eye.rules

Class Rule38

java.lang.Object

java.util.Observable

toxTree.tree.AbstractRule

eye.rules.Rule13_AliphaticMonoalcohols

eye.rules.Rule38

All Implemented Interfaces:

Serializable, Cloneable, IDecisionRule, XMLSerializable

public class Rule38
extends Rule13_AliphaticMonoalcohols

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
static String	MSG38

Fields inherited from class eye.rules.Rule13_AliphaticMonoalcohols

smartsPattern

Fields inherited from class toxTree.tree.AbstractRule

changes, editable, ERR_STRUCTURENOTPREPROCESSED, examples, explanation, id, logger, MSG_NO, MSG_YES, no, residueIDHidden, title

Fields inherited from interface toxTree.core.XMLSerializable

xmltag_CATEGORIES, xmltag_CATEGORY, xmltag_CATEGORYTHRESHOLD, xmltag_CLASS, xmltag_EXPLANATION, xmltag_ID, xmltag_METHOD, xmltag_METHODPARAMETER, xmltag_METHODS, xmltag_NAME, xmltag_RULE, xmltag_RULEEXAMPLE, xmltag_RULES, xmltag_TREEROOT

Constructor Summary

Constructors

Constructor and Description
Rule38()

Method Summary

Modifier and Type	Method and Description
protected boolean	acceptSubstituent(org.openscience.cdk.interfaces.IAtomContainer m)
ambit2.rendering.IAtomContainerHighlights	getSelector()
boolean	verifyRule(org.openscience.cdk.interfaces.IAtomContainer mol) This is the core of a IDecisionRule behaviour.

Methods inherited from class eye.rules.Rule13_AliphaticMonoalcohols

countChain, extractChains, getMaxChainLength, getMinChainLength, isImplemented

Methods inherited from class toxTree.tree.AbstractRule

addPropertyChangeListener, clearFlags, clone, createRule, equals, fromXML, getEditor, getExampleMolecule, getExamples, getExplanation, getID, getNum, getTitle, hideResiduesID, isEditable, isResidueIDHidden, log, log, log, makeMolecule, removePropertyChangeListener, setEditable, setExampleMolecule, setExamples, setExplanation, setID, setNum, setTitle, toShallowXML, toString, toXML

Methods inherited from class java.util.Observable

addObserver, clearChanged, countObservers, deleteObserver, deleteObservers, hasChanged, notifyObservers, notifyObservers, setChanged

Methods inherited from class java.lang.Object

finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

MSG38

public static final String MSG38

See Also:

Constant Field Values

Constructor Detail

Rule38

public Rule38()

Method Detail

verifyRule

public boolean verifyRule(org.openscience.cdk.interfaces.IAtomContainer mol)
                   throws DecisionMethodException

Description copied from interface: IDecisionRule

This is the core of a IDecisionRule behaviour. The method returns true if the answer of the rule is YES for the analyzed molecule org.openscience.cdk.interfaces.AtomContainer and FALSE if the answer of the rule is NO for the analyzed molecule org.openscience.cdk.interfaces.AtomContainer??

Specified by:

verifyRule in interface IDecisionRule

Overrides:

verifyRule in class Rule13_AliphaticMonoalcohols

Parameters:

mol - org.openscience.cdk.interfaces.AtomContainer

Returns:

rule result, boolean

Throws:

DecisionMethodException

acceptSubstituent

protected boolean acceptSubstituent(org.openscience.cdk.interfaces.IAtomContainer m)
                             throws DecisionMethodException

Throws:

DecisionMethodException

getSelector

public ambit2.rendering.IAtomContainerHighlights getSelector()

Specified by:

getSelector in interface IDecisionRule

Overrides:

getSelector in class Rule13_AliphaticMonoalcohols