verhaar.rules

Class Rule11

java.lang.Object

java.util.Observable

toxTree.tree.AbstractRule

toxTree.tree.rules.RuleElements

verhaar.rules.helper.RuleElementsCounter

verhaar.rules.Rule11

All Implemented Interfaces:

Serializable, Cloneable, IDecisionRule, IImplementationDetails, XMLSerializable, IAlertCounter

public class Rule11
extends RuleElementsCounter

Does not contain I.

Author:

Nina Jeliazkova jeliazkova.nina@gmail.com Modified July 12, 2011

See Also:

Serialized Form

Field Summary

Fields inherited from class verhaar.rules.helper.RuleElementsCounter

alertsCounter

Fields inherited from class toxTree.tree.rules.RuleElements

comparison, elements, mode, modeAllSpecifiedElements, modeAnySpecifiedElements, modeOnlySpecifiedElements

Fields inherited from class toxTree.tree.AbstractRule

changes, editable, ERR_STRUCTURENOTPREPROCESSED, examples, explanation, id, logger, MSG_NO, MSG_YES, no, residueIDHidden, title

Fields inherited from interface toxTree.core.XMLSerializable

xmltag_CATEGORIES, xmltag_CATEGORY, xmltag_CATEGORYTHRESHOLD, xmltag_CLASS, xmltag_EXPLANATION, xmltag_ID, xmltag_METHOD, xmltag_METHODPARAMETER, xmltag_METHODS, xmltag_NAME, xmltag_RULE, xmltag_RULEEXAMPLE, xmltag_RULES, xmltag_TREEROOT

Constructor Summary

Constructors

Constructor and Description
Rule11()

Method Summary

Modifier and Type	Method and Description
void	select(org.openscience.cdk.interfaces.IAtomContainer mol, org.openscience.cdk.interfaces.IAtomContainer selected)
boolean	verifyRule(org.openscience.cdk.interfaces.IAtomContainer mol) This is the core of a IDecisionRule behaviour.

Methods inherited from class verhaar.rules.helper.RuleElementsCounter

getImplementationDetails, incrementCounter

Methods inherited from class toxTree.tree.rules.RuleElements

addElement, contains, equals, getElements, gethalogens, getMode, getSelector, getTitle, hasOnlySpecifiedElements, isImplemented, removeElement, setComparisonMode, setElements, setHalogens, setHalogens, setMode, verifyRule

Methods inherited from class toxTree.tree.AbstractRule

addPropertyChangeListener, clearFlags, clone, createRule, fromXML, getEditor, getExampleMolecule, getExamples, getExplanation, getID, getNum, hideResiduesID, isEditable, isResidueIDHidden, log, log, log, makeMolecule, removePropertyChangeListener, setEditable, setExampleMolecule, setExamples, setExplanation, setID, setNum, setTitle, toShallowXML, toString, toXML

Methods inherited from class java.util.Observable

addObserver, clearChanged, countObservers, deleteObserver, deleteObservers, hasChanged, notifyObservers, notifyObservers, setChanged

Methods inherited from class java.lang.Object

finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

Rule11

public Rule11()

Method Detail

verifyRule

public boolean verifyRule(org.openscience.cdk.interfaces.IAtomContainer mol)
                   throws DecisionMethodException

Description copied from interface: IDecisionRule

This is the core of a IDecisionRule behaviour. The method returns true if the answer of the rule is YES for the analyzed molecule org.openscience.cdk.interfaces.AtomContainer and FALSE if the answer of the rule is NO for the analyzed molecule org.openscience.cdk.interfaces.AtomContainer??

Specified by:

verifyRule in interface IDecisionRule

Overrides:

verifyRule in class RuleElementsCounter

Parameters:

mol - org.openscience.cdk.interfaces.AtomContainer

Returns:

rule result, boolean

Throws:

DecisionMethodException

select

public void select(org.openscience.cdk.interfaces.IAtomContainer mol,
                   org.openscience.cdk.interfaces.IAtomContainer selected)

Overrides:

select in class RuleElements