com.molecularnetworks.start.rules

Class RuleTwoOrMoreRings

java.lang.Object

java.util.Observable

toxTree.tree.AbstractRule

com.molecularnetworks.start.rules.RuleTwoOrMoreRings

All Implemented Interfaces:

Serializable, Cloneable, IDecisionRule, XMLSerializable

public class RuleTwoOrMoreRings
extends AbstractRule

Biodegradation rule for chemicals with two or more rings.

Version:

$Id: RuleTwoOrMoreRings.java 936 2008-12-04 17:43:31Z joerg $

Author:

Molecular Networks, $Author: joerg $

See Also:

Serialized Form

Field Summary

Fields inherited from class toxTree.tree.AbstractRule

changes, editable, ERR_STRUCTURENOTPREPROCESSED, examples, explanation, id, logger, MSG_NO, MSG_YES, no, residueIDHidden, title

Fields inherited from interface toxTree.core.XMLSerializable

xmltag_CATEGORIES, xmltag_CATEGORY, xmltag_CATEGORYTHRESHOLD, xmltag_CLASS, xmltag_EXPLANATION, xmltag_ID, xmltag_METHOD, xmltag_METHODPARAMETER, xmltag_METHODS, xmltag_NAME, xmltag_RULE, xmltag_RULEEXAMPLE, xmltag_RULES, xmltag_TREEROOT

Constructor Summary

Constructors

Constructor and Description
RuleTwoOrMoreRings() Default constructor

Method Summary

Modifier and Type	Method and Description
boolean	isImplemented() Overrides the default behaviour.
boolean	verifyRule(org.openscience.cdk.interfaces.IAtomContainer mol) Overrides the default IDecisionRule behaviour.

Methods inherited from class toxTree.tree.AbstractRule

addPropertyChangeListener, clearFlags, clone, createRule, equals, fromXML, getEditor, getExampleMolecule, getExamples, getExplanation, getID, getNum, getSelector, getTitle, hideResiduesID, isEditable, isResidueIDHidden, log, log, log, makeMolecule, removePropertyChangeListener, setEditable, setExampleMolecule, setExamples, setExplanation, setID, setNum, setTitle, toShallowXML, toString, toXML

Methods inherited from class java.util.Observable

addObserver, clearChanged, countObservers, deleteObserver, deleteObservers, hasChanged, notifyObservers, notifyObservers, setChanged

Methods inherited from class java.lang.Object

finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

RuleTwoOrMoreRings

public RuleTwoOrMoreRings()

Default constructor

Method Detail

isImplemented

public boolean isImplemented()

Overrides the default behaviour. Returns always TRUE.

Specified by:

isImplemented in interface IDecisionRule

Overrides:

isImplemented in class AbstractRule

Returns:

is implemented result, boolean

verifyRule

public boolean verifyRule(org.openscience.cdk.interfaces.IAtomContainer mol)
                   throws DecisionMethodException

Overrides the default IDecisionRule behaviour. Returns TRUE, if the answer of the rule is YES for the analyzed molecule org.openscience.cdk.interfaces.AtomContainer Returns FALSE, if the answer of the rule is NO for the analyzed molecule org.openscience.cdk.interfaces.AtomContainer

Parameters:

mol - org.openscience.cdk.interfaces.AtomContainer

Returns:

rule result, boolean

Throws:

{@link - DecisionMethodException}

DecisionMethodException