toxtree.data

Class ToxTreeModule

java.lang.Object

java.util.Observable

toxtree.data.DataModule

toxtree.data.DecisionMethodsDataModule

toxtree.data.ToxTreeModule

All Implemented Interfaces:

Serializable, Observer

public class ToxTreeModule
extends DecisionMethodsDataModule

Contains data essential for ToxTreeApp application

• the current method IDecisionMethod
• the result IDecisionResult
• the list of available methods IDecisionMethodsList
• the data DecisionMethodData
• the tree data DecisionMethodData
• the batch processing object ToxTreeBatchProcessing

Also contains some UI frames :

• a Frame to view a decision tree TreeFrame
• a Frame to edit a decision tree toxTree.ui.tree.EditTreeFrame
• a dialog with structure diagram editor JChemPaintDialog
• and a org.openscience.cdk.applications.jchempaint.JChemPaintModel

Author:

Nina Jeliazkova
Modified 2005-8-1

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
protected MetabolyteRecycler	listener

Fields inherited from class toxtree.data.DecisionMethodsDataModule

editor, methods, rules, treeResult

Fields inherited from class toxtree.data.DataModule

batch, dataContainer, jcpDialog, jcpModel, logger, useDatabase

Constructor Summary

Constructors

Constructor and Description
ToxTreeModule(JFrame frame, File inputFile, DecisionMethodsList methods)

Method Summary

Modifier and Type	Method and Description
void	batch(BatchProcessing bp)
protected DataContainer	createDataContainer(File inputFile)
ActionList	getActions()
void	setRules(IDecisionMethod rules)
String	showMetabolites(RuleResult ruleResult)
void	update(Observable o, Object arg)
void	viewMethod(boolean editable)

Methods inherited from class toxtree.data.DecisionMethodsDataModule

addResultPropertyChangeListener, addRulesPropertyChangeListener, classify, classifyAll, clearFilters, clearResults, explain, getMethods, getRules, getSelectedRules, getTreeResult, gotoRecord, lookup, selectFilter, setMethods, viewMethod, viewMethod

Methods inherited from class toxtree.data.DataModule

editMolecule, getDataContainer, showMetabolites

Methods inherited from class java.util.Observable

addObserver, clearChanged, countObservers, deleteObserver, deleteObservers, hasChanged, notifyObservers, notifyObservers, setChanged

Methods inherited from class java.lang.Object

clone, equals, finalize, getClass, hashCode, notify, notifyAll, toString, wait, wait, wait

Field Detail

listener

protected MetabolyteRecycler listener

Constructor Detail

ToxTreeModule

public ToxTreeModule(JFrame frame,
                     File inputFile,
                     DecisionMethodsList methods)

Method Detail

createDataContainer

protected DataContainer createDataContainer(File inputFile)

Overrides:

createDataContainer in class DecisionMethodsDataModule

update

public void update(Observable o,
                   Object arg)

Specified by:

update in interface Observer

Overrides:

update in class DecisionMethodsDataModule

batch

public void batch(BatchProcessing bp)

Overrides:

batch in class DataModule

getActions

public ActionList getActions()

Overrides:

getActions in class DecisionMethodsDataModule

viewMethod

public void viewMethod(boolean editable)

setRules

public void setRules(IDecisionMethod rules)

Overrides:

setRules in class DecisionMethodsDataModule

showMetabolites

public String showMetabolites(RuleResult ruleResult)
                       throws Exception

Throws:

Exception