERRORONSAVE, MSG_OPENSUCCESS, MSG_SAVESUCCESS, MSG_UNSUPPORTEDFORMAT

Constructor Summary

Constructors

Constructor and Description
FilteredMoleculesIterator()

Method Summary

Modifier and Type	Method and Description
void	addFilter(IObjectFilter filter) Adds filtered set of IAtomContainer
void	addMolecule(org.openscience.cdk.interfaces.IAtomContainer mol)
void	clear()
protected void	deleteAllFilters()
void	deleteFilter(IObjectFilter filter) Delete filtered set of IAtomContainer
protected ListOfAtomContainers	filter(IObjectFilter filter)
protected ListOfAtomContainers	getActiveContainer()
protected ListOfAtomContainers	getContainers()
boolean	selectFilter(Component parentComponent)
protected void	setActiveContainer(ListOfAtomContainers activeContainer)
boolean	setFilter(IObjectFilter filter, boolean update) Sets the current set of molecules.
void	setMolecules(List molecules)
String	toString()
void	update(IObjectFilter filter)

Methods inherited from class toxTree.data.MoleculesIterator

first, getAtomContainer, getCurrentNo, getFilename, getMolecule, getMoleculeForEdit, getMolecules, getMoleculesCount, getSetOfAtomContainers, getStatus, hasNext, isReading, isWriting, last, next, openFile, prev, remove, saveFile, setCurrentNo, setDone, setMolecule, setReading, setWriting, useIterativeReader

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface toxTree.core.IMoleculesIterator

first, getAtomContainer, getCurrentNo, getFilename, getMolecule, getMoleculeForEdit, getMolecules, getMoleculesCount, getStatus, isReading, isWriting, last, openFile, prev, saveFile, setCurrentNo, setDone, setMolecule, setReading, setWriting

Methods inherited from interface java.util.Iterator

forEachRemaining, hasNext, next, remove

Field Detail

filteredSets

protected Hashtable<IObjectFilter,ListOfAtomContainers> filteredSets

activeContainer

protected ListOfAtomContainers activeContainer

activeFilter

protected IObjectFilter activeFilter

Constructor Detail

FilteredMoleculesIterator

public FilteredMoleculesIterator()

Method Detail

filter

protected ListOfAtomContainers filter(IObjectFilter filter)

deleteAllFilters

protected void deleteAllFilters()

addFilter

public void addFilter(IObjectFilter filter)
               throws FilterException

Description copied from interface: IFilteredMolecules

Adds filtered set of IAtomContainer

Specified by:

addFilter in interface IFilteredMolecules

Throws:

FilterException

deleteFilter

public void deleteFilter(IObjectFilter filter)
                  throws FilterException

Description copied from interface: IFilteredMolecules

Delete filtered set of IAtomContainer

Specified by:

deleteFilter in interface IFilteredMolecules

Throws:

FilterException

setFilter

public boolean setFilter(IObjectFilter filter,
                         boolean update)
                  throws FilterException

Sets the current set of molecules. If null, this will be the parent set.

Specified by:

setFilter in interface IFilteredMolecules

Throws:

FilterException

update

public void update(IObjectFilter filter)
            throws FilterException

Throws:

FilterException

addMolecule

public void addMolecule(org.openscience.cdk.interfaces.IAtomContainer mol)

Specified by:

addMolecule in interface IMoleculesIterator

Overrides:

addMolecule in class MoleculesIterator

setMolecules

public void setMolecules(List molecules)

Specified by:

setMolecules in interface IMoleculesIterator

Overrides:

setMolecules in class MoleculesIterator

Parameters:

molecules - The molecules to set.

clear

public void clear()

Specified by:

clear in interface IMoleculesIterator

Overrides:

clear in class MoleculesIterator

getContainers

protected ListOfAtomContainers getContainers()

Overrides:

getContainers in class MoleculesIterator

getActiveContainer

protected ListOfAtomContainers getActiveContainer()

setActiveContainer

protected void setActiveContainer(ListOfAtomContainers activeContainer)

selectFilter

public boolean selectFilter(Component parentComponent)
                     throws FilterException

Throws:

FilterException

toString

public String toString()

Overrides:

toString in class MoleculesIterator