public class RuleKroesFig1Q1 extends RuleSubstructures
| Modifier and Type | Field and Description |
|---|---|
static String |
config |
static String[] |
halogens |
static String[] |
me_essential |
static String[] |
me_nonessential |
ids, MSG_HASGROUPchanges, editable, ERR_STRUCTURENOTPREPROCESSED, examples, explanation, id, logger, MSG_NO, MSG_YES, no, residueIDHidden, titlexmltag_CATEGORIES, xmltag_CATEGORY, xmltag_CATEGORYTHRESHOLD, xmltag_CLASS, xmltag_EXPLANATION, xmltag_ID, xmltag_METHOD, xmltag_METHODPARAMETER, xmltag_METHODS, xmltag_NAME, xmltag_RULE, xmltag_RULEEXAMPLE, xmltag_RULES, xmltag_TREEROOT| Constructor and Description |
|---|
RuleKroesFig1Q1() |
RuleKroesFig1Q1(File file) |
RuleKroesFig1Q1(InputStream stream,
String format) |
| Modifier and Type | Method and Description |
|---|---|
static org.openscience.cdk.isomorphism.matchers.IQueryAtomContainer |
createQueryContainer(org.openscience.cdk.interfaces.IAtomContainer container) |
protected static InputStream |
getConfiguration() |
protected void |
init() |
boolean |
isImplemented() |
protected void |
readStream(InputStream fStream,
String format) |
boolean |
verifyRule(org.openscience.cdk.interfaces.IAtomContainer mol)
This is the core of a
IDecisionRule behaviour. |
addSubstructure, clearSubstructures, equals, getIds, getQuery, getSubstructure, getSubstructures, getSubstructuresCount, initQuery, removeSubstructure, setIds, setQuery, setSubstructure, verifyRulegetSelectoraddPropertyChangeListener, clearFlags, clone, createRule, fromXML, getEditor, getExampleMolecule, getExamples, getExplanation, getID, getNum, getTitle, hideResiduesID, isEditable, isResidueIDHidden, log, log, log, makeMolecule, removePropertyChangeListener, setEditable, setExampleMolecule, setExamples, setExplanation, setID, setNum, setTitle, toShallowXML, toString, toXMLaddObserver, clearChanged, countObservers, deleteObserver, deleteObservers, hasChanged, notifyObservers, notifyObservers, setChangedfinalize, getClass, hashCode, notify, notifyAll, wait, wait, waitaddPropertyChangeListener, clearFlags, clone, getEditor, getExampleMolecule, getExplanation, getID, getNum, getSelector, getTitle, hideResiduesID, isEditable, isResidueIDHidden, removePropertyChangeListener, setEditable, setExampleMolecule, setExplanation, setID, setNum, setTitle, toStringpublic static transient String[] halogens
public static transient String[] me_essential
public static transient String[] me_nonessential
public static transient String config
public RuleKroesFig1Q1(InputStream stream, String format) throws Exception
Exceptionprotected void init()
protected void readStream(InputStream fStream, String format)
public static org.openscience.cdk.isomorphism.matchers.IQueryAtomContainer createQueryContainer(org.openscience.cdk.interfaces.IAtomContainer container)
protected static InputStream getConfiguration()
public boolean isImplemented()
isImplemented in interface IDecisionRuleisImplemented in class RuleSubstructurespublic boolean verifyRule(org.openscience.cdk.interfaces.IAtomContainer mol)
throws DecisionMethodException
IDecisionRuleIDecisionRule behaviour. The method returns true
if the answer of the rule is YES for the analyzed molecule org.openscience.cdk.interfaces.AtomContainer and FALSE
if the answer of the rule is NO for the analyzed molecule org.openscience.cdk.interfaces.AtomContainer??mol - org.openscience.cdk.interfaces.AtomContainerDecisionMethodExceptionCopyright © 2004–2018 Ideaconsult Ltd. All rights reserved.