toxtree.plugins.smartcyp

Class SMARTCypTreeResult

java.lang.Object

toxTree.tree.TreeResult

toxtree.plugins.smartcyp.SMARTCypTreeResult

All Implemented Interfaces:

Serializable, Comparable, IDecisionMethodPrority, IDecisionResult, IProgressStatus

public class SMARTCypTreeResult
extends TreeResult

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
static String	FORMAT

Fields inherited from class toxTree.tree.TreeResult

assignedCategories, category, changes, decisionMethod, logger, notify, originalMolecule, ruleResults, status, web

Constructor Summary

Constructors

Constructor and Description
SMARTCypTreeResult()

Method Summary

Modifier and Type	Method and Description
protected boolean	acceptCategory(IDecisionCategory category)
void	assignResult(org.openscience.cdk.interfaces.IAtomContainer mol)
protected ArrayList<org.openscience.cdk.interfaces.IAtomContainer>	getAllAssignedMolecules()
protected Object	getAtomScoresOfRank(org.openscience.cdk.interfaces.IAtomContainer moleculeKU, Integer rank, dk.smartcyp.core.MoleculeKU.SMARTCYP_PROPERTY property)
Hashtable<String,String>	getExplanation(org.openscience.cdk.interfaces.IAtomContainer mol)
List<CategoryFilter>	getFilters()
List<ambit2.base.data.Property>	getResultProperties() Returns the properties to contain the result in Property class
String[]	getResultPropertyNames() Returns the name of the property that will contain the result

Methods inherited from class toxTree.tree.TreeResult

addCategory, addPropertyChangeListener, addRuleResult, classify, clear, clearResults, compareTo, equals, explain, fireChangeEvent, firePropertyChangeEvent, firePropertyChangeEvent, firePropertyChangeEvent, getAssignedCategories, getCategory, getCategory, getDecisionMethod, getMolecule, getOriginalMolecule, getPriority, getPropertyChangeListeners, getReference, getRule, getRuleResult, getRuleResults, getRuleResultsCount, hilightAlert, hilightAlert, isError, isEstimated, isEstimating, isNotify, removePropertyChangeListener, setCategory, setDecisionMethod, setError, setEstimated, setEstimated, setEstimating, setMolecule, setNotify, setOriginalMolecule, setPercentEstimated, setPriority, setRuleResults, setSilent, setWeb, toString

Methods inherited from class java.lang.Object

clone, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

FORMAT

public static final String FORMAT

See Also:

Constant Field Values

Constructor Detail

SMARTCypTreeResult

public SMARTCypTreeResult()

Method Detail

assignResult

public void assignResult(org.openscience.cdk.interfaces.IAtomContainer mol)
                  throws DecisionResultException

Specified by:

assignResult in interface IDecisionResult

Overrides:

assignResult in class TreeResult

Throws:

DecisionResultException

getResultPropertyNames

public String[] getResultPropertyNames()

Description copied from interface: IDecisionResult

Returns the name of the property that will contain the result

Specified by:

getResultPropertyNames in interface IDecisionResult

Overrides:

getResultPropertyNames in class TreeResult

getResultProperties

public List<ambit2.base.data.Property> getResultProperties()
                                                    throws net.idea.modbcum.i.exceptions.AmbitException

Description copied from interface: IDecisionResult

Returns the properties to contain the result in Property class

Specified by:

getResultProperties in interface IDecisionResult

Overrides:

getResultProperties in class TreeResult

Returns:

Throws:

net.idea.modbcum.i.exceptions.AmbitException

getAtomScoresOfRank

protected Object getAtomScoresOfRank(org.openscience.cdk.interfaces.IAtomContainer moleculeKU,
                                     Integer rank,
                                     dk.smartcyp.core.MoleculeKU.SMARTCYP_PROPERTY property)

acceptCategory

protected boolean acceptCategory(IDecisionCategory category)

Overrides:

acceptCategory in class TreeResult

getAllAssignedMolecules

protected ArrayList<org.openscience.cdk.interfaces.IAtomContainer> getAllAssignedMolecules()

getExplanation

public Hashtable<String,String> getExplanation(org.openscience.cdk.interfaces.IAtomContainer mol)
                                        throws DecisionResultException

Throws:

DecisionResultException

getFilters

public List<CategoryFilter> getFilters()

Specified by:

getFilters in interface IDecisionResult

Overrides:

getFilters in class TreeResult