mutant.rules

Class MutantTreeResult

java.lang.Object

toxTree.tree.TreeResult

mutant.rules.MutantTreeResult

All Implemented Interfaces:

Serializable, Comparable, IDecisionMethodPrority, IDecisionResult, IProgressStatus

public class MutantTreeResult
extends TreeResult

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
protected String[]	descriptors
protected String[]	qsar
protected static String	SUFFIX

Fields inherited from class toxTree.tree.TreeResult

assignedCategories, category, changes, decisionMethod, logger, notify, originalMolecule, ruleResults, status, web

Constructor Summary

Constructors

Constructor and Description
MutantTreeResult()

Method Summary

Modifier and Type	Method and Description
protected boolean	acceptCategory(IDecisionCategory category)
void	addRuleResult(IDecisionRule rule, boolean value, org.openscience.cdk.interfaces.IAtomContainer molecule)
void	assignResult(org.openscience.cdk.interfaces.IAtomContainer mol)
protected ArrayList<org.openscience.cdk.interfaces.IAtomContainer>	getAllAssignedMolecules()
Hashtable<String,String>	getExplanation(org.openscience.cdk.interfaces.IAtomContainer mol)
List<CategoryFilter>	getFilters()
List<ambit2.base.data.Property>	getResultProperties() Returns the properties to contain the result in Property class
String[]	getResultPropertyNames() Returns the name of the property that will contain the result
protected void	removeCategory(IDecisionCategory category)

Methods inherited from class toxTree.tree.TreeResult

addCategory, addPropertyChangeListener, classify, clear, clearResults, compareTo, equals, explain, fireChangeEvent, firePropertyChangeEvent, firePropertyChangeEvent, firePropertyChangeEvent, getAssignedCategories, getCategory, getCategory, getDecisionMethod, getMolecule, getOriginalMolecule, getPriority, getPropertyChangeListeners, getReference, getRule, getRuleResult, getRuleResults, getRuleResultsCount, hilightAlert, hilightAlert, isError, isEstimated, isEstimating, isNotify, removePropertyChangeListener, setCategory, setDecisionMethod, setError, setEstimated, setEstimated, setEstimating, setMolecule, setNotify, setOriginalMolecule, setPercentEstimated, setPriority, setRuleResults, setSilent, setWeb, toString

Methods inherited from class java.lang.Object

clone, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

SUFFIX

protected static String SUFFIX

descriptors

protected String[] descriptors

qsar

protected String[] qsar

Constructor Detail

MutantTreeResult

public MutantTreeResult()

Method Detail

assignResult

public void assignResult(org.openscience.cdk.interfaces.IAtomContainer mol)
                  throws DecisionResultException

Specified by:

assignResult in interface IDecisionResult

Overrides:

assignResult in class TreeResult

Throws:

DecisionResultException

getResultProperties

public List<ambit2.base.data.Property> getResultProperties()
                                                    throws net.idea.modbcum.i.exceptions.AmbitException

Description copied from interface: IDecisionResult

Returns the properties to contain the result in Property class

Specified by:

getResultProperties in interface IDecisionResult

Overrides:

getResultProperties in class TreeResult

Returns:

Throws:

net.idea.modbcum.i.exceptions.AmbitException

getResultPropertyNames

public String[] getResultPropertyNames()

Description copied from interface: IDecisionResult

Returns the name of the property that will contain the result

Specified by:

getResultPropertyNames in interface IDecisionResult

Overrides:

getResultPropertyNames in class TreeResult

getAllAssignedMolecules

protected ArrayList<org.openscience.cdk.interfaces.IAtomContainer> getAllAssignedMolecules()

getExplanation

public Hashtable<String,String> getExplanation(org.openscience.cdk.interfaces.IAtomContainer mol)
                                        throws DecisionResultException

Throws:

DecisionResultException

addRuleResult

public void addRuleResult(IDecisionRule rule,
                          boolean value,
                          org.openscience.cdk.interfaces.IAtomContainer molecule)
                   throws DecisionResultException

Specified by:

addRuleResult in interface IDecisionResult

Overrides:

addRuleResult in class TreeResult

Throws:

DecisionResultException

acceptCategory

protected boolean acceptCategory(IDecisionCategory category)

Overrides:

acceptCategory in class TreeResult

removeCategory

protected void removeCategory(IDecisionCategory category)

getFilters

public List<CategoryFilter> getFilters()

Specified by:

getFilters in interface IDecisionResult

Overrides:

getFilters in class TreeResult