Serialized Form

Package com.molecularnetworks.start

Class com.molecularnetworks.start.BiodgeradationRules extends UserDefinedTree implements Serializable

serialVersionUID:

3790027027577230994L

Serialized Fields

residuesIDVisible

boolean residuesIDVisible

interactive

boolean interactive

Package com.molecularnetworks.start.categories

Class com.molecularnetworks.start.categories.CategoryBiodegradable extends DefaultCategory implements Serializable

serialVersionUID:

315431724282932716L

Class com.molecularnetworks.start.categories.CategoryPersistent extends DefaultCategory implements Serializable

serialVersionUID:

2288663059442529409L

Class com.molecularnetworks.start.categories.CategoryUnknown extends DefaultCategory implements Serializable

Package com.molecularnetworks.start.rules

Class com.molecularnetworks.start.rules.RuleAlcohols extends RuleSMARTSubstructure implements Serializable

serialVersionUID:

147969301298783746L

Class com.molecularnetworks.start.rules.RuleAldehyde extends RuleSMARTSubstructure implements Serializable

serialVersionUID:

-1589466114886371526L

Class com.molecularnetworks.start.rules.RuleAliphaticCyclicNoBranches extends RuleSMARTSubstructure implements Serializable

serialVersionUID:

5563610494405030477L

Class com.molecularnetworks.start.rules.RuleAliphaticEther extends RuleSMARTSubstructure implements Serializable

serialVersionUID:

-6146293767026160227L

Class com.molecularnetworks.start.rules.RuleAliphaticFusedRingsNonBranched extends RuleSMARTSubstructure implements Serializable

serialVersionUID:

-5200777251403091926L

Class com.molecularnetworks.start.rules.RuleAlyphaticSulphonicAcids extends RuleSMARTSubstructure implements Serializable

serialVersionUID:

6538233414546134030L

Class com.molecularnetworks.start.rules.RuleAminoAcids extends RuleSMARTSubstructure implements Serializable

serialVersionUID:

67259564133839114L

Class com.molecularnetworks.start.rules.RuleAromaticHalogen extends RuleSMARTSubstructure implements Serializable

serialVersionUID:

5654110800755729796L

Class com.molecularnetworks.start.rules.RuleAromaticNGroups extends RuleSMARTSubstructure implements Serializable

serialVersionUID:

-1735736324387976319L

Class com.molecularnetworks.start.rules.RuleAromaticSulphonicAcid extends RuleSMARTSubstructure implements Serializable

serialVersionUID:

-4951096883397535662L

Class com.molecularnetworks.start.rules.RuleAzoGroup extends RuleSMARTSubstructure implements Serializable

serialVersionUID:

5443054594102675597L

Class com.molecularnetworks.start.rules.RuleCyanoGroupOnMoreThanEightAtomsChain extends RuleSMARTSubstructure implements Serializable

serialVersionUID:

-8650746019973342262L

Class com.molecularnetworks.start.rules.RuleEpoxide extends RuleSMARTSubstructure implements Serializable

serialVersionUID:

-8975105151159486366L

Class com.molecularnetworks.start.rules.RuleEsters extends RuleSMARTSubstructure implements Serializable

serialVersionUID:

-5058885959824507696L

Class com.molecularnetworks.start.rules.RuleFormaldehyde extends RuleSMARTSubstructure implements Serializable

serialVersionUID:

903877425079350836L

Class com.molecularnetworks.start.rules.RuleHalogenSubstitutedBranched extends RuleSMARTSubstructure implements Serializable

serialVersionUID:

-6527506785078121094L

Class com.molecularnetworks.start.rules.RuleKetone extends RuleSMARTSubstructure implements Serializable

serialVersionUID:

-121797072830479928L

Class com.molecularnetworks.start.rules.RuleMoreThanTwoHydroxyOnAromaticRing extends RuleSMARTSubstructure implements Serializable

serialVersionUID:

-6993856558017848786L

Class com.molecularnetworks.start.rules.RuleNitrile extends RuleSMARTSubstructure implements Serializable

serialVersionUID:

2866525745824191317L

Class com.molecularnetworks.start.rules.RuleNNitroso extends RuleSMARTSubstructure implements Serializable

serialVersionUID:

5273428658329365629L

Class com.molecularnetworks.start.rules.RuleOneHalogenOnUnbranched extends RuleSMARTSubstructure implements Serializable

serialVersionUID:

3820228603393931530L

Class com.molecularnetworks.start.rules.RulePhosphateEsters extends RuleSMARTSubstructure implements Serializable

serialVersionUID:

-2427824181349541804L

Class com.molecularnetworks.start.rules.RulePyridineRing extends RuleSMARTSubstructure implements Serializable

serialVersionUID:

-377402164851851253L

Class com.molecularnetworks.start.rules.RuleTerminalIsopropylNonCyclic extends RuleSMARTSubstructure implements Serializable

serialVersionUID:

-6195321815817952516L

Class com.molecularnetworks.start.rules.RuleTerminalTertButyl extends RuleSMARTSubstructure implements Serializable

serialVersionUID:

7433915475793045786L

Class com.molecularnetworks.start.rules.RuleTertiaryAmine extends RuleSMARTSubstructure implements Serializable

serialVersionUID:

2308435762805621276L

Class com.molecularnetworks.start.rules.RuleTriazineRing extends RuleSMARTSubstructure implements Serializable

serialVersionUID:

3244371114565022733L

Class com.molecularnetworks.start.rules.RuleTrifluoromethyl extends RuleSMARTSubstructure implements Serializable

serialVersionUID:

-5128660426369886557L

Class com.molecularnetworks.start.rules.RuleTwoHalogensOnUnbranchedNonCyclic extends RuleSMARTSubstructure implements Serializable

serialVersionUID:

-4863820045166489254L

Class com.molecularnetworks.start.rules.RuleTwoOrMoreRings extends AbstractRule implements Serializable

serialVersionUID:

-7413443885130587425L

Class com.molecularnetworks.start.rules.RuleTwoTerminalDiaminoGroupsOnNonCyclic extends RuleSMARTSubstructure implements Serializable

serialVersionUID:

-6578201024190083705L

Class com.molecularnetworks.start.rules.RuleTwoTerminalDoubleBondsOnUnbranched extends RuleSMARTSubstructure implements Serializable

serialVersionUID:

5246790669401145621L

Package cramer2

Class cramer2.CramerRulesWithExtensions extends UserDefinedTree implements Serializable

serialVersionUID:

2709354449315583323L

Serialized Fields

residuesIDVisible

boolean residuesIDVisible

Package cramer2.categories

Class cramer2.categories.CramerClass1 extends NonToxicCategory implements Serializable

serialVersionUID:

-3316295137722917583L

Class cramer2.categories.CramerClass2 extends DefaultCategory implements Serializable

serialVersionUID:

-3590968254184549257L

Class cramer2.categories.CramerClass3 extends ToxicCategory implements Serializable

serialVersionUID:

-6261392771965489148L

Class cramer2.categories.CramerTreeResult extends TreeResult implements Serializable

serialVersionUID:

-7883635712321700678L

Package cramer2.rules

Class cramer2.rules.RuleBenzeneAnalogues extends RuleSMARTSubstructure implements Serializable

serialVersionUID:

-6600673583244915910L

Class cramer2.rules.RuleDivalentSulphur extends RuleSMARTSubstructure implements Serializable

serialVersionUID:

8947181147979900214L

Class cramer2.rules.RuleFreeABUnsaturatedHetero extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

0L

Class cramer2.rules.RuleHasOnlySaltSulphonateSulphate extends RuleOnlyAllowedSubstructures implements Serializable

serialVersionUID:

7313277537215733933L

Serialized Fields

Me

String[] Me

Me1

String[] Me1

Class cramer2.rules.RuleNormalBodyConstituent extends RuleStructuresList implements Serializable

serialVersionUID:

561099393926299574L

Class cramer2.rules.RuleReadilyHydrolysedPO4 extends RuleReadilyHydrolised implements Serializable

serialVersionUID:

0L

Class cramer2.rules.RuleUnchargedOrganophosphates extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

0L

Package eye

Class eye.EyeIrritationRules extends UserDefinedTree implements Serializable

serialVersionUID:

0L

Serialized Fields

residuesIDVisible

boolean residuesIDVisible

interactive

boolean interactive

Package eye.categories

Class eye.categories.CategoryCorrosiveEye extends ToxicCategory implements Serializable

serialVersionUID:

0L

Class eye.categories.CategoryCorrosiveSkin extends ToxicCategory implements Serializable

serialVersionUID:

6615095900322210095L

Class eye.categories.CategoryModerateIrritation2Eye extends ToxicCategory implements Serializable

serialVersionUID:

-8257756176661704738L

Class eye.categories.CategoryNotCorrosive2Eye extends NonToxicCategory implements Serializable

serialVersionUID:

-6047887306931102413L

Class eye.categories.CategoryNotCorrosive2Skin extends NonToxicCategory implements Serializable

serialVersionUID:

0L

Class eye.categories.CategoryNotCorrosive2SkinAndIrritating2Eye extends NonToxicCategory implements Serializable

serialVersionUID:

4559681534893046652L

Class eye.categories.CategoryNotCorrosive2SkinEye extends NonToxicCategory implements Serializable

serialVersionUID:

-6047887306931102413L

Class eye.categories.CategoryNotCorrosive2SkinOrIrritating2Eye extends NonToxicCategory implements Serializable

serialVersionUID:

6871881193252662338L

Class eye.categories.CategoryNotIrritating2Eye extends NonToxicCategory implements Serializable

serialVersionUID:

-2478375025406169883L

Class eye.categories.CategoryNotIrritatingOrCorrosive2Eye extends NonToxicCategory implements Serializable

serialVersionUID:

5628846896673746712L

Class eye.categories.CategoryUnknown extends DefaultCategory implements Serializable

serialVersionUID:

-3578629943501329146L

Package eye.rules

Class eye.rules.Rule1 extends RuleMeltingPoint implements Serializable

serialVersionUID:

-8649383128811407758L

Class eye.rules.Rule13_AliphaticMonoalcohols extends AbstractRule implements Serializable

serialVersionUID:

-93444610429767862L

Serialized Fields

smartsPattern

ambit2.smarts.query.SmartsPatternCDK smartsPattern

Class eye.rules.Rule14Aliphatic_glycerol_monoethers extends RuleSMARTSubstructureCDK implements Serializable

serialVersionUID:

0L

Class eye.rules.Rule15 extends RuleSMARTSubstructureCDK implements Serializable

serialVersionUID:

9104503071300748951L

Class eye.rules.Rule16 extends RuleSMARTSubstructureCDK implements Serializable

serialVersionUID:

6619307428513761997L

Class eye.rules.Rule17 extends RuleSMARTSubstructureCDK implements Serializable

serialVersionUID:

7350155371387383600L

Class eye.rules.Rule18 extends RuleSMARTSubstructureCDK implements Serializable

serialVersionUID:

-1030146366743047422L

Class eye.rules.Rule19 extends RuleSMARTSubstructureCDK implements Serializable

serialVersionUID:

4615399415007083583L

Class eye.rules.Rule20 extends RuleSMARTSubstructureCDK implements Serializable

serialVersionUID:

783691118834275500L

Class eye.rules.Rule21 extends RuleSMARTSubstructureCDK implements Serializable

serialVersionUID:

-3597287604060552686L

Class eye.rules.Rule22 extends RuleSMARTSubstructure implements Serializable

serialVersionUID:

4554821516348794326L

Class eye.rules.Rule23 extends RuleSMARTSubstructureCDK implements Serializable

serialVersionUID:

6832236568300428556L

Class eye.rules.Rule24 extends RuleSMARTSubstructureCDK implements Serializable

serialVersionUID:

5694629047963940604L

Class eye.rules.Rule25 extends RuleSMARTSubstructureCDK implements Serializable

serialVersionUID:

-7467138428398345475L

Class eye.rules.Rule26 extends RuleSMARTSubstructureCDK implements Serializable

serialVersionUID:

7046271360905421880L

Class eye.rules.Rule27 extends RuleSMARTSubstructureCDK implements Serializable

serialVersionUID:

-2060891977483904587L

Class eye.rules.Rule28 extends RuleSMARTSubstructureCDK implements Serializable

serialVersionUID:

-8607025658661359589L

Class eye.rules.Rule29 extends RuleSMARTSubstructureCDK implements Serializable

serialVersionUID:

7808619208415829555L

Class eye.rules.Rule30 extends Rule13_AliphaticMonoalcohols implements Serializable

serialVersionUID:

5991105366142502190L

Class eye.rules.Rule31 extends RuleSMARTSubstructureCDK implements Serializable

serialVersionUID:

800576945800512954L

Class eye.rules.Rule32 extends RuleSMARTSubstructureCDK implements Serializable

serialVersionUID:

8002849623956810859L

Class eye.rules.Rule33 extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

-437751597303663215L

Class eye.rules.Rule34 extends RuleSMARTSubstructureCDK implements Serializable

serialVersionUID:

-6563533686492835370L

Class eye.rules.Rule35 extends RuleSMARTSubstructureCDK implements Serializable

serialVersionUID:

1584909571294850146L

Class eye.rules.Rule36 extends RuleSMARTSubstructureCDK implements Serializable

serialVersionUID:

-6609334742089655488L

Class eye.rules.Rule37 extends RuleSMARTSubstructureCDK implements Serializable

serialVersionUID:

2025514044404501953L

Class eye.rules.Rule38 extends Rule13_AliphaticMonoalcohols implements Serializable

serialVersionUID:

1883795218031485202L

Class eye.rules.Rule39 extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

8111045566810348942L

Class eye.rules.RuleAqueousSolubility extends RuleAqueousSolubility implements Serializable

serialVersionUID:

5545033439943037006L

Class eye.rules.RuleAqueousSolubility_10_2 extends RuleAqueousSolubility implements Serializable

serialVersionUID:

-3043729188241089383L

Class eye.rules.RuleAqueousSolubility_10_5 extends RuleAqueousSolubility implements Serializable

serialVersionUID:

-9207094589145106619L

Class eye.rules.RuleAqueousSolubility_11_7 extends RuleAqueousSolubility implements Serializable

serialVersionUID:

-4219315422187754290L

Class eye.rules.RuleAqueousSolubility_8_3 extends RuleAqueousSolubility implements Serializable

serialVersionUID:

5316870328312912112L

Class eye.rules.RuleAqueousSolubility_8_4 extends RuleAqueousSolubility implements Serializable

serialVersionUID:

4585282455276205726L

Class eye.rules.RuleAqueousSolubility_9_3 extends RuleAqueousSolubility implements Serializable

serialVersionUID:

0L

Class eye.rules.RuleAqueousSolubility1 extends RuleAqueousSolubility implements Serializable

serialVersionUID:

9071883269025129927L

Class eye.rules.RuleHasOnlyC_H_O extends RuleHasOnlyC_H_O implements Serializable

serialVersionUID:

0L

Class eye.rules.RuleHasOnlyC_H_O_Halogen extends RuleHasOnlyC_H_O_Halogen implements Serializable

serialVersionUID:

2906031080259727925L

Class eye.rules.RuleHasOnlyC_H_O_N extends RuleHasOnlyC_H_O_N implements Serializable

serialVersionUID:

4344824489980098936L

Class eye.rules.RuleHasOnlyC_H_O_N_Halogen extends RuleHasOnlyC_H_O_N_Halogen implements Serializable

serialVersionUID:

0L

Class eye.rules.RuleHasOnlyC_H_O_N_S extends RuleHasOnlyC_H_O_N_S implements Serializable

serialVersionUID:

-2712540622945032235L

Class eye.rules.RuleLipidSolubility extends RuleLipidSolubility implements Serializable

serialVersionUID:

8538391835920402168L

Class eye.rules.RuleLipidSolubility_10_4 extends RuleLipidSolubility implements Serializable

serialVersionUID:

0L

Class eye.rules.RuleLipidSolubility_9_1 extends RuleLipidSolubility implements Serializable

serialVersionUID:

-8357984840287595156L

Class eye.rules.RuleLogP extends RuleLogP implements Serializable

serialVersionUID:

-7734658495811755955L

Class eye.rules.RuleLogP_10_1 extends RuleLogP implements Serializable

serialVersionUID:

7707624938651582581L

Class eye.rules.RuleLogP_11_4 extends RuleLogP implements Serializable

serialVersionUID:

0L

Class eye.rules.RuleLogP_11_5 extends RuleLogP implements Serializable

serialVersionUID:

-4467205718576125531L

Class eye.rules.RuleLogP_11_6 extends RuleLogP implements Serializable

serialVersionUID:

-5363867593294848441L

Class eye.rules.RuleLogP_12_4 extends RuleLogP implements Serializable

serialVersionUID:

0L

Class eye.rules.RuleLogP_9_4 extends RuleLogP implements Serializable

serialVersionUID:

-3681268707976233188L

Class eye.rules.RuleLogP1 extends RuleLogP implements Serializable

serialVersionUID:

-7325163044887989127L

Class eye.rules.RuleMelting_Point_11_3 extends RuleMeltingPoint implements Serializable

serialVersionUID:

0L

Class eye.rules.RuleMeltingPoint_11_2 extends RuleMeltingPoint implements Serializable

serialVersionUID:

0L

Class eye.rules.RuleMeltingPoint_12_3 extends RuleMeltingPoint implements Serializable

serialVersionUID:

0L

Class eye.rules.RuleMeltingPoint_8_1 extends RuleMeltingPoint implements Serializable

serialVersionUID:

-2248078944626757369L

Class eye.rules.RuleMolWeight extends RuleMolWeight implements Serializable

serialVersionUID:

8191213894327027957L

Class eye.rules.RuleMolWeight_10_3 extends RuleMolWeight implements Serializable

serialVersionUID:

0L

Class eye.rules.RuleMolWeight_11_1 extends RuleMolWeight implements Serializable

serialVersionUID:

0L

Class eye.rules.RuleMolweight_12_1 extends RuleMolWeight implements Serializable

serialVersionUID:

0L

Class eye.rules.RuleMolWeight_12_2 extends RuleMolWeight implements Serializable

serialVersionUID:

-7547724816243868768L

Class eye.rules.RuleMolWeight_8_2 extends RuleMolWeight implements Serializable

serialVersionUID:

-8851329850728194643L

Class eye.rules.RuleMolWeight_9_2 extends RuleMolWeight implements Serializable

serialVersionUID:

0L

Package mic

Class mic.MICRules extends UserDefinedTree implements Serializable

serialVersionUID:

0L

Serialized Fields

residuesIDVisible

boolean residuesIDVisible

Package mic.categories

Class mic.categories.micronucleusClass1 extends ToxicCategory implements Serializable

serialVersionUID:

-3316295137722917583L

Class mic.categories.micronucleusClass2 extends NonToxicCategory implements Serializable

serialVersionUID:

-3316295137722917583L

Package mic.rules

Class mic.rules.MICTreeResult extends TreeResult implements Serializable

serialVersionUID:

-1505391697761215610L

Class mic.rules.PB29 extends StructureAlert implements Serializable

serialVersionUID:

-4522164238365215591L

Class mic.rules.PB30 extends StructureAlert implements Serializable

serialVersionUID:

-4522164238365215591L

Class mic.rules.RuleAlertsForMIC extends RuleInitAlertCounter implements Serializable

serialVersionUID:

7143766029103047956L

Class mic.rules.SA1 extends StructureAlertCDK implements Serializable

serialVersionUID:

8723199576199214305L

Class mic.rules.SA10 extends StructureAlertCDK implements Serializable

serialVersionUID:

610255293661685341L

Class mic.rules.SA11 extends StructureAlertCDK implements Serializable

serialVersionUID:

-248350312392283257L

Class mic.rules.SA12 extends StructureAlert implements Serializable

serialVersionUID:

-134744118620760662L

Class mic.rules.SA13 extends StructureAlertCDK implements Serializable

serialVersionUID:

1L

Class mic.rules.SA14 extends StructureAlert implements Serializable

serialVersionUID:

-4522164238365215591L

Class mic.rules.SA15 extends StructureAlert implements Serializable

serialVersionUID:

-3437130658406764865L

Class mic.rules.SA16 extends StructureAlert implements Serializable

serialVersionUID:

2255928320356164303L

Class mic.rules.SA18 extends RuleAromatic implements Serializable

serialVersionUID:

6108780282064473735L

Serialized Fields

alertsCounter

IAlertCounter alertsCounter

Class mic.rules.SA19 extends SA18 implements Serializable

serialVersionUID:

5024954402467318417L

Class mic.rules.SA2 extends StructureAlertCDK implements Serializable

serialVersionUID:

8584645139767927034L

Serialized Fields

prescreenSulphonic

ambit2.smarts.query.ISmartsPattern<T> prescreenSulphonic

prescreenPhosphonic

ambit2.smarts.query.ISmartsPattern<T> prescreenPhosphonic

Class mic.rules.SA21 extends StructureAlert implements Serializable

serialVersionUID:

-4846012217142617415L

Class mic.rules.SA22 extends StructureAlertCDK implements Serializable

serialVersionUID:

-4104398484154885424L

Class mic.rules.SA23 extends StructureAlertCDK implements Serializable

serialVersionUID:

-3589707922783454840L

Class mic.rules.SA24 extends StructureAlertCDK implements Serializable

serialVersionUID:

-5624687406911731732L

Class mic.rules.SA25 extends StructureAlertCDK implements Serializable

serialVersionUID:

-8544406595249296835L

Class mic.rules.SA26 extends RuleAnySubstructure implements Serializable

serialVersionUID:

1180914654531194376L

Serialized Fields

alertsCounter

IAlertCounter alertsCounter

Class mic.rules.SA27 extends StructureAlertCDK implements Serializable

serialVersionUID:

-1315653781295236217L

Serialized Fields

nitro

String[][] nitro

exclusion_rules

Object[][] exclusion_rules

Class mic.rules.SA28 extends StructureAlertCDK implements Serializable

serialVersionUID:

8180236810801295676L

Class mic.rules.SA28bis extends StructureAlertCDK implements Serializable

serialVersionUID:

-3084959606481108406L

Class mic.rules.SA28ter extends StructureAlertCDK implements Serializable

serialVersionUID:

6392891031735444965L

Class mic.rules.SA29 extends StructureAlertCDK implements Serializable

serialVersionUID:

-5061212731819103939L

Class mic.rules.SA3 extends StructureAlert implements Serializable

serialVersionUID:

-3604542364984702836L

Class mic.rules.SA30 extends StructureAlert implements Serializable

serialVersionUID:

-1901197961906586765L

Class mic.rules.SA32 extends StructureAlert implements Serializable

serialVersionUID:

-4522164238365215591L

Class mic.rules.SA33 extends StructureAlert implements Serializable

serialVersionUID:

-4522164238365215591L

Class mic.rules.SA34 extends StructureAlert implements Serializable

serialVersionUID:

-4522164238365215591L

Class mic.rules.SA35 extends StructureAlert implements Serializable

serialVersionUID:

-4522164238365215591L

Class mic.rules.SA36 extends StructureAlert implements Serializable

serialVersionUID:

-4522164238365215591L

Class mic.rules.SA4 extends StructureAlertCDK implements Serializable

serialVersionUID:

5946639009469464169L

Class mic.rules.SA5 extends StructureAlert implements Serializable

serialVersionUID:

-6468810632146505927L

Class mic.rules.SA6 extends StructureAlert implements Serializable

serialVersionUID:

8096353651714543348L

Class mic.rules.SA7 extends StructureAlert implements Serializable

serialVersionUID:

-3847918414478370174L

Class mic.rules.SA8 extends StructureAlert implements Serializable

serialVersionUID:

-3069463173082446510L

Class mic.rules.SA9 extends StructureAlert implements Serializable

serialVersionUID:

5739165398205328879L

Package michaelacceptors

Class michaelacceptors.MATreeResult extends TreeResult implements Serializable

serialVersionUID:

-1467549068891674646L

Class michaelacceptors.MichaelAcceptorRules extends UserDefinedTree implements Serializable

serialVersionUID:

0L

Serialized Fields

residuesIDVisible

boolean residuesIDVisible

Package michaelacceptors.categories

Class michaelacceptors.categories.CategoryMichaelAcceptor extends DefaultCategory implements Serializable

serialVersionUID:

0L

Class michaelacceptors.categories.CategoryUnknown extends DefaultCategory implements Serializable

serialVersionUID:

0L

Package michaelacceptors.rules

Class michaelacceptors.rules.Rule1 extends StructureAlertAmbit implements Serializable

serialVersionUID:

0L

Class michaelacceptors.rules.Rule10A extends StructureAlertAmbit implements Serializable

serialVersionUID:

0L

Class michaelacceptors.rules.Rule10B extends StructureAlertAmbit implements Serializable

serialVersionUID:

0L

Class michaelacceptors.rules.Rule11 extends StructureAlertAmbit implements Serializable

serialVersionUID:

0L

Class michaelacceptors.rules.Rule12A extends StructureAlertAmbit implements Serializable

serialVersionUID:

0L

Class michaelacceptors.rules.Rule12B extends StructureAlertAmbit implements Serializable

serialVersionUID:

0L

Class michaelacceptors.rules.Rule13A extends StructureAlertAmbit implements Serializable

serialVersionUID:

0L

Class michaelacceptors.rules.Rule13B extends StructureAlertAmbit implements Serializable

serialVersionUID:

0L

Class michaelacceptors.rules.Rule14 extends StructureAlertAmbit implements Serializable

serialVersionUID:

0L

Class michaelacceptors.rules.Rule2 extends StructureAlertAmbit implements Serializable

serialVersionUID:

0L

Class michaelacceptors.rules.Rule3 extends StructureAlertAmbit implements Serializable

serialVersionUID:

0L

Class michaelacceptors.rules.Rule4A extends StructureAlertAmbit implements Serializable

serialVersionUID:

0L

Class michaelacceptors.rules.Rule4B extends StructureAlertAmbit implements Serializable

serialVersionUID:

0L

Class michaelacceptors.rules.Rule5 extends StructureAlertAmbit implements Serializable

serialVersionUID:

0L

Class michaelacceptors.rules.Rule6 extends StructureAlertAmbit implements Serializable

serialVersionUID:

0L

Class michaelacceptors.rules.Rule7 extends StructureAlertAmbit implements Serializable

serialVersionUID:

0L

Class michaelacceptors.rules.Rule8 extends StructureAlertAmbit implements Serializable

serialVersionUID:

0L

Class michaelacceptors.rules.Rule9A extends StructureAlertAmbit implements Serializable

serialVersionUID:

0L

Class michaelacceptors.rules.Rule9B extends StructureAlertAmbit implements Serializable

serialVersionUID:

0L

Package mutant

Class mutant.BB_CarcMutRules extends UserDefinedTree implements Serializable

serialVersionUID:

0L

Serialized Fields

residuesIDVisible

boolean residuesIDVisible

Package mutant.categories

Class mutant.categories.CategoryCarcinogen extends MutantCategory implements Serializable

serialVersionUID:

-7529107918115308743L

Class mutant.categories.CategoryError extends MutantCategory implements Serializable

serialVersionUID:

-8788740394316042120L

Class mutant.categories.CategoryMutagenTA100 extends MutantCategory implements Serializable

serialVersionUID:

-6248692451136892104L

Class mutant.categories.CategoryNoGenotoxicAlert extends MutantCategory implements Serializable

serialVersionUID:

1943386186604548606L

Class mutant.categories.CategoryNonMutagen extends MutantCategory implements Serializable

serialVersionUID:

-2260409185436019402L

Class mutant.categories.CategoryNoNongenotoxicAlert extends MutantCategory implements Serializable

serialVersionUID:

1943386186604548606L

Class mutant.categories.CategoryNotCarcinogen extends MutantCategory implements Serializable

serialVersionUID:

-6303680085070012246L

Class mutant.categories.CategoryPositiveAlertGenotoxic extends MutantCategory implements Serializable

serialVersionUID:

1L

Class mutant.categories.CategoryPositiveAlertNongenotoxic extends MutantCategory implements Serializable

serialVersionUID:

8138204808124157951L

Class mutant.categories.MutantCategory extends DefaultCategory implements Serializable

serialVersionUID:

0L

Serialized Fields

priority

int priority

Class mutant.categories.QSARApplicable extends MutantCategory implements Serializable

serialVersionUID:

3498454991194849716L

Package mutant.rules

Class mutant.rules.MutantTreeResult extends TreeResult implements Serializable

serialVersionUID:

-1505391697761215610L

Serialized Fields

descriptors

String[] descriptors

qsar

String[] qsar

Class mutant.rules.QSAR6Applicable extends RuleSMARTSubstructureCDK implements Serializable

serialVersionUID:

1840810866408347284L

Serialized Fields

options

IDecisionInteractive.UserOptions options

listener

PropertyChangeListener listener

Class mutant.rules.RuleABUnsaturatedAldehyde extends RuleSMARTSubstructureCDK implements Serializable

serialVersionUID:

-3648165533151563575L

Class mutant.rules.RuleAlertsForCarcinogenicity extends RuleInitAlertCounter implements Serializable

serialVersionUID:

7143766029103047956L

Class mutant.rules.RuleAlertsForGenotoxicCarcinogenicity extends RuleInitAlertCounter implements Serializable

serialVersionUID:

7143766029103047956L

Class mutant.rules.RuleAlertsNongenotoxicCarcinogenicity extends RuleInitAlertCounter implements Serializable

serialVersionUID:

-7260662529206464920L

Class mutant.rules.RuleAromaticAmineNoSulfonicGroup extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

-3246531093544049211L

Class mutant.rules.RuleAromaticDiazo extends RuleSMARTSubstructureCDK implements Serializable

serialVersionUID:

7210404986049938157L

Class mutant.rules.RuleDACancerogenicityAromaticAmines extends LinearDiscriminantRule implements Serializable

serialVersionUID:

2196148992556022225L

Class mutant.rules.RuleDAMutagenicityABUnsaturatedAldehydes extends LinearDiscriminantRule implements Serializable

serialVersionUID:

-6335418026822816698L

Class mutant.rules.RuleDAMutagenicityAromaticAmines extends LinearDiscriminantRule implements Serializable

serialVersionUID:

-2700747255861380207L

Class mutant.rules.RuleDerivedAromaticAmines extends RuleSMARTSubstructureCDK implements Serializable

serialVersionUID:

5890191226995213346L

Class mutant.rules.SA1_gen extends StructureAlertCDK implements Serializable

serialVersionUID:

8723199576199214305L

Class mutant.rules.SA10_gen extends StructureAlertCDK implements Serializable

serialVersionUID:

610255293661685341L

Class mutant.rules.SA11_gen extends StructureAlertCDK implements Serializable

serialVersionUID:

-248350312392283257L

Class mutant.rules.SA12_gen extends StructureAlert implements Serializable

serialVersionUID:

-134744118620760662L

Class mutant.rules.SA13_gen extends StructureAlertCDK implements Serializable

serialVersionUID:

1L

Class mutant.rules.SA14_gen extends StructureAlert implements Serializable

serialVersionUID:

-4522164238365215591L

Class mutant.rules.SA15_gen extends StructureAlert implements Serializable

serialVersionUID:

-3437130658406764865L

Class mutant.rules.SA16_gen extends StructureAlert implements Serializable

serialVersionUID:

2255928320356164303L

Class mutant.rules.SA17_nogen extends StructureAlertCDK implements Serializable

serialVersionUID:

397119362022175631L

Class mutant.rules.SA18_gen extends RuleAromatic implements Serializable

serialVersionUID:

6108780282064473735L

Serialized Fields

alertsCounter

IAlertCounter alertsCounter

Class mutant.rules.SA19_gen extends SA18_gen implements Serializable

serialVersionUID:

5024954402467318417L

Class mutant.rules.SA2_gen extends StructureAlertCDK implements Serializable

serialVersionUID:

8584645139767927034L

Serialized Fields

prescreenSulphonic

ambit2.smarts.query.ISmartsPattern<T> prescreenSulphonic

prescreenPhosphonic

ambit2.smarts.query.ISmartsPattern<T> prescreenPhosphonic

Class mutant.rules.SA20_nogen extends RuleRingSubstituents implements Serializable

serialVersionUID:

2801459527105693883L

Serialized Fields

ring_halogen_count

int ring_halogen_count

halogen_count

int halogen_count

halogens

String[] halogens

alertsCounter

IAlertCounter alertsCounter

Class mutant.rules.SA21_gen extends StructureAlert implements Serializable

serialVersionUID:

-4846012217142617415L

Class mutant.rules.SA22_gen extends StructureAlertCDK implements Serializable

serialVersionUID:

-4104398484154885424L

Class mutant.rules.SA23_gen extends StructureAlertCDK implements Serializable

serialVersionUID:

-3589707922783454840L

Class mutant.rules.SA24_gen extends StructureAlertCDK implements Serializable

serialVersionUID:

-5624687406911731732L

Class mutant.rules.SA25_gen extends StructureAlertCDK implements Serializable

serialVersionUID:

-8544406595249296835L

Class mutant.rules.SA26_gen extends StructureAlertAmbit implements Serializable

serialVersionUID:

1180914654531194376L

Serialized Fields

alertsCounter

IAlertCounter alertsCounter

Class mutant.rules.SA27_gen extends StructureAlertCDK implements Serializable

serialVersionUID:

-1315653781295236217L

Serialized Fields

nitro

String[][] nitro

exclusion_rules

Object[][] exclusion_rules

Class mutant.rules.SA28_gen extends StructureAlertAmbit implements Serializable

serialVersionUID:

8180236810801295676L

Class mutant.rules.SA28bis_gen extends StructureAlertCDK implements Serializable

serialVersionUID:

-3084959606481108406L

Class mutant.rules.SA28ter_gen extends StructureAlertCDK implements Serializable

serialVersionUID:

6392891031735444965L

Class mutant.rules.SA29_gen extends StructureAlertCDK implements Serializable

serialVersionUID:

-5061212731819103939L

Class mutant.rules.SA3_gen extends StructureAlert implements Serializable

serialVersionUID:

-3604542364984702836L

Class mutant.rules.SA30_gen extends StructureAlert implements Serializable

serialVersionUID:

-1901197961906586765L

Class mutant.rules.SA31a_nogen extends StructureAlertCDK implements Serializable

serialVersionUID:

-2036282670921013258L

Class mutant.rules.SA31b_nogen extends StructureAlert implements Serializable

serialVersionUID:

-8299877660995850022L

Class mutant.rules.SA31c_nogen extends StructureAlert implements Serializable

serialVersionUID:

-1445930404886318331L

Class mutant.rules.SA37_gen extends StructureAlertCDK implements Serializable

serialVersionUID:

8723199576199214305L

Class mutant.rules.SA38_gen extends StructureAlertCDK implements Serializable

serialVersionUID:

8723199576199214305L

Class mutant.rules.SA39_gen_and_nogen extends StructureAlertCDK implements Serializable

serialVersionUID:

8723199576199214305L

Class mutant.rules.SA4_gen extends StructureAlertCDK implements Serializable

serialVersionUID:

5946639009469464169L

Class mutant.rules.SA40_nogen extends StructureAlertCDK implements Serializable

serialVersionUID:

8723199576199214305L

Class mutant.rules.SA41_nogen extends StructureAlertCDK implements Serializable

serialVersionUID:

8723199576199214305L

Class mutant.rules.SA42_nogen extends StructureAlertCDK implements Serializable

serialVersionUID:

8723199576199214305L

Class mutant.rules.SA43_nogen extends StructureAlertCDK implements Serializable

serialVersionUID:

8723199576199214305L

Class mutant.rules.SA44_nogen extends StructureAlertCDK implements Serializable

serialVersionUID:

8723199576199214305L

Class mutant.rules.SA45_nogen extends StructureAlertCDK implements Serializable

serialVersionUID:

8723199576199214305L

Class mutant.rules.SA46_nogen extends StructureAlertCDK implements Serializable

serialVersionUID:

8723199576199214305L

Class mutant.rules.SA47_nogen extends StructureAlertCDK implements Serializable

serialVersionUID:

8723199576199214305L

Class mutant.rules.SA48_nogen extends StructureAlertCDK implements Serializable

serialVersionUID:

8723199576199214305L

Class mutant.rules.SA49_nogen extends StructureAlertCDK implements Serializable

serialVersionUID:

8723199576199214305L

Class mutant.rules.SA5_gen extends StructureAlert implements Serializable

serialVersionUID:

-6468810632146505927L

Class mutant.rules.SA50_nogen extends StructureAlertCDK implements Serializable

serialVersionUID:

8723199576199214305L

Class mutant.rules.SA51_nogen extends StructureAlertCDK implements Serializable

serialVersionUID:

8723199576199214305L

Class mutant.rules.SA52_nogen extends StructureAlertCDK implements Serializable

serialVersionUID:

8723199576199214305L

Class mutant.rules.SA53_nogen extends StructureAlertCDK implements Serializable

serialVersionUID:

8723199576199214305L

Class mutant.rules.SA54_nogen extends StructureAlertCDK implements Serializable

serialVersionUID:

8723199576199214305L

Class mutant.rules.SA55_nogen extends StructureAlertCDK implements Serializable

serialVersionUID:

8723199576199214305L

Class mutant.rules.SA56_nogen extends StructureAlertCDK implements Serializable

serialVersionUID:

8723199576199214305L

Class mutant.rules.SA6_gen extends StructureAlert implements Serializable

serialVersionUID:

8096353651714543348L

Class mutant.rules.SA7_gen extends StructureAlert implements Serializable

serialVersionUID:

-3847918414478370174L

Class mutant.rules.SA8_gen extends StructureAlert implements Serializable

serialVersionUID:

-3069463173082446510L

Class mutant.rules.SA9_gen extends StructureAlert implements Serializable

serialVersionUID:

5739165398205328879L

Class mutant.rules.UserInputABUnsaturatedAldehyde extends UserInputRule implements Serializable

serialVersionUID:

4030450494902430927L

Class mutant.rules.UserInputAromaticAmine extends UserInputRule implements Serializable

serialVersionUID:

-5385938309932274L

Class mutant.rules.VerifyAlertsGenotoxic extends RuleVerifyAlertsCounter implements Serializable

serialVersionUID:

-424872251765946518L

Class mutant.rules.VerifyAlertsNongenotoxic extends RuleVerifyAlertsCounter implements Serializable

serialVersionUID:

-424872251765946518L

Package sicret

Class sicret.SicretRules extends UserDefinedTree implements Serializable

serialVersionUID:

0L

Serialized Fields

residuesIDVisible

boolean residuesIDVisible

interactive

boolean interactive

Package sicret.categories

Class sicret.categories.CategoryCorrosive extends ToxicCategory implements Serializable

serialVersionUID:

0L

Class sicret.categories.CategoryIrritating extends ToxicCategory implements Serializable

serialVersionUID:

0L

Class sicret.categories.CategoryIrritatingOrCorrosive extends ToxicCategory implements Serializable

serialVersionUID:

0L

Class sicret.categories.CategoryNotCorrosive extends NonToxicCategory implements Serializable

serialVersionUID:

0L

Class sicret.categories.CategoryNotIrritating extends NonToxicCategory implements Serializable

serialVersionUID:

0L

Class sicret.categories.CategoryNotIrritatingOrCorrosive extends NonToxicCategory implements Serializable

serialVersionUID:

6262205717485184257L

Class sicret.categories.CategoryUnknown extends DefaultCategory implements Serializable

serialVersionUID:

0L

Package sicret.rules

Class sicret.rules.Rule11 extends RuleLogP implements Serializable

serialVersionUID:

0L

Class sicret.rules.Rule12 extends RuleVapourPressure implements Serializable

serialVersionUID:

0L

Class sicret.rules.Rule13 extends RuleMolWeight implements Serializable

serialVersionUID:

0L

Class sicret.rules.Rule14 extends RuleMeltingPoint implements Serializable

serialVersionUID:

0L

Class sicret.rules.Rule15 extends RuleAqueousSolubility implements Serializable

serialVersionUID:

0L

Class sicret.rules.Rule16 extends RuleLogP implements Serializable

serialVersionUID:

0L

Class sicret.rules.Rule17 extends RuleLogP implements Serializable

serialVersionUID:

0L

Class sicret.rules.Rule18 extends RuleAqueousSolubility implements Serializable

serialVersionUID:

0L

Class sicret.rules.Rule19 extends RuleMolWeight implements Serializable

serialVersionUID:

0L

Class sicret.rules.Rule20 extends RuleLipidSolubility implements Serializable

serialVersionUID:

0L

Class sicret.rules.Rule21 extends RuleMolWeight implements Serializable

serialVersionUID:

0L

Class sicret.rules.Rule22 extends RuleLipidSolubility implements Serializable

serialVersionUID:

0L

Class sicret.rules.Rule23 extends RuleAqueousSolubility implements Serializable

serialVersionUID:

0L

Class sicret.rules.Rule24 extends RuleMolWeight implements Serializable

serialVersionUID:

0L

Class sicret.rules.Rule25 extends RuleMeltingPoint implements Serializable

serialVersionUID:

0L

Class sicret.rules.Rule26 extends RuleSurfaceTension implements Serializable

serialVersionUID:

0L

Class sicret.rules.Rule27 extends RuleMeltingPoint implements Serializable

serialVersionUID:

0L

Class sicret.rules.Rule28 extends RuleLogP implements Serializable

serialVersionUID:

0L

Class sicret.rules.Rule29 extends RuleMolWeight implements Serializable

serialVersionUID:

0L

Class sicret.rules.Rule30 extends RuleMolWeight implements Serializable

serialVersionUID:

0L

Class sicret.rules.Rule4 extends RuleMeltingPoint implements Serializable

serialVersionUID:

0L

Class sicret.rules.Rule8 extends RuleLipidSolubility implements Serializable

serialVersionUID:

0L

Class sicret.rules.Rule9 extends RuleMolWeight implements Serializable

serialVersionUID:

0L

Class sicret.rules.RuleA_Lactams extends RuleSMARTSubstructure implements Serializable

serialVersionUID:

0L

Class sicret.rules.RuleAcidAnhydrides extends RuleAnySubstructure implements Serializable

serialVersionUID:

0L

Class sicret.rules.RuleAcidImides extends RuleSMARTSubstructure implements Serializable

serialVersionUID:

0L

Class sicret.rules.RuleAcrylicAcids extends RuleAllSubstructures implements Serializable

serialVersionUID:

0L

Class sicret.rules.RuleAcrylicAndMethacrylicEsters extends RuleSMARTSubstructure implements Serializable

serialVersionUID:

0L

Class sicret.rules.RuleAldehydes extends RuleSMARTSubstructure implements Serializable

serialVersionUID:

0L

Class sicret.rules.RuleAliphaticSaturatedAcidsAndHalogenatedAcids extends RuleSMARTSubstructure implements Serializable

serialVersionUID:

0L

Class sicret.rules.RuleAlkylAlkanolAmines extends RuleSMARTSubstructure implements Serializable

serialVersionUID:

0L

Class sicret.rules.RuleAlphaAlkynes extends RuleSMARTSubstructure implements Serializable

serialVersionUID:

0L

Class sicret.rules.RuleAlphaHalogenatedAmidesAndThioamides extends RuleSMARTSubstructure implements Serializable

serialVersionUID:

0L

Class sicret.rules.RuleAqueousSolubility extends RuleVerifyProperty implements Serializable

serialVersionUID:

0L

Class sicret.rules.RuleAromaticAmines extends RuleAnySubstructure implements Serializable

serialVersionUID:

0L

Class sicret.rules.RuleBenzylHalides extends RuleSMARTSubstructure implements Serializable

serialVersionUID:

0L

Class sicret.rules.RuleBetaLactones extends RuleSMARTSubstructure implements Serializable

serialVersionUID:

0L

Class sicret.rules.RuleC10_C20AliphaticAlcohols extends RuleAnySubstructure implements Serializable

serialVersionUID:

0L

Class sicret.rules.RuleCarbamoylHalide extends RuleAnySubstructure implements Serializable

serialVersionUID:

-7688128643594557976L

Class sicret.rules.RuleCatecholsResorcinolsHydroquinones extends RuleAnySubstructure implements Serializable

serialVersionUID:

0L

Class sicret.rules.RuleDi_Tri_Nitrobenzenes extends RuleAnySubstructure implements Serializable

serialVersionUID:

727457812604632292L

Class sicret.rules.RuleEpoxides extends RuleSMARTSubstructure implements Serializable

serialVersionUID:

0L

Class sicret.rules.RuleEthyleneGlycolEthers extends RuleSMARTSubstructure implements Serializable

serialVersionUID:

0L

Class sicret.rules.RuleHalogenatedAlkanesAndAlkenes extends RuleSMARTSubstructure implements Serializable

serialVersionUID:

0L

Class sicret.rules.RuleHalonitrobenzene extends RuleAnySubstructure implements Serializable

serialVersionUID:

-5706154117097320404L

Class sicret.rules.RuleHasOnlyC_H_O extends RuleAllAllowedElements implements Serializable

serialVersionUID:

0L

Class sicret.rules.RuleHasOnlyC_H_O_Halogen extends RuleAllAllowedElements implements Serializable

serialVersionUID:

0L

Class sicret.rules.RuleHasOnlyC_H_O_N extends RuleAllAllowedElements implements Serializable

serialVersionUID:

0L

Class sicret.rules.RuleHasOnlyC_H_O_N_Halogen extends RuleAllAllowedElements implements Serializable

serialVersionUID:

0L

Class sicret.rules.RuleHasOnlyC_H_O_N_S extends RuleAllAllowedElements implements Serializable

serialVersionUID:

0L

Class sicret.rules.RuleHydroPeroxides extends RuleSMARTSubstructure implements Serializable

serialVersionUID:

0L

Class sicret.rules.RuleKetenes extends RuleSMARTSubstructure implements Serializable

serialVersionUID:

0L

Class sicret.rules.RuleKetones extends RuleSMARTSubstructure implements Serializable

serialVersionUID:

0L

Class sicret.rules.RuleLactonesFusedOrUnsaturated extends RuleAnySubstructure implements Serializable

serialVersionUID:

4333357476318163143L

Class sicret.rules.RuleLipidSolubility extends RuleVerifyProperty implements Serializable

serialVersionUID:

0L

Class sicret.rules.RuleLogP extends RuleVerifyProperty implements Serializable

serialVersionUID:

-7734658495811755955L

Class sicret.rules.RuleMeltingPoint extends RuleVerifyProperty implements Serializable

serialVersionUID:

0L

Class sicret.rules.RuleMolWeight extends RuleVerifyProperty implements Serializable

serialVersionUID:

0L

Class sicret.rules.RuleOandPQuinones extends RuleAnySubstructure implements Serializable

serialVersionUID:

0L

Class sicret.rules.RulePhenols extends RuleSMARTSubstructureCDK implements Serializable

serialVersionUID:

0L

Class sicret.rules.RuleQuaternaryOrganicAmmoniumAndPhosphoniumSalts extends RuleAnySubstructure implements Serializable

serialVersionUID:

0L

Serialized Fields

rule

RuleSMARTSubstructure rule

Class sicret.rules.RuleSurfaceTension extends RuleVerifyProperty implements Serializable

serialVersionUID:

8012546663800600074L

Class sicret.rules.RuleTriAndTetraHalogenatedBenzenes extends RuleAnySubstructure implements Serializable

serialVersionUID:

6305090403794888363L

Class sicret.rules.RuleVapourPressure extends RuleVerifyProperty implements Serializable

serialVersionUID:

6656157974877531909L

Package structurefeatures.rules

Class structurefeatures.rules.RuleAlcohol extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

0L

Class structurefeatures.rules.RuleAldehyde extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

0L

Class structurefeatures.rules.RuleAlkylAldehyde extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

0L

Class structurefeatures.rules.RuleAlkylHydrazine extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

0L

Class structurefeatures.rules.RuleAlkylPhosphonate extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

0L

Class structurefeatures.rules.RuleAmine extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

0L

Class structurefeatures.rules.RuleAromaticAldehyde extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

0L

Class structurefeatures.rules.RuleAromaticAzo extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

0L

Class structurefeatures.rules.RuleAromaticNitro extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

0L

Class structurefeatures.rules.RuleArylMethylHalide extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

0L

Class structurefeatures.rules.RuleAziridine extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

0L

Class structurefeatures.rules.RuleAzo extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

0L

Class structurefeatures.rules.RuleBenzene extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

-2365998863316858613L

Class structurefeatures.rules.RuleEpoxide extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

0L

Class structurefeatures.rules.RuleEther extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

0L

Class structurefeatures.rules.RuleFuran extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

0L

Class structurefeatures.rules.RuleHalide extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

0L

Class structurefeatures.rules.RuleHeterocycle extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

0L

Class structurefeatures.rules.RuleHydrazine extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

0L

Class structurefeatures.rules.RuleIminomethyl extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

0L

Class structurefeatures.rules.RuleKetone extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

0L

Class structurefeatures.rules.RuleNChloramine extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

0L

Class structurefeatures.rules.RuleNHydroxy extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

0L

Class structurefeatures.rules.RuleNitro extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

0L

Class structurefeatures.rules.RuleNitrogenMustard extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

0L

Class structurefeatures.rules.RuleNitrosamine extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

0L

Class structurefeatures.rules.RuleNitroso extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

0L

Class structurefeatures.rules.RuleNMethylol extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

0L

Class structurefeatures.rules.RuleNOxide extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

0L

Class structurefeatures.rules.RuleNucleosides extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

0L

Class structurefeatures.rules.RulePhosphoricGroups extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

0L

Class structurefeatures.rules.RuleprimaryAlkylHalide extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

0L

Class structurefeatures.rules.RulePropiolactone extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

0L

Class structurefeatures.rules.RuleUrethaneDerivatives extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

0L

Package toxTree.apps.toxForest

Class toxTree.apps.toxForest.ToxForestActions extends ActionList implements Serializable

serialVersionUID:

1507146195264700129L

Class toxTree.apps.toxForest.ToxForestCompoundPanel extends CompoundPanel implements Serializable

serialVersionUID:

-4086442883999695442L

Class toxTree.apps.toxForest.ToxForestDataModule extends DecisionMethodsDataModule implements Serializable

serialVersionUID:

6517247854283253903L

Serialized Fields

actions

ToxForestActions actions

estimateAction

EstimateAction estimateAction

Class toxTree.apps.toxForest.ToxForestDataModulePanel extends DataModulePanel implements Serializable

serialVersionUID:

-514823907951014642L

Serialized Fields

table

JTable table

editAction

EditDecisionMethodAction editAction

Package toxTree.core

Class toxTree.core.SmartElementsList extends TreeSet<String> implements Serializable

serialVersionUID:

8123152913411974522L

Serialized Fields

halogens

TreeSet<E> halogens

Class toxTree.core.ToxTreePackageEntries extends ArrayList implements Serializable

serialVersionUID:

654366469816332059L

Package toxtree.data

Class toxtree.data.ActionList extends ActionMap implements Serializable

serialVersionUID:

5579378925985803990L

Serialized Fields

no

int no

frame

JFrame frame

Class toxtree.data.DataModule extends Observable implements Serializable

serialVersionUID:

-8605583116332611996L

Serialized Fields

dataContainer

DataContainer dataContainer

useDatabase

int useDatabase

jcpDialog

ambit2.jchempaint.editor.JChemPaintDialog jcpDialog

jcpModel

org.openscience.cdk.interfaces.IChemModel jcpModel

batch

BatchProcessing batch

Class toxtree.data.DecisionMethodsDataModule extends DataModule implements Serializable

serialVersionUID:

-7860257982749840157L

Serialized Fields

methods

IDecisionMethodsList methods

rules

IDecisionMethod rules

treeResult

IDecisionResult treeResult

Class toxtree.data.ToxTreeActions extends ActionList implements Serializable

serialVersionUID:

8971882886147441682L

Serialized Fields

model

ToxTreeModule model

estimateActions

ArrayList<E> estimateActions

fileActions

ArrayList<E> fileActions

helpActions

ArrayList<E> helpActions

estimateAction

Action estimateAction

estimateAllAction

Action estimateAllAction

explainAction

Action explainAction

viewMethodAction

Action viewMethodAction

editMethodAction

Action editMethodAction

editCompoundAction

Action editCompoundAction

batchAction

BatchAction batchAction

Class toxtree.data.ToxTreeModule extends DecisionMethodsDataModule implements Serializable

serialVersionUID:

8292481405980136292L

Serialized Fields

listener

MetabolyteRecycler listener

treeFrame

TreeFrame treeFrame

metabolitesFrame

MetabolitesFrame metabolitesFrame

actions

ToxTreeActions actions

Package toxTree.data

Class toxTree.data.ListOfAtomContainers extends ArrayList<org.openscience.cdk.interfaces.IAtomContainer> implements Serializable

serialVersionUID:

7586214506838048913L

Serialized Fields

id

String id

properties

Map<K,V> properties

Class toxTree.data.MoleculesFile extends org.openscience.cdk.ChemObject implements Serializable

serialVersionUID:

4566523260890189354L

Serialized Fields

smigen

org.openscience.cdk.smiles.SmilesGenerator smigen

fp

org.openscience.cdk.fingerprint.Fingerprinter fp

reader

org.openscience.cdk.io.random.RandomAccessReader reader

updatedProperties

Map<K,V>[] updatedProperties

recordLoaded

org.openscience.cdk.interfaces.IAtomContainer recordLoaded

recordLoadedIndex

int recordLoadedIndex

selectedIndex

int selectedIndex

bufferProperties

boolean bufferProperties

propertyChangeSupport

PropertyChangeSupport propertyChangeSupport

foundIndex

int foundIndex

sortedProperties

SortedPropertyList sortedProperties

Class toxTree.data.SortedPropertyList extends ArrayList<toxTree.data.SortedProperty> implements Serializable

serialVersionUID:

-1993342280071166061L

Serialized Fields

propertyName

Object propertyName

Package toxTree.exceptions

Class toxTree.exceptions.DCategoryUnknown extends DecisionResultException implements Serializable

serialVersionUID:

8582727747962033910L

Class toxTree.exceptions.DecisionMethodException extends Exception implements Serializable

serialVersionUID:

2295189243363905691L

Class toxTree.exceptions.DecisionMethodIOException extends DecisionMethodException implements Serializable

serialVersionUID:

-1637646011433572163L

Class toxTree.exceptions.DecisionResultException extends Exception implements Serializable

serialVersionUID:

-4787147813217836285L

Class toxTree.exceptions.DecisionResultIOException extends DecisionResultException implements Serializable

serialVersionUID:

-6695199901956521381L

Class toxTree.exceptions.DecisionResultUIDException extends DecisionResultIOException implements Serializable

serialVersionUID:

-453946774551761094L

Class toxTree.exceptions.DesisionMethodUIDException extends DecisionMethodIOException implements Serializable

serialVersionUID:

-5672555875002826883L

Class toxTree.exceptions.DMethodNotAssigned extends DecisionResultException implements Serializable

serialVersionUID:

5762134581706024866L

Class toxTree.exceptions.DRuleException extends DecisionMethodException implements Serializable

serialVersionUID:

-7009633103421299967L

Serialized Fields

category2assign

IDecisionCategory category2assign

answer

boolean answer

Class toxTree.exceptions.DRuleNotImplemented extends DecisionMethodException implements Serializable

serialVersionUID:

9158149761604757898L

Class toxTree.exceptions.DRulePropertyNotAvailable extends DRuleNotImplemented implements Serializable

serialVersionUID:

883553923579355912L

Serialized Fields

propertyName

String propertyName

Class toxTree.exceptions.FilterException extends Exception implements Serializable

serialVersionUID:

-4857410117644646316L

Class toxTree.exceptions.IntrospectionException extends Exception implements Serializable

serialVersionUID:

-5961460143661726433L

Class toxTree.exceptions.MolAnalyseException extends Exception implements Serializable

serialVersionUID:

9169305769013001316L

Serialized Fields

atomContainer

org.openscience.cdk.interfaces.IAtomContainer atomContainer

Class toxTree.exceptions.ReactionException extends Exception implements Serializable

serialVersionUID:

8951733128185940496L

Class toxTree.exceptions.ToxTreeIOException extends Exception implements Serializable

serialVersionUID:

-2465688895150239988L

Serialized Fields

filename

String filename

Class toxTree.exceptions.XMLDecisionMethodException extends DecisionMethodException implements Serializable

serialVersionUID:

4090629078836210269L

Package toxTree.io.batch

Class toxTree.io.batch.BatchProcessing extends Observable implements Serializable

serialVersionUID:

1L

Serialized Fields

saveStateFrequency

int saveStateFrequency

inputFile

FileState inputFile

outputFile

FileState outputFile

dateCreated

Date dateCreated

dateLastSaved

Date dateLastSaved

status

int status

Class toxTree.io.batch.BatchProcessingException extends Exception implements Serializable

serialVersionUID:

6837815972092687580L

Serialized Fields

batch

IBatchProcessing batch

Class toxTree.io.batch.ChemObjectBatchProcessing extends BatchProcessing implements Serializable

serialVersionUID:

-7112745841569991346L

Class toxTree.io.batch.FileState extends Object implements Serializable

serialVersionUID:

-9098389880881547516L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:

IOException

ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:

IOException

Serialized Fields

filename

String filename

length

long length

lastModified

long lastModified

hashCode

int hashCode

offset

long offset

currentRecord

long currentRecord

Class toxTree.io.batch.ToxTreeBatchProcessing extends ChemObjectBatchProcessing implements Serializable

serialVersionUID:

312980948801505772L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:

IOException

ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:

IOException

Serialized Fields

decisionMethodFile

String decisionMethodFile

Package toxtree.plugins.ames

Class toxtree.plugins.ames.AmesMutagenicityRules extends UserDefinedTree implements Serializable

serialVersionUID:

0L

Serialized Fields

residuesIDVisible

boolean residuesIDVisible

Package toxtree.plugins.ames.categories

Class toxtree.plugins.ames.categories.AmesMutagenicityCategory extends DefaultCategory implements Serializable

serialVersionUID:

0L

Serialized Fields

priority

int priority

Class toxtree.plugins.ames.categories.CategoryError extends AmesMutagenicityCategory implements Serializable

serialVersionUID:

6672360935236553890L

Class toxtree.plugins.ames.categories.CategoryMutagenTA100 extends AmesMutagenicityCategory implements Serializable

serialVersionUID:

-6248692451136892104L

Class toxtree.plugins.ames.categories.CategoryNoAlertAmes extends AmesMutagenicityCategory implements Serializable

serialVersionUID:

1943386186604548606L

Class toxtree.plugins.ames.categories.CategoryNonMutagen extends AmesMutagenicityCategory implements Serializable

serialVersionUID:

-2260409185436019402L

Class toxtree.plugins.ames.categories.CategoryPositiveAlertAmes extends AmesMutagenicityCategory implements Serializable

serialVersionUID:

1L

Class toxtree.plugins.ames.categories.QSARApplicable extends AmesMutagenicityCategory implements Serializable

serialVersionUID:

3498454991194849716L

Package toxtree.plugins.ames.rules

Class toxtree.plugins.ames.rules.AmesMutagenicityTreeResult extends TreeResult implements Serializable

serialVersionUID:

-1505391697761215610L

Serialized Fields

descriptors

String[] descriptors

qsar

String[] qsar

Class toxtree.plugins.ames.rules.QSAR6Applicable extends RuleSMARTSubstructureCDK implements Serializable

serialVersionUID:

1840810866408347284L

Serialized Fields

options

IDecisionInteractive.UserOptions options

listener

PropertyChangeListener listener

Class toxtree.plugins.ames.rules.RuleABUnsaturatedAldehyde extends RuleSMARTSubstructureCDK implements Serializable

serialVersionUID:

-3648165533151563575L

Class toxtree.plugins.ames.rules.RuleAlertsAmes extends RuleInitAlertCounter implements Serializable

serialVersionUID:

-7260662529206464920L

Class toxtree.plugins.ames.rules.RuleAlertsForAmesMutagenicity extends RuleInitAlertCounter implements Serializable

serialVersionUID:

7143766029103047956L

Class toxtree.plugins.ames.rules.RuleAlertsForGenotoxicCarcinogenicity extends RuleInitAlertCounter implements Serializable

serialVersionUID:

7143766029103047956L

Class toxtree.plugins.ames.rules.RuleAlertsForNewAmesMutagenicity extends RuleInitAlertCounter implements Serializable

serialVersionUID:

7143766029103047956L

Class toxtree.plugins.ames.rules.RuleAromaticAmineNoSulfonicGroup extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

-3246531093544049211L

Class toxtree.plugins.ames.rules.RuleAromaticDiazo extends RuleSMARTSubstructureCDK implements Serializable

serialVersionUID:

7210404986049938157L

Class toxtree.plugins.ames.rules.RuleDAMutagenicityABUnsaturatedAldehydes extends LinearDiscriminantRule implements Serializable

serialVersionUID:

-6335418026822816698L

Class toxtree.plugins.ames.rules.RuleDAMutagenicityAromaticAmines extends LinearDiscriminantRule implements Serializable

serialVersionUID:

-2700747255861380207L

Class toxtree.plugins.ames.rules.RuleDerivedAromaticAmines extends RuleSMARTSubstructureCDK implements Serializable

serialVersionUID:

5890191226995213346L

Class toxtree.plugins.ames.rules.SA1_gen extends StructureAlertCDK implements Serializable

serialVersionUID:

8723199576199214305L

Class toxtree.plugins.ames.rules.SA10_gen extends StructureAlertCDK implements Serializable

serialVersionUID:

610255293661685341L

Class toxtree.plugins.ames.rules.SA11_gen extends StructureAlertCDK implements Serializable

serialVersionUID:

-248350312392283257L

Class toxtree.plugins.ames.rules.SA12_gen extends StructureAlert implements Serializable

serialVersionUID:

-134744118620760662L

Class toxtree.plugins.ames.rules.SA13_gen extends StructureAlertCDK implements Serializable

serialVersionUID:

1L

Class toxtree.plugins.ames.rules.SA14_gen extends StructureAlert implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.ames.rules.SA15_gen extends StructureAlert implements Serializable

serialVersionUID:

-3437130658406764865L

Class toxtree.plugins.ames.rules.SA16_gen extends StructureAlert implements Serializable

serialVersionUID:

2255928320356164303L

Class toxtree.plugins.ames.rules.SA18_gen extends RuleAromatic implements Serializable

serialVersionUID:

6108780282064473735L

Serialized Fields

alertsCounter

IAlertCounter alertsCounter

Class toxtree.plugins.ames.rules.SA19_gen extends SA18_gen implements Serializable

serialVersionUID:

5024954402467318417L

Class toxtree.plugins.ames.rules.SA2_gen extends StructureAlertCDK implements Serializable

serialVersionUID:

8584645139767927034L

Serialized Fields

prescreenSulphonic

ambit2.smarts.query.ISmartsPattern<T> prescreenSulphonic

prescreenPhosphonic

ambit2.smarts.query.ISmartsPattern<T> prescreenPhosphonic

Class toxtree.plugins.ames.rules.SA21_gen extends StructureAlert implements Serializable

serialVersionUID:

-4846012217142617415L

Class toxtree.plugins.ames.rules.SA22_gen extends StructureAlertCDK implements Serializable

serialVersionUID:

-4104398484154885424L

Class toxtree.plugins.ames.rules.SA23_gen extends StructureAlertCDK implements Serializable

serialVersionUID:

-3589707922783454840L

Class toxtree.plugins.ames.rules.SA24_gen extends StructureAlertCDK implements Serializable

serialVersionUID:

-5624687406911731732L

Class toxtree.plugins.ames.rules.SA25_gen extends StructureAlertCDK implements Serializable

serialVersionUID:

-8544406595249296835L

Class toxtree.plugins.ames.rules.SA26_gen extends StructureAlertAmbit implements Serializable

serialVersionUID:

1180914654531194376L

Serialized Fields

alertsCounter

IAlertCounter alertsCounter

Class toxtree.plugins.ames.rules.SA27_gen extends StructureAlertCDK implements Serializable

serialVersionUID:

-1315653781295236217L

Serialized Fields

nitro

String[][] nitro

exclusion_rules

Object[][] exclusion_rules

Class toxtree.plugins.ames.rules.SA28_gen extends StructureAlertAmbit implements Serializable

serialVersionUID:

8180236810801295676L

Class toxtree.plugins.ames.rules.SA28bis_gen extends StructureAlertCDK implements Serializable

serialVersionUID:

-3084959606481108406L

Class toxtree.plugins.ames.rules.SA28ter_gen extends StructureAlertCDK implements Serializable

serialVersionUID:

6392891031735444965L

Class toxtree.plugins.ames.rules.SA29_gen extends StructureAlertCDK implements Serializable

serialVersionUID:

-5061212731819103939L

Class toxtree.plugins.ames.rules.SA3_gen extends StructureAlert implements Serializable

serialVersionUID:

-3604542364984702836L

Class toxtree.plugins.ames.rules.SA30_gen extends StructureAlert implements Serializable

serialVersionUID:

-1901197961906586765L

Class toxtree.plugins.ames.rules.SA37_gen extends StructureAlertCDK implements Serializable

serialVersionUID:

8723199576199214305L

Class toxtree.plugins.ames.rules.SA38_gen extends StructureAlertCDK implements Serializable

serialVersionUID:

8723199576199214305L

Class toxtree.plugins.ames.rules.SA39_gen_and_nogen extends StructureAlertCDK implements Serializable

serialVersionUID:

8723199576199214305L

Class toxtree.plugins.ames.rules.SA4_gen extends StructureAlertCDK implements Serializable

serialVersionUID:

5946639009469464169L

Class toxtree.plugins.ames.rules.SA5_gen extends StructureAlert implements Serializable

serialVersionUID:

-6468810632146505927L

Class toxtree.plugins.ames.rules.SA57_Ames extends StructureAlertCDK implements Serializable

serialVersionUID:

8723199576199214305L

Class toxtree.plugins.ames.rules.SA58_Ames extends StructureAlertCDK implements Serializable

serialVersionUID:

8723199576199214305L

Class toxtree.plugins.ames.rules.SA59_Ames extends StructureAlertCDK implements Serializable

serialVersionUID:

8723199576199214305L

Class toxtree.plugins.ames.rules.SA6_gen extends StructureAlert implements Serializable

serialVersionUID:

8096353651714543348L

Class toxtree.plugins.ames.rules.SA60_Ames extends StructureAlertCDK implements Serializable

serialVersionUID:

8723199576199214305L

Class toxtree.plugins.ames.rules.SA61_Ames extends StructureAlertCDK implements Serializable

serialVersionUID:

8723199576199214305L

Class toxtree.plugins.ames.rules.SA62_Ames extends StructureAlertCDK implements Serializable

serialVersionUID:

8723199576199214305L

Class toxtree.plugins.ames.rules.SA63_Ames extends StructureAlertCDK implements Serializable

serialVersionUID:

8723199576199214305L

Class toxtree.plugins.ames.rules.SA64_Ames extends StructureAlertCDK implements Serializable

serialVersionUID:

8723199576199214305L

Class toxtree.plugins.ames.rules.SA65_Ames extends StructureAlertCDK implements Serializable

serialVersionUID:

8723199576199214305L

Class toxtree.plugins.ames.rules.SA66_Ames extends StructureAlertCDK implements Serializable

serialVersionUID:

8723199576199214305L

Class toxtree.plugins.ames.rules.SA67_Ames extends StructureAlertCDK implements Serializable

serialVersionUID:

8723199576199214305L

Class toxtree.plugins.ames.rules.SA68_Ames extends StructureAlertCDK implements Serializable

serialVersionUID:

8723199576199214305L

Class toxtree.plugins.ames.rules.SA69_Ames extends StructureAlertCDK implements Serializable

serialVersionUID:

8723199576199214305L

Class toxtree.plugins.ames.rules.SA7_gen extends StructureAlert implements Serializable

serialVersionUID:

-3847918414478370174L

Class toxtree.plugins.ames.rules.SA8_gen extends StructureAlert implements Serializable

serialVersionUID:

-3069463173082446510L

Class toxtree.plugins.ames.rules.SA9_gen extends StructureAlert implements Serializable

serialVersionUID:

5739165398205328879L

Class toxtree.plugins.ames.rules.UserInputABUnsaturatedAldehyde extends UserInputRule implements Serializable

serialVersionUID:

4030450494902430927L

Class toxtree.plugins.ames.rules.UserInputAromaticAmine extends UserInputRule implements Serializable

serialVersionUID:

-5385938309932274L

Class toxtree.plugins.ames.rules.VerifyAlertsAmes extends RuleVerifyAlertsCounter implements Serializable

serialVersionUID:

-424872251765946518L

Class toxtree.plugins.ames.rules.VerifyAlertsGenotoxic extends RuleVerifyAlertsCounter implements Serializable

serialVersionUID:

-424872251765946518L

Class toxtree.plugins.ames.rules.VerifyAlertsNewAmes extends RuleVerifyAlertsCounter implements Serializable

serialVersionUID:

-424872251765946518L

Class toxtree.plugins.ames.rules.VerifyAlertsNongenotoxic extends RuleVerifyAlertsCounter implements Serializable

serialVersionUID:

-424872251765946518L

Package toxtree.plugins.dnabinding

Class toxtree.plugins.dnabinding.DNABindingPlugin extends UserDefinedTree implements Serializable

serialVersionUID:

-8574075125273844906L

Serialized Fields

residuesIDVisible

boolean residuesIDVisible

Package toxtree.plugins.dnabinding.categories

Class toxtree.plugins.dnabinding.categories.AcylTransferAlerts extends DNABindingCategory implements Serializable

serialVersionUID:

3581691833406315298L

Class toxtree.plugins.dnabinding.categories.DNABindingCategory extends DefaultCategory implements Serializable

serialVersionUID:

-4309054614893919949L

Class toxtree.plugins.dnabinding.categories.MichaelAcceptors extends DNABindingCategory implements Serializable

serialVersionUID:

4861205974087430140L

Class toxtree.plugins.dnabinding.categories.NoAlerts extends DNABindingCategory implements Serializable

serialVersionUID:

6055850368701920221L

Class toxtree.plugins.dnabinding.categories.ShiffBaseAlerts extends DNABindingCategory implements Serializable

serialVersionUID:

6055850368701920221L

Class toxtree.plugins.dnabinding.categories.SN1Alerts extends DNABindingCategory implements Serializable

serialVersionUID:

-5734136598332428372L

Class toxtree.plugins.dnabinding.categories.SN2Alerts extends DNABindingCategory implements Serializable

serialVersionUID:

-3176004732905640400L

Package toxtree.plugins.dnabinding.rules

Class toxtree.plugins.dnabinding.rules.AcylTransferRule extends DNABindingRule implements Serializable

serialVersionUID:

-1916992749211312250L

Class toxtree.plugins.dnabinding.rules.DNABindingRule extends StructureAlert implements Serializable

serialVersionUID:

-1658487497286276204L

Serialized Fields

shortName

String shortName

Class toxtree.plugins.dnabinding.rules.DNABindingTreeResult extends TreeResult implements Serializable

serialVersionUID:

-1505391697761215610L

Class toxtree.plugins.dnabinding.rules.MichaelAcceptorRule extends DNABindingRule implements Serializable

serialVersionUID:

6414034762618878368L

Class toxtree.plugins.dnabinding.rules.RuleDNABindingAlerts extends RuleInitAlertCounter implements Serializable

serialVersionUID:

-5388334940521878939L

Class toxtree.plugins.dnabinding.rules.ShiffBaseRule extends DNABindingRule implements Serializable

serialVersionUID:

-6764225423440366695L

Class toxtree.plugins.dnabinding.rules.SN1Rule extends DNABindingRule implements Serializable

serialVersionUID:

-1246232527735694154L

Class toxtree.plugins.dnabinding.rules.SN2Rule extends DNABindingRule implements Serializable

serialVersionUID:

-5150275004398569245L

Class toxtree.plugins.dnabinding.rules.VerifyAlertsDNABinding extends RuleVerifyAlertsCounter implements Serializable

serialVersionUID:

-6848759397201273916L

Package toxtree.plugins.func

Class toxtree.plugins.func.FuncRules extends UserDefinedTree implements Serializable

serialVersionUID:

0L

Serialized Fields

residuesIDVisible

boolean residuesIDVisible

Package toxtree.plugins.func.categories

Class toxtree.plugins.func.categories.FuncCat1 extends DefaultCategory implements Serializable

serialVersionUID:

-3316295137722917583L

Class toxtree.plugins.func.categories.FuncCat2 extends DefaultCategory implements Serializable

serialVersionUID:

-3316295137722917583L

Package toxtree.plugins.func.rules

Class toxtree.plugins.func.rules.FG extends StructureAlert implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG1 extends StructureAlertCDK implements Serializable

serialVersionUID:

8723199576199214305L

Class toxtree.plugins.func.rules.FG10 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG11 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG12 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG13 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG14 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG15 extends FG implements Serializable

serialVersionUID:

-3847918414478370174L

Class toxtree.plugins.func.rules.FG16 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG17 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG18 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG19 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG2 extends FG implements Serializable

serialVersionUID:

8723199576199214305L

Class toxtree.plugins.func.rules.FG20 extends FG implements Serializable

serialVersionUID:

-3847918414478370174L

Class toxtree.plugins.func.rules.FG21 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG22 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG23_1 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG23_2 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG23_3 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG23_4 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG23_5 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG23_6 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG23_7 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG23_8 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG23_LS extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG24_1 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG24_2 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG24_3 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG24_LS extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG25 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG26 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG27 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG28 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG29 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG3_1 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG3_2 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG3_LS extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG30 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG31_1 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG31_2 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG31_3 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG31_4 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG31_5 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG31_6 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG31_7 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG31_8 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG31_9 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG31_LS extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG32 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG33_1 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG33_2 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG33_3 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG33_4 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG33_5 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG33_6 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG33_7 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG33_8 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG33_LS extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG34_1 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG34_2 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG34_LS extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG35_1 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG35_10 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG35_11 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG35_12 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG35_13 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG35_2 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG35_3 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG35_4 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG35_5 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG35_6 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG35_7 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG35_8 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG35_9 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG35_LS extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG36 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG37_1 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG37_2 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG37_3 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG37_4 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG37_LS extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG38 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG39 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG4 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG4_1 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG4_2 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG4_LS extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG40 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG41_1 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG41_2 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG41_3 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG41_4 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG41_5 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG41_LS extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG42 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG43 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG44 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG45 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG46_1 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG46_2 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG46_LS extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG47 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG48_1 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG48_2 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG48_LS extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG49 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG5 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG50_1 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG50_2 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG50_3 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG50_LS extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG51_1 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG51_2 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG51_3 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG51_LS extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG52_1 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG52_2 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG52_3 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG52_LS extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG53_1 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG53_2 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG53_3 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG53_LS extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG54 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG55 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG56 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG57 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG58 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG59 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG6 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG60 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG61 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG62 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG63 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG64 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG65 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG66 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG67 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG68 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG69 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG7 extends FG implements Serializable

serialVersionUID:

-3847918414478370174L

Class toxtree.plugins.func.rules.FG70 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG71 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG72 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG73 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG74_1 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG74_2 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG74_3 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG74_4 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG74_5 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG74_6 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG74_7 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG74_LS extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG75_1 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG75_2 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG75_3 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG75_4 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG75_LS extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG76 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG77 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG78_1 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG78_2 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG78_3 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG78_4 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG78_LS extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG79_1 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG79_2 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG79_3 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG79_4 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG79_LS extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG8 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG80_1 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG80_2 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG80_LS extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG81_1 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG81_2 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG81_3 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG81_4 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG81_LS extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG82_1 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG82_2 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG82_3 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG82_4 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG82_LS extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG83_1 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG83_2 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG83_3 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG83_4 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG83_LS extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG84_1 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG84_2 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG84_LS extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG85 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG86 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG87 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG88 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG89 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG9 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FG90 extends FG implements Serializable

serialVersionUID:

-4522164238365215591L

Class toxtree.plugins.func.rules.FuncTreeResult extends TreeResult implements Serializable

serialVersionUID:

-1505391697761215610L

Class toxtree.plugins.func.rules.RuleAlertsForFunc extends RuleInitAlertCounter implements Serializable

serialVersionUID:

7143766029103047956L

Package toxtree.plugins.kroes

Class toxtree.plugins.kroes.Kroes1Tree extends UserDefinedTree implements Serializable

serialVersionUID:

5447022636049493819L

Package toxtree.plugins.kroes.categories

Class toxtree.plugins.kroes.categories.NegligibleRisk extends NonToxicCategory implements Serializable

serialVersionUID:

-2469781633875422865L

Class toxtree.plugins.kroes.categories.NotASafetyConcern extends NonToxicCategory implements Serializable

serialVersionUID:

-8551741293575416084L

Class toxtree.plugins.kroes.categories.RequireCompoundSpecificToxicityData extends DefaultCategory implements Serializable

serialVersionUID:

-512609016571333025L

Package toxtree.plugins.kroes.rules

Class toxtree.plugins.kroes.rules.KroesRule10 extends KroesRule8 implements Serializable

serialVersionUID:

-8716961767047489196L

Class toxtree.plugins.kroes.rules.KroesRule11 extends RuleVerifyIntake implements Serializable

serialVersionUID:

-6146027047205787207L

Class toxtree.plugins.kroes.rules.KroesRule12 extends RuleVerifyIntake implements Serializable

serialVersionUID:

-1262200903658375242L

Class toxtree.plugins.kroes.rules.KroesRule2 extends RuleVerifyAlertsCounter implements Serializable

serialVersionUID:

-7061116252242308444L

Class toxtree.plugins.kroes.rules.KroesRule3 extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

-6122710066223986724L

Class toxtree.plugins.kroes.rules.KroesRule4 extends RuleVerifyIntake implements Serializable

serialVersionUID:

3075417665758907375L

Class toxtree.plugins.kroes.rules.KroesRule5 extends RuleVerifyIntake implements Serializable

serialVersionUID:

-553860642437002004L

Class toxtree.plugins.kroes.rules.KroesRule6 extends RuleUnchargedOrganophosphates implements Serializable

serialVersionUID:

1776897873563751556L

Class toxtree.plugins.kroes.rules.KroesRule7 extends RuleVerifyIntake implements Serializable

serialVersionUID:

5853268905275906969L

Class toxtree.plugins.kroes.rules.KroesRule8 extends AbstractRule implements Serializable

serialVersionUID:

9074211771162398484L

Serialized Fields

cramerRules

CramerRules cramerRules

cramerResults

CramerTreeResult cramerResults

category

DefaultCategory category

Class toxtree.plugins.kroes.rules.KroesRule9 extends RuleVerifyIntake implements Serializable

serialVersionUID:

9202526263556621253L

Class toxtree.plugins.kroes.rules.RuleKroesFig1Q1 extends RuleSubstructures implements Serializable

serialVersionUID:

1418067922586004229L

Class toxtree.plugins.kroes.rules.RuleVerifyIntake extends RuleVerifyProperty implements Serializable

serialVersionUID:

-1145230849647499084L

Package toxtree.plugins.lewis

Class toxtree.plugins.lewis.LewisTree extends UserDefinedTree implements Serializable

serialVersionUID:

5447022636049493819L

Package toxtree.plugins.lewis.categories

Class toxtree.plugins.lewis.categories.CYP1A2 extends DefaultCategory implements Serializable

serialVersionUID:

-8467125726139684587L

Class toxtree.plugins.lewis.categories.CYP2A extends DefaultCategory implements Serializable

serialVersionUID:

-1028965532682447923L

Class toxtree.plugins.lewis.categories.CYP2B extends DefaultCategory implements Serializable

serialVersionUID:

9091088191814508177L

Class toxtree.plugins.lewis.categories.CYP2C extends DefaultCategory implements Serializable

serialVersionUID:

-1275621044932924807L

Class toxtree.plugins.lewis.categories.CYP2D extends DefaultCategory implements Serializable

serialVersionUID:

-6469184046614812107L

Class toxtree.plugins.lewis.categories.CYP2E extends DefaultCategory implements Serializable

serialVersionUID:

8373035451566762061L

Class toxtree.plugins.lewis.categories.CYP3A4 extends DefaultCategory implements Serializable

serialVersionUID:

-9215508462785147943L

Package toxtree.plugins.lewis.rules

Class toxtree.plugins.lewis.rules.Rule_areadepthratio extends Rule_high_AreaDepthRatio implements Serializable

serialVersionUID:

144450955271921534L

Class toxtree.plugins.lewis.rules.Rule_high_AreaDepthRatio extends RuleDescriptorRange implements Serializable

serialVersionUID:

8576568085110630524L

Class toxtree.plugins.lewis.rules.Rule_high_pKa extends RuleDescriptorRange implements Serializable

serialVersionUID:

6527651750709174697L

Class toxtree.plugins.lewis.rules.Rule_highLogP extends RuleDescriptorRange implements Serializable

serialVersionUID:

-1943709360390046218L

Class toxtree.plugins.lewis.rules.Rule_highVolume extends RuleDescriptorRange implements Serializable

serialVersionUID:

4957022400807558093L

Class toxtree.plugins.lewis.rules.Rule_lowVolume extends RuleDescriptorRange implements Serializable

serialVersionUID:

-7013842756507774971L

Class toxtree.plugins.lewis.rules.Rule_volume extends Rule_highVolume implements Serializable

serialVersionUID:

4957022400807558093L

Package toxtree.plugins.moa

Class toxtree.plugins.moa.MOARules extends UserDefinedTree implements Serializable

serialVersionUID:

7898289602233747585L

Package toxtree.plugins.moa.categories

Class toxtree.plugins.moa.categories.CategoryAcetylcholinesteraseInhibitors extends ToxicCategory implements Serializable

serialVersionUID:

-3646890258248793491L

Class toxtree.plugins.moa.categories.CategoryCentralNervousSystemSeizureAgents extends ToxicCategory implements Serializable

serialVersionUID:

-3646890258248793491L

Class toxtree.plugins.moa.categories.CategoryElectrophileProelectrophileReactivity extends ToxicCategory implements Serializable

serialVersionUID:

7972618970441866189L

Class toxtree.plugins.moa.categories.CategoryNarcosis1 extends ToxicCategory implements Serializable

serialVersionUID:

1965751817452223027L

Class toxtree.plugins.moa.categories.CategoryNarcosis2 extends ToxicCategory implements Serializable

serialVersionUID:

-7764742529820310703L

Class toxtree.plugins.moa.categories.CategoryNarcosis3 extends ToxicCategory implements Serializable

serialVersionUID:

4762614097371378412L

Class toxtree.plugins.moa.categories.CategoryOxidativePhosphorylationUncouplers extends ToxicCategory implements Serializable

serialVersionUID:

1960597169224055722L

Class toxtree.plugins.moa.categories.CategoryUnknown extends DefaultCategory implements Serializable

serialVersionUID:

1960597169224055722L

Package toxtree.plugins.moa.rules

Class toxtree.plugins.moa.rules.RuleAlertsAche extends RuleInitAlertCounter implements Serializable

serialVersionUID:

7143766029103047956L

Class toxtree.plugins.moa.rules.RuleAlertsCNS extends RuleInitAlertCounter implements Serializable

serialVersionUID:

7143766029103047956L

Class toxtree.plugins.moa.rules.RuleAlertsNarcosis1_1_1 extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

7143766029103047956L

Serialized Fields

smarts

Object[][] smarts

Class toxtree.plugins.moa.rules.RuleAlertsNarcosis1_1_1_1 extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

-2841543622296627838L

Serialized Fields

smarts

Object[][] smarts

Class toxtree.plugins.moa.rules.RuleAlertsNarcosis1_1_2_1 extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

8928684416446264772L

Serialized Fields

smarts

Object[][] smarts

Class toxtree.plugins.moa.rules.RuleAlertsNarcosis1_1_2_3 extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

-8982040350213666581L

Class toxtree.plugins.moa.rules.RuleAlertsNarcosis2_2_1 extends RuleInitAlertCounter implements Serializable

serialVersionUID:

7143766029103047956L

Class toxtree.plugins.moa.rules.RuleAlertsNarcosis3 extends RuleInitAlertCounter implements Serializable

serialVersionUID:

7143766029103047956L

Class toxtree.plugins.moa.rules.RuleAlertsReactive extends RuleInitAlertCounter implements Serializable

serialVersionUID:

7143766029103047956L

Class toxtree.plugins.moa.rules.RuleAlertsUncouplers extends RuleInitAlertCounter implements Serializable

serialVersionUID:

7143766029103047956L

Class toxtree.plugins.moa.rules.VerifyAlertsAche extends RuleVerifyAlertsCounter implements Serializable

serialVersionUID:

-424872251765946518L

Class toxtree.plugins.moa.rules.VerifyAlertsCNS extends RuleVerifyAlertsCounter implements Serializable

serialVersionUID:

-424872251765946518L

Class toxtree.plugins.moa.rules.VerifyAlertsNarcosis1 extends RuleVerifyAlertsCounter implements Serializable

serialVersionUID:

-424872251765946518L

Class toxtree.plugins.moa.rules.VerifyAlertsNarcosis2 extends RuleVerifyAlertsCounter implements Serializable

serialVersionUID:

-424872251765946518L

Class toxtree.plugins.moa.rules.VerifyAlertsNarcosis3 extends RuleVerifyAlertsCounter implements Serializable

serialVersionUID:

-424872251765946518L

Class toxtree.plugins.moa.rules.VerifyAlertsReactive extends RuleVerifyAlertsCounter implements Serializable

serialVersionUID:

-424872251765946518L

Class toxtree.plugins.moa.rules.VerifyAlertsUncouplers extends RuleVerifyAlertsCounter implements Serializable

serialVersionUID:

-424872251765946518L

Package toxtree.plugins.proteinbinding

Class toxtree.plugins.proteinbinding.ProteinBindingPlugin extends UserDefinedTree implements Serializable

serialVersionUID:

-8574075125273844906L

Serialized Fields

residuesIDVisible

boolean residuesIDVisible

Package toxtree.plugins.proteinbinding.categories

Class toxtree.plugins.proteinbinding.categories.AcylTransferAlerts extends ProteinBindingCategory implements Serializable

serialVersionUID:

3581691833406315298L

Class toxtree.plugins.proteinbinding.categories.MichaelAcceptors extends ProteinBindingCategory implements Serializable

serialVersionUID:

4861205974087430140L

Class toxtree.plugins.proteinbinding.categories.NoAlerts extends ProteinBindingCategory implements Serializable

serialVersionUID:

6055850368701920221L

Class toxtree.plugins.proteinbinding.categories.ProteinBindingCategory extends DefaultCategory implements Serializable

serialVersionUID:

-4309054614893919949L

Class toxtree.plugins.proteinbinding.categories.ShiffBaseAlerts extends ProteinBindingCategory implements Serializable

serialVersionUID:

6055850368701920221L

Class toxtree.plugins.proteinbinding.categories.SN2Alerts extends ProteinBindingCategory implements Serializable

serialVersionUID:

-3176004732905640400L

Class toxtree.plugins.proteinbinding.categories.SNArAlerts extends ProteinBindingCategory implements Serializable

serialVersionUID:

-5734136598332428372L

Package toxtree.plugins.proteinbinding.rules

Class toxtree.plugins.proteinbinding.rules.AcylTransferRule extends ProteinBindingRule implements Serializable

serialVersionUID:

-1916992749211312250L

Class toxtree.plugins.proteinbinding.rules.MichaelAcceptorRule extends ProteinBindingRule implements Serializable

serialVersionUID:

6414034762618878368L

Class toxtree.plugins.proteinbinding.rules.ProteinBindingRule extends StructureAlert implements Serializable

serialVersionUID:

-1658487497286276204L

Serialized Fields

shortName

String shortName

Class toxtree.plugins.proteinbinding.rules.ProteinBindingTreeResult extends TreeResult implements Serializable

serialVersionUID:

-1505391697761215610L

Class toxtree.plugins.proteinbinding.rules.RuleProteinBindingAlerts extends RuleInitAlertCounter implements Serializable

serialVersionUID:

-5388334940521878939L

Class toxtree.plugins.proteinbinding.rules.ShiffBaseRule extends ProteinBindingRule implements Serializable

serialVersionUID:

-6764225423440366695L

Class toxtree.plugins.proteinbinding.rules.SN2Rule extends ProteinBindingRule implements Serializable

serialVersionUID:

-5150275004398569245L

Class toxtree.plugins.proteinbinding.rules.SNARRule extends ProteinBindingRule implements Serializable

serialVersionUID:

-1246232527735694154L

Class toxtree.plugins.proteinbinding.rules.VerifyAlertsProteinBinding extends RuleVerifyAlertsCounter implements Serializable

serialVersionUID:

-6848759397201273916L

Package toxtree.plugins.search

Class toxtree.plugins.search.CompoundLookup extends UserDefinedTree implements Serializable

serialVersionUID:

2673316974202532787L

Package toxtree.plugins.search.categories

Class toxtree.plugins.search.categories.Found extends DefaultCategory implements Serializable

serialVersionUID:

-8773253240824666710L

Class toxtree.plugins.search.categories.NotFound extends DefaultCategory implements Serializable

serialVersionUID:

-2707684567534384412L

Package toxtree.plugins.search.rules

Class toxtree.plugins.search.rules.Find extends AbstractRule implements Serializable

serialVersionUID:

-6192036039649653201L

Serialized Fields

searchSite

ambit2.base.processors.search.AbstractFinder.SITE searchSite

mode

ambit2.base.processors.search.AbstractFinder.MODE mode

profile

ambit2.base.data.Template profile

Package toxtree.plugins.skinsensitisation

Class toxtree.plugins.skinsensitisation.SkinSensitisationPlugin extends UserDefinedTree implements Serializable

serialVersionUID:

-8574075125273844906L

Serialized Fields

residuesIDVisible

boolean residuesIDVisible

Package toxtree.plugins.skinsensitisation.categories

Class toxtree.plugins.skinsensitisation.categories.AcylTransferAlerts extends SkinSensitisationCategory implements Serializable

serialVersionUID:

3581691833406315298L

Class toxtree.plugins.skinsensitisation.categories.MichaelAcceptors extends SkinSensitisationCategory implements Serializable

serialVersionUID:

4861205974087430140L

Class toxtree.plugins.skinsensitisation.categories.NoAlerts extends SkinSensitisationCategory implements Serializable

serialVersionUID:

6055850368701920221L

Class toxtree.plugins.skinsensitisation.categories.ShiffBaseAlerts extends SkinSensitisationCategory implements Serializable

serialVersionUID:

6055850368701920221L

Class toxtree.plugins.skinsensitisation.categories.SkinSensitisationCategory extends DefaultCategory implements Serializable

serialVersionUID:

-4309054614893919949L

Class toxtree.plugins.skinsensitisation.categories.SN2Alerts extends SkinSensitisationCategory implements Serializable

serialVersionUID:

-3176004732905640400L

Class toxtree.plugins.skinsensitisation.categories.SNArAlerts extends SkinSensitisationCategory implements Serializable

serialVersionUID:

-5734136598332428372L

Package toxtree.plugins.skinsensitisation.rules

Class toxtree.plugins.skinsensitisation.rules.AcylTransferRule extends SkinSensitisationRule implements Serializable

serialVersionUID:

-1916992749211312250L

Class toxtree.plugins.skinsensitisation.rules.MichaelAcceptorRule extends SkinSensitisationRule implements Serializable

serialVersionUID:

6414034762618878368L

Class toxtree.plugins.skinsensitisation.rules.RuleSkinSensitisationAlerts extends RuleInitAlertCounter implements Serializable

serialVersionUID:

-5388334940521878939L

Class toxtree.plugins.skinsensitisation.rules.ShiffBaseRule extends SkinSensitisationRule implements Serializable

serialVersionUID:

-6764225423440366695L

Class toxtree.plugins.skinsensitisation.rules.SkinSensitisationRule extends StructureAlert implements Serializable

serialVersionUID:

-1658487497286276204L

Serialized Fields

shortName

String shortName

Class toxtree.plugins.skinsensitisation.rules.SkinSensitisationTreeResult extends TreeResult implements Serializable

serialVersionUID:

-1505391697761215610L

Class toxtree.plugins.skinsensitisation.rules.SN2Rule extends SkinSensitisationRule implements Serializable

serialVersionUID:

-5150275004398569245L

Class toxtree.plugins.skinsensitisation.rules.SNARRule extends SkinSensitisationRule implements Serializable

serialVersionUID:

-1246232527735694154L

Class toxtree.plugins.skinsensitisation.rules.VerifyAlertsSkinSensitisation extends RuleVerifyAlertsCounter implements Serializable

serialVersionUID:

-6848759397201273916L

Package toxtree.plugins.smartcyp

Class toxtree.plugins.smartcyp.SMARTCYPPlugin extends UserDefinedTree implements Serializable

serialVersionUID:

0L

Serialized Fields

residuesIDVisible

boolean residuesIDVisible

Class toxtree.plugins.smartcyp.SMARTCypTreeResult extends TreeResult implements Serializable

serialVersionUID:

2708973197593705185L

Serialized Fields

scp

dk.smartcyp.core.MoleculeKU.SMARTCYP_PROPERTY[] scp

Package toxtree.plugins.smartcyp.categories

Class toxtree.plugins.smartcyp.categories.NoSites extends DefaultCategory implements Serializable

serialVersionUID:

1866885340195239907L

Class toxtree.plugins.smartcyp.categories.SitesHigherRank extends DefaultCategory implements Serializable

serialVersionUID:

1866885340195239907L

Class toxtree.plugins.smartcyp.categories.SitesRank1 extends DefaultCategory implements Serializable

serialVersionUID:

-8169535167365480219L

Class toxtree.plugins.smartcyp.categories.SitesRank2 extends DefaultCategory implements Serializable

serialVersionUID:

6219341311785787592L

Class toxtree.plugins.smartcyp.categories.SitesRank3 extends DefaultCategory implements Serializable

serialVersionUID:

4437712178229753247L

Package toxtree.plugins.smartcyp.rules

Class toxtree.plugins.smartcyp.rules.MetaboliteGenerator extends AbstractRule implements Serializable

serialVersionUID:

-3202810538351239202L

Serialized Fields

rank

int rank

Class toxtree.plugins.smartcyp.rules.SMARTCYPRuleHigherRank extends SMARTCYPRuleRank1 implements Serializable

serialVersionUID:

2711634544165374724L

Class toxtree.plugins.smartcyp.rules.SMARTCYPRuleRank1 extends MetaboliteGenerator implements Serializable

serialVersionUID:

-8348454708993409448L

Class toxtree.plugins.smartcyp.rules.SMARTCYPRuleRank2 extends SMARTCYPRuleRank1 implements Serializable

serialVersionUID:

2711634544165374724L

Class toxtree.plugins.smartcyp.rules.SMARTCYPRuleRank3 extends SMARTCYPRuleRank1 implements Serializable

serialVersionUID:

4648368720045003944L

Package toxtree.plugins.verhaar2

Class toxtree.plugins.verhaar2.VerhaarScheme2 extends VerhaarScheme implements Serializable

serialVersionUID:

8432896817503373854L

Package toxtree.plugins.verhaar2.rules

Class toxtree.plugins.verhaar2.rules.Verhaar2TreeResult extends TreeResult implements Serializable

serialVersionUID:

2222797084633419611L

Package toxTree.qsar

Class toxTree.qsar.AbstractQSARModel extends Object implements Serializable

serialVersionUID:

6827691400266986699L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:

IOException

ClassNotFoundException

Serialized Fields

descriptorNames

List<E> descriptorNames

flag_calculated

Hashtable<K,V> flag_calculated

descriptorsClass

List<E> descriptorsClass

predictedproperty

String predictedproperty

object

Object object

name

String name

Class toxTree.qsar.LinearDiscriminantRule extends AbstractRule implements Serializable

serialVersionUID:

4543098733633840805L

Serialized Fields

model

LinearQSARModel model

threshold

double threshold

Class toxTree.qsar.LinearPreprocessor extends Object implements Serializable

serialVersionUID:

-8354221117667838300L

Serialized Fields

scale

double[] scale

translation

double[] translation

explanation

String explanation

dimension

int dimension

Class toxTree.qsar.LinearQSARModel extends AbstractQSARModel implements Serializable

serialVersionUID:

-2519667129342556469L

Serialized Fields

preprocessor

IDescriptorPreprocessor preprocessor

weights

double[] weights

Class toxTree.qsar.MatrixPreprocessor extends Object implements Serializable

serialVersionUID:

3014828295822399358L

Serialized Fields

matrix

double[][] matrix

explanation

String explanation

dimension

int dimension

Class toxTree.qsar.QSARDescriptor extends Object implements Serializable

serialVersionUID:

-3702178459249696653L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:

IOException

ClassNotFoundException

Serialized Fields

descriptorName

String descriptorName

calculated

boolean calculated

descriptorClass

String descriptorClass

Package toxTree.query

Class toxTree.query.MyAssociationBond extends org.openscience.cdk.Association implements Serializable

serialVersionUID:

-8560854906118304413L

Class toxTree.query.QueryAtomContainers extends ListOfAtomContainers implements Serializable

serialVersionUID:

3659124291428478506L

Class toxTree.query.TopologyAnyBond extends org.openscience.cdk.Bond implements Serializable

serialVersionUID:

-557613393294271482L

Serialized Fields

inRing

boolean inRing

Package toxtree.tree

Class toxtree.tree.Reactor extends net.idea.modbcum.p.DefaultAmbitProcessor<org.openscience.cdk.interfaces.IAtomContainer,org.openscience.cdk.interfaces.IAtomContainerSet> implements Serializable

serialVersionUID:

-4413944157455777834L

Serialized Fields

reactions

ambit2.smarts.SMIRKSReaction[] reactions

smirks

String[][] smirks

Package toxTree.tree

Class toxTree.tree.AbstractRule extends Observable implements Serializable

serialVersionUID:

7104944189094581855L

Serialized Fields

title

String title

explanation

StringBuffer explanation

id

String id

no

int no

examples

String[] examples

residueIDHidden

boolean residueIDHidden

editable

boolean editable

Class toxTree.tree.AbstractRuleHilightHits extends AbstractRule implements Serializable

serialVersionUID:

-6028214376570266393L

Class toxTree.tree.AbstractTree extends Observable implements Serializable

serialVersionUID:

-3786430005546416893L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:

IOException

ClassNotFoundException

Serialized Fields

imageSize

Dimension imageSize

web

boolean web

rules

IDecisionRuleList rules

categories

IDecisionCategories categories

falseIfRuleNotImplemented

boolean falseIfRuleNotImplemented

treeRoot

int treeRoot

name

String name

explanation

String explanation

priority

int priority

Class toxTree.tree.BatchDecisionResultsList extends DecisionResultsList implements Serializable

serialVersionUID:

-4169481833049200104L

Serialized Fields

pssupport

PropertyChangeSupport pssupport

status

ProgressStatus status

notify

boolean notify

imageSize

Dimension imageSize

Class toxTree.tree.CategoriesList extends Observable implements Serializable

serialVersionUID:

1984731709034516593L

Serialized Fields

storage

ArrayList<E> storage

selected

IDecisionCategory selected

multilabel

boolean multilabel

Class toxTree.tree.DecisionMethodsList extends Observable implements Serializable

serialVersionUID:

-3252685260154432751L

Serialized Fields

list

ArrayList<E> list

Class toxTree.tree.DecisionNode extends Observable implements Serializable

serialVersionUID:

592150483005019453L

Serialized Fields

rule

IDecisionRule rule

nodes

DecisionNode[] nodes

categories

IDecisionCategory[] categories

Class toxTree.tree.DecisionNodesFactory extends Object implements Serializable

serialVersionUID:

1633489192067405069L

Serialized Fields

multiLabel

boolean multiLabel

Class toxTree.tree.DecisionNodesList extends Observable implements Serializable

serialVersionUID:

6651725002258477102L

Serialized Fields

list

ArrayList<E> list

Class toxTree.tree.DecisionResultsList extends DecisionMethodsList implements Serializable

serialVersionUID:

-2269460535752336829L

Class toxTree.tree.DefaultCategory extends Observable implements Serializable

serialVersionUID:

8274171691778536402L

Serialized Fields

name

String name

id

int id

explanation

String explanation

threshold

String threshold

selected

boolean selected

Class toxTree.tree.MultiLabelDecisionNode extends DecisionNode implements Serializable

serialVersionUID:

9026738433152349465L

Class toxTree.tree.MultiLabelDecisionNodesList extends DecisionNodesList implements Serializable

serialVersionUID:

-3661035473880245087L

Class toxTree.tree.NonToxicCategory extends DefaultCategory implements Serializable

serialVersionUID:

-1854754496782018338L

Class toxTree.tree.ProgressStatus extends Object implements Serializable

serialVersionUID:

5579521841811010110L

Serialized Fields

estimated

ProgressStatus.STATUS estimated

errMessage

String errMessage

percent

int percent

Class toxTree.tree.RuleResult extends Object implements Serializable

serialVersionUID:

-7844039700306791740L

Serialized Fields

rule

IDecisionRule rule

result

boolean result

category

IDecisionCategory category

silent

boolean silent

web

boolean web

Class toxTree.tree.RulesList extends Observable implements Serializable

serialVersionUID:

-15443828098893778L

Serialized Fields

list

ArrayList<E> list

Class toxTree.tree.ToxicCategory extends DefaultCategory implements Serializable

serialVersionUID:

-6964069453125376570L

Class toxTree.tree.TreeResult extends Object implements Serializable

serialVersionUID:

87786882555929168L

Serialized Fields

decisionMethod

IDecisionMethod decisionMethod

category

IDecisionCategory category

assignedCategories

IDecisionCategories assignedCategories

ruleResults

ArrayList<E> ruleResults

status

ProgressStatus status

notify

boolean notify

web

boolean web

Class toxTree.tree.UserDefinedTree extends AbstractTree implements Serializable

serialVersionUID:

-1399565169354017486L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:

IOException

ClassNotFoundException

Serialized Fields

editable

boolean editable

nodesFactory

IDecisionNodesFactory nodesFactory

options

IDecisionInteractive.UserOptions options

Package toxTree.tree.categories

Class toxTree.tree.categories.DefaultClass1 extends DefaultCategory implements Serializable

serialVersionUID:

2676192163599898441L

Class toxTree.tree.categories.DefaultClass2 extends DefaultCategory implements Serializable

serialVersionUID:

7758442851449606659L

Package toxTree.tree.cramer

Class toxTree.tree.cramer.CramerClass1 extends NonToxicCategory implements Serializable

serialVersionUID:

-3316295137722917583L

Class toxTree.tree.cramer.CramerClass2 extends DefaultCategory implements Serializable

serialVersionUID:

-3590968254184549257L

Class toxTree.tree.cramer.CramerClass3 extends ToxicCategory implements Serializable

serialVersionUID:

-6261392771965489148L

Class toxTree.tree.cramer.CramerRules extends UserDefinedTree implements Serializable

serialVersionUID:

2709354449315583323L

Serialized Fields

residuesIDVisible

boolean residuesIDVisible

Class toxTree.tree.cramer.CramerTreeResult extends TreeResult implements Serializable

serialVersionUID:

-7883635712321700678L

Class toxTree.tree.cramer.Rule32 extends RuleOnlyAllowedSubstructures implements Serializable

serialVersionUID:

2629244201826413885L

Class toxTree.tree.cramer.Rule3FuncGroups extends AbstractRuleHilightHits implements Serializable

serialVersionUID:

300792171250153478L

Class toxTree.tree.cramer.Rule3MemberedHeterocycle extends AbstractRule implements Serializable

serialVersionUID:

7684875450263940055L

Class toxTree.tree.cramer.RuleAcyclicAcetalEsterOfQ30 extends RuleRingComplexSubstituents30 implements Serializable

serialVersionUID:

5048900098470975756L

Class toxTree.tree.cramer.RuleAliphaticWithSomeFuncGroups extends RuleSubstructures implements Serializable

serialVersionUID:

-4236594225792068881L

Class toxTree.tree.cramer.RuleCommonComponentOfFood extends RuleStructuresList implements Serializable

serialVersionUID:

7957714342855801107L

Class toxTree.tree.cramer.RuleCyclopropaneEtc extends RuleRingAllowedSubstituents implements Serializable

serialVersionUID:

-5837604671480301679L

Class toxTree.tree.cramer.RuleHasOnlySaltSulphonateSulphate extends RuleOnlyAllowedSubstructures implements Serializable

serialVersionUID:

3868442005056778784L

Serialized Fields

Me

String[] Me

Me1

String[] Me1

Class toxTree.tree.cramer.RuleHasOtherThanC_H_O_N_S2 extends RuleElements implements Serializable

serialVersionUID:

280559908671875462L

Class toxTree.tree.cramer.RuleHeteroaromatic extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

-4930724854762812531L

Class toxTree.tree.cramer.RuleHeterocyclicComplexSubstituents extends RuleRingOtherThanAllowedSubstituents implements Serializable

serialVersionUID:

954868399687751242L

Class toxTree.tree.cramer.RuleIsAromatic extends RuleAromatic implements Serializable

serialVersionUID:

6162237776922535251L

Class toxTree.tree.cramer.RuleIsCommonTerpene extends RuleCommonTerpene implements Serializable

serialVersionUID:

-2383248619028879671L

Class toxTree.tree.cramer.RuleIsHeterocyclic extends RuleHeterocyclic implements Serializable

serialVersionUID:

6440664854987866385L

Class toxTree.tree.cramer.RuleIsOpenChain extends RuleOpenChain implements Serializable

serialVersionUID:

1697237934140549609L

Class toxTree.tree.cramer.RuleKetoneAlcoholEtc extends AbstractRule implements Serializable

serialVersionUID:

-7970454685982033314L

Class toxTree.tree.cramer.RuleLactoneOrCyclicDiester extends RuleSubstructures implements Serializable

serialVersionUID:

-6435882912202895280L

Serialized Fields

index_lactone

int index_lactone

Class toxTree.tree.cramer.RuleLactonesFusedOrUnsaturated extends RuleAnySubstructure implements Serializable

serialVersionUID:

7838501504594198746L

Class toxTree.tree.cramer.RuleManyAromaticRings14 extends RuleManyAromaticRings implements Serializable

serialVersionUID:

-1822379213370365189L

Class toxTree.tree.cramer.RuleManyAromaticRings28 extends RuleManyAromaticRings implements Serializable

serialVersionUID:

2045207740586587284L

Class toxTree.tree.cramer.RuleMonocarbocyclic extends RuleRingAllowedSubstituents implements Serializable

serialVersionUID:

-625423309210659129L

Class toxTree.tree.cramer.RuleMonocycloalkanoneEtc extends RuleOnlyAllowedSubstructures implements Serializable

serialVersionUID:

4450352445667633895L

Class toxTree.tree.cramer.RuleNormalBodyConstituent extends RuleStructuresList implements Serializable

serialVersionUID:

561099393926299574L

Class toxTree.tree.cramer.RuleOnlyFuncGroupsQ30 extends RuleRingSubstituents implements Serializable

serialVersionUID:

-3457260128790459206L

Serialized Fields

index_polyoxyethylene

int index_polyoxyethylene

Class toxTree.tree.cramer.RuleReadilyHydrolysed29 extends RuleReadilyHydrolysedMononuclear implements Serializable

serialVersionUID:

4499063717714245662L

Class toxTree.tree.cramer.RuleReadilyHydrolysedMononuclear extends RuleReadilyHydrolised implements Serializable

serialVersionUID:

-4332600573329605106L

Class toxTree.tree.cramer.RuleReadilyHydrolysedToCommonterpene extends RuleReadilyHydrolised implements Serializable

serialVersionUID:

6559369329324069745L

Class toxTree.tree.cramer.RuleRingComplexSubstituents30 extends RuleRingOtherThanAllowedSubstituents implements Serializable

serialVersionUID:

-8727429477067911673L

Class toxTree.tree.cramer.RuleRingsWithSubstituents extends RuleAnySubstituents implements Serializable

serialVersionUID:

-7684427072750973831L

Class toxTree.tree.cramer.RuleRingWithSubstituents extends RuleAnySubstituents implements Serializable

serialVersionUID:

-6912178267650991989L

Class toxTree.tree.cramer.RuleSimplyBranchedAliphaticHydrocarbon extends RuleCarbohydrate implements Serializable

serialVersionUID:

-4822713429051030194L

Class toxTree.tree.cramer.RuleSomeBenzeneDerivatives extends RuleRingAllowedSubstituents implements Serializable

serialVersionUID:

7287247707766324579L

Serialized Fields

index_hydroxy1

int index_hydroxy1

index_hydroxy

int index_hydroxy

index_ester

int index_ester

index_alkoxy

int index_alkoxy

index_hydrocarbon

int index_hydrocarbon

chIDs

ArrayList<E> chIDs

hydroxyIDs

ArrayList<E> hydroxyIDs

alkoxyIDs

ArrayList<E> alkoxyIDs

places

int[] places

Class toxTree.tree.cramer.RuleSufficientSulphonateGroups extends AbstractRule implements Serializable

serialVersionUID:

2597352809512599833L

Class toxTree.tree.cramer.RuleToxicFunctionalGroups extends AbstractRuleHilightHits implements Serializable

serialVersionUID:

351259209047271614L

Package toxtree.tree.cramer3

Class toxtree.tree.cramer3.CDTResult extends TreeResult implements Serializable

serialVersionUID:

-7883635712321700678L

Class toxtree.tree.cramer3.CramerClass1 extends NonToxicCategory implements Serializable

serialVersionUID:

-3316295137722917583L

Class toxtree.tree.cramer3.CramerClass2 extends DefaultCategory implements Serializable

serialVersionUID:

-3590968254184549257L

Class toxtree.tree.cramer3.CramerClass3 extends ToxicCategory implements Serializable

serialVersionUID:

-6261392771965489148L

Class toxtree.tree.cramer3.RevisedCramerDecisionTree extends UserDefinedTree implements Serializable

serialVersionUID:

3817869410935325980L

Serialized Fields

residuesIDVisible

boolean residuesIDVisible

Package toxtree.tree.cramer3.rules

Class toxtree.tree.cramer3.rules.RuleLactone extends RuleSMARTSSubstructureHydrolysis implements Serializable

serialVersionUID:

4887225841264312163L

Serialized Fields

tag_ring

String tag_ring

Class toxtree.tree.cramer3.rules.RuleQ1 extends RuleSMARTSSubstructureHydrolysis implements Serializable

serialVersionUID:

2378697331944455708L

Class toxtree.tree.cramer3.rules.RuleQ10 extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

3388789328508499765L

Class toxtree.tree.cramer3.rules.RuleQ11 extends RuleRingsSMARTSSubstituents implements Serializable

serialVersionUID:

2553043397388260375L

Class toxtree.tree.cramer3.rules.RuleQ12 extends RuleHeteroaromatic implements Serializable

serialVersionUID:

-496061857340122792L

Class toxtree.tree.cramer3.rules.RuleQ13 extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

4864479154301899816L

Class toxtree.tree.cramer3.rules.RuleQ14_A extends RuleRingsSMARTSSubstituents implements Serializable

serialVersionUID:

-6371498019860995444L

Class toxtree.tree.cramer3.rules.RuleQ14_B extends RuleRingsSMARTSSubstituents implements Serializable

serialVersionUID:

-5956724793035095684L

Serialized Fields

only_incombination_withothertags

String[] only_incombination_withothertags

Class toxtree.tree.cramer3.rules.RuleQ15 extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

-4143603875842869910L

Class toxtree.tree.cramer3.rules.RuleQ16 extends RuleSMARTSSubstructureTagged implements Serializable

serialVersionUID:

8965415169616600433L

Class toxtree.tree.cramer3.rules.RuleQ17 extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

1100391840872017540L

Class toxtree.tree.cramer3.rules.RuleQ18_AI extends RuleSMARTSSubstructureTagged implements Serializable

serialVersionUID:

-422190692814677580L

Class toxtree.tree.cramer3.rules.RuleQ18_JM extends RuleSMARTSSubstructureTagged implements Serializable

serialVersionUID:

-4636737246727317637L

Serialized Fields

uniqueGroups

Hashtable<K,V> uniqueGroups

Class toxtree.tree.cramer3.rules.RuleQ19 extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

1654949865628751459L

Class toxtree.tree.cramer3.rules.RuleQ2 extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

-5440009983989446835L

Serialized Fields

lookupSMILES

Set<E> lookupSMILES

processor

ambit2.core.processors.structure.InchiProcessor processor

aminoacids

String[][] aminoacids

Class toxtree.tree.cramer3.rules.RuleQ20 extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

-223324583799066539L

Class toxtree.tree.cramer3.rules.RuleQ21 extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

1869334946181755606L

Class toxtree.tree.cramer3.rules.RuleQ22 extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

-278158450767829118L

Class toxtree.tree.cramer3.rules.RuleQ23 extends RuleRingsWithSubstituents implements Serializable

serialVersionUID:

3773448229447591483L

Class toxtree.tree.cramer3.rules.RuleQ24 extends RuleManyAromaticRings28 implements Serializable

serialVersionUID:

3633543942406976277L

Class toxtree.tree.cramer3.rules.RuleQ25 extends RuleRingsSMARTSSubstituents implements Serializable

serialVersionUID:

4261398581406881430L

Class toxtree.tree.cramer3.rules.RuleQ26 extends RuleRingsSMARTSSubstituents implements Serializable

serialVersionUID:

7957054526252029184L

Class toxtree.tree.cramer3.rules.RuleQ27 extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

-8782068444656608886L

Class toxtree.tree.cramer3.rules.RuleQ28 extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

5306667312045783704L

Class toxtree.tree.cramer3.rules.RuleQ29 extends RuleSMARTSSubstructureHydrolysis implements Serializable

serialVersionUID:

2073608343639731210L

Class toxtree.tree.cramer3.rules.RuleQ3 extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

-2805321618642492895L

Serialized Fields

nheterocycle

ambit2.smarts.query.ISmartsPattern<T> nheterocycle

Class toxtree.tree.cramer3.rules.RuleQ4 extends RuleSMARTSSubstructureTagged implements Serializable

serialVersionUID:

-3818857360140289187L

Class toxtree.tree.cramer3.rules.RuleQ4A extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

7747302914787228995L

Class toxtree.tree.cramer3.rules.RuleQ5 extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

154980850401771648L

Serialized Fields

neutraliser

ambit2.smarts.processors.SMIRKSProcessor neutraliser

Class toxtree.tree.cramer3.rules.RuleQ6 extends RuleSMARTSSubstructureTagged implements Serializable

serialVersionUID:

-8381134067452027516L

Serialized Fields

carbohydrate

RuleCarbohydrate carbohydrate

Is the substance a simply branched

• (I) acyclic hydrocarbon containing alkane and/or alkene moieties (but not alkyne moieties),
• (II) a monocyclic or terpene bicyclic, or
• (III) a simple carbohydrate?

Class toxtree.tree.cramer3.rules.RuleQ7 extends RuleHeterocyclic implements Serializable

serialVersionUID:

509908336476064151L

Class toxtree.tree.cramer3.rules.RuleQ8 extends RuleSMARTSSubstructureHydrolysis implements Serializable

serialVersionUID:

-6748804084637824083L

Class toxtree.tree.cramer3.rules.RuleQ9_A extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

-3032619226793652566L

Class toxtree.tree.cramer3.rules.RuleQ9_B extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

5095588195576163493L

Class toxtree.tree.cramer3.rules.RuleQ9_C extends RuleLactone implements Serializable

serialVersionUID:

6336001392204412897L

Class toxtree.tree.cramer3.rules.RuleQ9_D extends RuleLactone implements Serializable

serialVersionUID:

1620850895326811861L

Class toxtree.tree.cramer3.rules.RuleRingsSMARTSSubstituents extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

4341758041049633453L

Class toxtree.tree.cramer3.rules.RuleSMARTSSubstructureHydrolysis extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

8886947918496788577L

Class toxtree.tree.cramer3.rules.RuleSMARTSSubstructureTagged extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

5952223728765270277L

Serialized Fields

tag

String tag

Package toxTree.tree.demo

Class toxTree.tree.demo.SMARTSTree extends UserDefinedTree implements Serializable

serialVersionUID:

-1574710229749897050L

Class toxTree.tree.demo.SubstructureTree extends UserDefinedTree implements Serializable

serialVersionUID:

-4532635398756503555L

Package toxtree.tree.rules

Class toxtree.tree.rules.ApplyRuleOptions extends Object implements Serializable

serialVersionUID:

3494906179654154028L

Package toxTree.tree.rules

Class toxTree.tree.rules.DefaultAlertCounter extends Object implements Serializable

serialVersionUID:

5020613419584585349L

Class toxTree.tree.rules.LookupFile extends Object implements Serializable

serialVersionUID:

-5001289040650439243L

Serialized Fields

file

File file

useCache

boolean useCache

checkAromaticity

boolean checkAromaticity

Class toxTree.tree.rules.RuleAllAllowedElements extends RuleElements implements Serializable

serialVersionUID:

0L

Class toxTree.tree.rules.RuleAllSubstructures extends RuleSubstructures implements Serializable

serialVersionUID:

-3905118154697353083L

Class toxTree.tree.rules.RuleAnySubstituents extends AbstractRule implements Serializable

serialVersionUID:

-1913165069798234598L

Class toxTree.tree.rules.RuleAnySubstructure extends RuleSubstructures implements Serializable

serialVersionUID:

7357138717839597543L

Class toxTree.tree.rules.RuleAromatic extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

1159424698300767741L

Class toxTree.tree.rules.RuleCarbohydrate extends RuleSubstructures implements Serializable

serialVersionUID:

-3126510203326706185L

Serialized Fields

index_alcohol

int index_alcohol

index_ether

int index_ether

index_aldehyde

int index_aldehyde

index_ketone

int index_ketone

idsCyclic

ArrayList<E> idsCyclic

idsAcyclic

ArrayList<E> idsAcyclic

Class toxTree.tree.rules.RuleCommonTerpene extends AbstractRuleHilightHits implements Serializable

serialVersionUID:

6594005948854719886L

Class toxTree.tree.rules.RuleDescriptor extends AbstractRule implements Serializable

serialVersionUID:

-1869386647652135625L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

Throws:

IOException

ClassNotFoundException

writeObject

private void writeObject(ObjectOutputStream out)
                  throws IOException

Throws:

IOException

Serialized Fields

descriptorClass

String descriptorClass

Class toxTree.tree.rules.RuleDescriptorRange extends RuleDescriptor implements Serializable

serialVersionUID:

5767622970686754198L

Serialized Fields

minValue

double minValue

maxValue

double maxValue

Class toxTree.tree.rules.RuleElements extends AbstractRule implements Serializable

serialVersionUID:

6678188211661773753L

Serialized Fields

elements

SmartElementsList elements

mode

int mode

Class toxTree.tree.rules.RuleHeterocyclic extends AbstractRule implements Serializable

serialVersionUID:

7434986483364829784L

Class toxTree.tree.rules.RuleInitAlertCounter extends RuleVerifyProperty implements Serializable

serialVersionUID:

6991889446709051896L

Class toxTree.tree.rules.RuleLipinski5 extends RuleDescriptor implements Serializable

serialVersionUID:

-2049662136403540371L

Serialized Fields

params

Object[] params

Class toxTree.tree.rules.RuleManyAromaticRings extends AbstractRule implements Serializable

serialVersionUID:

8793386207062962918L

Serialized Fields

minValue

double minValue

maxValue

double maxValue

Class toxTree.tree.rules.RuleMolecularMassRange extends RuleDescriptorRange implements Serializable

serialVersionUID:

301601043868779452L

Class toxTree.tree.rules.RuleOnlyAllowedSubstructures extends RuleSubstructures implements Serializable

serialVersionUID:

6539211872840115455L

Class toxTree.tree.rules.RuleOpenChain extends AbstractRule implements Serializable

serialVersionUID:

-6401742853134220208L

Class toxTree.tree.rules.RuleReadilyHydrolised extends AbstractRuleHilightHits implements Serializable

serialVersionUID:

-4332600573329605106L

Class toxTree.tree.rules.RuleRingAllowedSubstituents extends RuleRingSubstituents implements Serializable

serialVersionUID:

-7904081573533596701L

Class toxTree.tree.rules.RuleRingOtherThanAllowedSubstituents extends RuleRingSubstituents implements Serializable

serialVersionUID:

8494351305392210977L

Class toxTree.tree.rules.RuleRings extends RuleSubstructures implements Serializable

serialVersionUID:

5753973449345355629L

Class toxTree.tree.rules.RuleRingSubstituents extends RuleRings implements Serializable

serialVersionUID:

8095271692686086087L

Serialized Fields

analyzeOnlyRingsWithFlagSet

boolean analyzeOnlyRingsWithFlagSet

flagValue

short flagValue

flag_heterocyclyc

boolean flag_heterocyclyc

Class toxTree.tree.rules.RuleStructuresList extends AbstractRule implements Serializable

serialVersionUID:

1445819316236082148L

Serialization Methods

readObject

private void readObject(ObjectInputStream in)
                 throws IOException,
                        ClassNotFoundException

public synchronized boolean isUsingCache() { return lookupFile.isUseCache(); } public synchronized void setUsingCache(boolean useCache) { lookupFile.setUseCache(useCache); } /*

Throws:

IOException

ClassNotFoundException

Serialized Fields

filename

String filename

Class toxTree.tree.rules.RuleSubstructures extends AbstractRuleHilightHits implements Serializable

serialVersionUID:

-2500957952948758410L

Serialized Fields

ids

ArrayList<E> ids

Class toxTree.tree.rules.RuleVerifyAlertsCounter extends RuleInitAlertCounter implements Serializable

serialVersionUID:

-3620796942772067195L

Class toxTree.tree.rules.RuleVerifyProperty extends AbstractRule implements Serializable

serialVersionUID:

2634387005293933539L

Serialized Fields

propertyStaticValue

Double propertyStaticValue

propertyName

String propertyName

propertyUnits

String propertyUnits

options

IDecisionInteractive.UserOptions options

condition

String condition

propertyExamples

double[] propertyExamples

listener

PropertyChangeListener listener

Class toxTree.tree.rules.StructureAlert extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

8723199576199214305L

Serialized Fields

alertsCounter

IAlertCounter alertsCounter

Class toxTree.tree.rules.StructureAlertAmbit extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

-5283264004521118487L

Serialized Fields

alertsCounter

IAlertCounter alertsCounter

Class toxTree.tree.rules.StructureAlertCDK extends RuleSMARTSubstructureCDK implements Serializable

serialVersionUID:

-5283264004521118487L

Serialized Fields

alertsCounter

IAlertCounter alertsCounter

Class toxTree.tree.rules.UserInputRule extends AbstractRule implements Serializable

serialVersionUID:

533087115478484038L

Serialized Fields

message

String message

options

IDecisionInteractive.UserOptions options

listener

PropertyChangeListener listener

Package toxTree.tree.rules.smarts

Class toxTree.tree.rules.smarts.AbstractRuleSmartSubstructure extends AbstractRule implements Serializable

serialVersionUID:

-3546551840533459896L

Serialized Fields

smartsPatterns

Map<K,V> smartsPatterns

containsAllSubstructures

boolean containsAllSubstructures

Class toxTree.tree.rules.smarts.RuleSMARTSSubstructureAmbit extends AbstractRuleSmartSubstructure<org.openscience.cdk.interfaces.IAtomContainer> implements Serializable

serialVersionUID:

4541044864575270095L

Class toxTree.tree.rules.smarts.RuleSMARTSubstructure extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

-6735837340081767333L

Class toxTree.tree.rules.smarts.RuleSMARTSubstructureCDK extends AbstractRuleSmartSubstructure<org.openscience.cdk.interfaces.IAtomContainer> implements Serializable

serialVersionUID:

3210450290267138768L

Package toxtree.ui

Class toxtree.ui.DataModulePanel extends JPanel implements Serializable

serialVersionUID:

-7992562763847145598L

Serialized Fields

dataModule

DataModule dataModule

Class toxtree.ui.HashtableModel extends AbstractTableModel implements Serializable

serialVersionUID:

7658905911850280047L

Serialized Fields

columnNames

String[] columnNames

table

Map<K,V> table

keys

ArrayList<E> keys

enabled

boolean[] enabled

includeTranslated

boolean includeTranslated

Class toxtree.ui.HazardPanel extends DataModulePanel<ToxTreeModule> implements Serializable

serialVersionUID:

8769660495123570173L

Serialized Fields

editAction

Action editAction

methodLabel

JLabel methodLabel

gridBag

GridBagLayout gridBag

estimateButton

JButton estimateButton

explainOption

JCheckBox explainOption

explainArea

JEditorPane explainArea

tBorder

TitledBorder tBorder

cPanel

CategoriesPanel cPanel

metabolites

JLabel metabolites

Class toxtree.ui.OptionsPanel extends JPanel implements Serializable

serialVersionUID:

8261591244903486566L

Serialized Fields

dontAsk

JCheckBox dontAsk

propertyField

JFormattedTextField propertyField

atomContainer

org.openscience.cdk.interfaces.IAtomContainer atomContainer

rule

RuleVerifyProperty rule

Class toxtree.ui.PropertyEditor extends JPanel implements Serializable

serialVersionUID:

5076428184639882491L

Serialized Fields

optionsPanel

OptionsPanel optionsPanel

Class toxtree.ui.PropertyInput extends Object implements Serializable

serialVersionUID:

-6774904746111990006L

Class toxtree.ui.StatusBar extends JPanel implements Serializable

serialVersionUID:

4316933074189008374L

Serialized Fields

toxData

DataContainer toxData

label

JLabel label

progressBar

JProgressBar progressBar

modelProcessing

boolean modelProcessing

dataProcessing

boolean dataProcessing

Package toxtree.ui.actions

Class toxtree.ui.actions.AboutAction extends DataModuleAction implements Serializable

serialVersionUID:

-5008831961271497399L

Serialized Fields

packageName

String packageName

Class toxtree.ui.actions.BatchAction extends DataModuleAction implements Serializable

serialVersionUID:

-552838223008338517L

Class toxtree.ui.actions.ClearResultAction extends DataModuleAction implements Serializable

serialVersionUID:

5761451917137448393L

Class toxtree.ui.actions.DataContainerAction extends AbstractAction implements Serializable

serialVersionUID:

-2019944992083474942L

Serialized Fields

dataContainer

DataContainer dataContainer

Class toxtree.ui.actions.DataModuleAction extends AbstractAction implements Serializable

serialVersionUID:

932720779234702367L

Serialized Fields

module

DataModule module

frame

Component frame

Class toxtree.ui.actions.EditCompoundAction extends DataModuleAction implements Serializable

serialVersionUID:

-3693844769875949599L

Class toxtree.ui.actions.EstimateAction extends DataModuleAction implements Serializable

serialVersionUID:

-3493585373906087441L

Class toxtree.ui.actions.EstimateAllAction extends DataModuleAction implements Serializable

serialVersionUID:

-908827820384368085L

Class toxtree.ui.actions.ExplainAction extends DataModuleAction implements Serializable

serialVersionUID:

4415835055107224951L

Class toxtree.ui.actions.HelpAction extends AbstractAction implements Serializable

serialVersionUID:

-8781252848699546773L

Class toxtree.ui.actions.InfoAction extends DataModuleAction implements Serializable

serialVersionUID:

5062923445126819919L

Class toxtree.ui.actions.NewMoleculeAction extends DataContainerAction implements Serializable

serialVersionUID:

1751471309451329195L

Class toxtree.ui.actions.OpenFileAction extends DataModuleAction implements Serializable

serialVersionUID:

-3383975975928183069L

Class toxtree.ui.actions.QuitAction extends DataModuleAction implements Serializable

serialVersionUID:

607922353225947542L

Class toxtree.ui.actions.SaveFileAction extends DataModuleAction implements Serializable

serialVersionUID:

-6068359897306217218L

Serialized Fields

ext

String[] ext

ext_description

String[] ext_description

Package toxtree.ui.batch

Class toxtree.ui.batch.AbstractJobProcessingDialog extends JDialog implements Serializable

serialVersionUID:

-5641683445720590852L

Serialized Fields

cancelButton

JButton cancelButton

okButton

JButton okButton

pauseButton

JButton pauseButton

pausePressed

boolean pausePressed

okPressed

boolean okPressed

cancelPressed

boolean cancelPressed

result

int result

buttonPane

JPanel buttonPane

mainPanel

JPanel mainPanel

Class toxtree.ui.batch.BatchProcessingDialog extends AbstractJobProcessingDialog implements Serializable

serialVersionUID:

3314347684369161157L

Serialized Fields

batchTitle

JLabel batchTitle

inputField

JFormattedTextField inputField

outputField

JFormattedTextField outputField

b1

JButton b1

b2

JButton b2

openFile

File openFile

saveFile

File saveFile

stateLabel

JLabel stateLabel

progressLabel

JLabel progressLabel

loadBatch

JLabel loadBatch

saveBatch

JLabel saveBatch

configLabel

JLabel configLabel

progressBar

JProgressBar progressBar

batch

IBatchProcessing batch

decisionMethod

IDecisionMethod decisionMethod

Package toxtree.ui.metabolites

Class toxtree.ui.metabolites.MetabolitesFrame extends JFrame implements Serializable

serialVersionUID:

-6393108313154870081L

Serialized Fields

metabolitesPanel

MetabolitesPanel metabolitesPanel

Class toxtree.ui.metabolites.MetabolitesPanel extends JPanel implements Serializable

serialVersionUID:

113354666505922858L

Serialized Fields

products

org.openscience.cdk.interfaces.IAtomContainerSet products

help

JTextPane help

Package toxtree.ui.molecule

Class toxtree.ui.molecule.AbstractMoleculeAction extends AbstractAction implements Serializable

serialVersionUID:

-5270491315560823241L

Serialized Fields

molecule

org.openscience.cdk.interfaces.IAtomContainer molecule

Class toxtree.ui.molecule.AtomContainerPropertyTableModel extends AbstractTableModel implements Serializable

serialVersionUID:

-2692032007126882924L

Serialized Fields

ac

org.openscience.cdk.interfaces.IAtomContainer ac

names

List<E> names

columnNames

String[] columnNames

Class toxtree.ui.molecule.ClearFilteredSubsetsAction extends DataModuleAction implements Serializable

serialVersionUID:

-8665214187795337299L

Class toxtree.ui.molecule.GoToRecordAction extends DataModuleAction implements Serializable

serialVersionUID:

4508406135625635445L

Class toxtree.ui.molecule.LookupCompoundAction extends DataModuleAction implements Serializable

serialVersionUID:

-5916869751317470014L

Serialized Fields

selectedItem

String selectedItem

Class toxtree.ui.molecule.MoleculeEditAction extends ambit2.jchempaint.editor.AbstractMoleculeAction implements Serializable

serialVersionUID:

5166718649430988452L

Serialized Fields

molecules

org.openscience.cdk.interfaces.IAtomContainerSet molecules

jcpModel

org.openscience.cdk.interfaces.IChemModel jcpModel

sdg

org.openscience.cdk.layout.StructureDiagramGenerator sdg

parentComponent

Component parentComponent

jcpDialog

ambit2.jchempaint.editor.JChemPaintDialog jcpDialog

modal

boolean modal

Class toxtree.ui.molecule.NavigationPanel extends JPanel implements Serializable

serialVersionUID:

-7523783333429225550L

Serialized Fields

dataContainer

DataContainer dataContainer

navStat

JLabel navStat

bgColor

Color bgColor

fColor

Color fColor

Class toxtree.ui.molecule.PropertyPanel extends JPanel implements Serializable

serialVersionUID:

-712606150162538423L

Serialized Fields

tableModel

AtomContainerPropertyTableModel tableModel

Class toxtree.ui.molecule.ShowFilteredFileAction extends DataModuleAction implements Serializable

serialVersionUID:

3721636787386952400L

Class toxtree.ui.molecule.SmilesEntryPanel extends StructureEntryPanel implements Serializable

serialVersionUID:

-8184455436899528629L

Serialized Fields

smilesBox

JComboBox<E> smilesBox

popup

JPopupMenu popup

labels

ResourceBundle labels

sdg

org.openscience.cdk.layout.StructureDiagramGenerator sdg

Class toxtree.ui.molecule.StructureEntryPanel extends JPanel implements Serializable

serialVersionUID:

-5806279015355010685L

Serialized Fields

dataContainer

DataContainer dataContainer

Class toxtree.ui.molecule.TopPanel extends JPanel implements Serializable

serialVersionUID:

-8235667744901926748L

Serialized Fields

id

String[] id

smilesPanel

SmilesEntryPanel smilesPanel

filePanel

JPanel filePanel

fileLabel

JLabel fileLabel

Package toxtree.ui.tree

Class toxtree.ui.tree.DecisionMethodsTableModel extends ListTableModel implements Serializable

serialVersionUID:

8738193886962853436L

Serialized Fields

header

String[] header

tooltips

String[] tooltips

Class toxtree.ui.tree.DecisionNodePanel extends JPanel implements Serializable

serialVersionUID:

-7334738022319991601L

Serialized Fields

bgColor

Color bgColor

nodeLabel

JLabel nodeLabel

noBranchLabel

JLabel noBranchLabel

yesBranchLabel

JLabel yesBranchLabel

nodeEdit

JLabel nodeEdit

noBranchEdit

JLabel noBranchEdit

yesBranchEdit

JLabel yesBranchEdit

modifyNode

Action modifyNode

modifyNoBranch

Action modifyNoBranch

modifyYesBranch

Action modifyYesBranch

node

Observable node

noBranch

Observable noBranch

yesBranch

Observable yesBranch

editable

boolean editable

Class toxtree.ui.tree.EditTreeActions extends ActionMap implements Serializable

serialVersionUID:

-8394309004001206767L

Serialized Fields

tree

IDecisionMethod tree

node

DecisionNode node

ruleActions

ActionMap ruleActions

categoryActions

ActionMap categoryActions

treeNodeActions

ActionMap treeNodeActions

treeActions

ActionMap treeActions

Class toxtree.ui.tree.JCustomTreeComponent extends JComponent implements Serializable

serialVersionUID:

6904273473967825167L

Serialized Fields

treeLayout

TreeLayout treeLayout

popup

JPopupMenu popup

Class toxtree.ui.tree.ListPanel extends JPanel implements Serializable

serialVersionUID:

-8765802952299904184L

Serialized Fields

model

ListTableModel<T> model

table

JTable table

listSelectionModel

ListSelectionModel listSelectionModel

selectedObject

Object selectedObject

caption

String caption

Class toxtree.ui.tree.ListTableModel extends AbstractTableModel implements Serializable

serialVersionUID:

-1099894331248616748L

Serialized Fields

list

List<E> list

aClass

Class<T> aClass

Class toxtree.ui.tree.QueryAtomContainersModel extends ListTableModel implements Serializable

serialVersionUID:

3277542698124116055L

Class toxtree.ui.tree.ToxTreeEditorPanel extends JPanel implements Serializable

serialVersionUID:

-763213118243686164L

Serialized Fields

idField

JTextField idField

nameField

JTextField nameField

explanation

JEditorPane explanation

explanationPane

JScrollPane explanationPane

bgColor

Color bgColor

editable

boolean editable

Class toxtree.ui.tree.ToxTreePackageEntryModel extends ListTableModel implements Serializable

serialVersionUID:

2126165671338667947L

Class toxtree.ui.tree.TreeDrawing extends JPanel implements Serializable

serialVersionUID:

-8122365540682052287L

Serialized Fields

rulePanel

RulePanel rulePanel

nodePanel

DecisionNodePanel nodePanel

treeComponent

ITreeView treeComponent

actions

EditTreeActions actions

Class toxtree.ui.tree.TreeEditorPanel extends JPanel implements Serializable

serialVersionUID:

-8216394526738359939L

Serialized Fields

taskPane

com.l2fprod.common.swing.JTaskPane taskPane

rulesPanel

ListPanel rulesPanel

categoriesPanel

ListPanel categoriesPanel

treeComponent

JCustomTreeComponent treeComponent

nodePanel

DecisionNodePanel nodePanel

rulePanel

RulePanel rulePanel

method

IDecisionMethod method

editTreeActions

EditTreeActions editTreeActions

Class toxtree.ui.tree.TreeFrame extends JFrame implements Serializable

serialVersionUID:

6805866718068055323L

Serialized Fields

editable

boolean editable

treePanel

TreeDrawing treePanel

Class toxtree.ui.tree.TreeOptions extends JSplitPane implements Serializable

serialVersionUID:

-4430297393022588312L

Class toxtree.ui.tree.TreePanel extends JPanel implements Serializable

serialVersionUID:

-6284436109070270704L

Serialized Fields

treeModel

DecisionTreeModel treeModel

reference

JTextArea reference

tree

JTree tree

rulePanel

RulePanel rulePanel

nodePanel

DecisionNodePanel nodePanel

Class toxtree.ui.tree.TreePrefuse extends prefuse.Display implements Serializable

serialVersionUID:

4945963443432036734L

Serialized Fields

graph

prefuse.data.Graph graph

tree

IDecisionMethod tree

propertyChangeSupport

PropertyChangeSupport propertyChangeSupport

Package toxtree.ui.tree.actions

Class toxtree.ui.tree.actions.AbstractRuleAction extends AbstractAction implements Serializable

serialVersionUID:

8969299296011499641L

Serialized Fields

rule

IDecisionRule rule

Class toxtree.ui.tree.actions.AbstractTreeAction extends AbstractAction implements Serializable

serialVersionUID:

-7621540375480328244L

Serialized Fields

tree

IDecisionMethod tree

Class toxtree.ui.tree.actions.AddCategoryAction extends AbstractAction implements Serializable

serialVersionUID:

-8925342733654963005L

Serialized Fields

list

List<E> list

Class toxtree.ui.tree.actions.ClearMethodsList extends DataModuleAction implements Serializable

serialVersionUID:

6753371259514111318L

Class toxtree.ui.tree.actions.EditCategoryAction extends AbstractTreeAction implements Serializable

serialVersionUID:

2505268379464961009L

Serialized Fields

category

IDecisionCategory category

Class toxtree.ui.tree.actions.EditDecisionMethodAction extends DataModuleAction implements Serializable

serialVersionUID:

-783463983411442353L

Serialized Fields

editor

IDecisionMethodEditor editor

Class toxtree.ui.tree.actions.EditRuleAction extends AbstractTreeAction implements Serializable

serialVersionUID:

2770657186363871323L

Serialized Fields

rule

IDecisionRule rule

Class toxtree.ui.tree.actions.EditTreeExplanation extends AbstractTreeAction implements Serializable

serialVersionUID:

4136365017401813379L

Class toxtree.ui.tree.actions.LiadMethodsListAction extends DataModuleAction implements Serializable

serialVersionUID:

-795354390405401992L

Class toxtree.ui.tree.actions.LoadAndEditTreeAction extends EditDecisionMethodAction implements Serializable

serialVersionUID:

-8466744301351947086L

Class toxtree.ui.tree.actions.LoadTreeAction extends DataModuleAction implements Serializable

serialVersionUID:

-3106015502941829943L

Class toxtree.ui.tree.actions.NewRuleAction extends AbstractTreeAction implements Serializable

serialVersionUID:

-706728649818509576L

Class toxtree.ui.tree.actions.NewTreeAction extends EditDecisionMethodAction implements Serializable

serialVersionUID:

5669451306467326673L

Class toxtree.ui.tree.actions.SaveMethodsListAction extends DataModuleAction implements Serializable

serialVersionUID:

-8025763574647379327L

Class toxtree.ui.tree.actions.SaveTreeAction extends AbstractTreeAction implements Serializable

serialVersionUID:

-8497168231048381619L

Class toxtree.ui.tree.actions.SelectAndEditTreeAction extends EditDecisionMethodAction implements Serializable

serialVersionUID:

-8584820332812646355L

Serialized Fields

treeActions

ActionMap treeActions

Class toxtree.ui.tree.actions.SelectCategoryFromListAction extends AbstractTreeAction implements Serializable

serialVersionUID:

-1555737259542981434L

Class toxtree.ui.tree.actions.SelectNewTreeAction extends DataModuleAction implements Serializable

serialVersionUID:

5669451306467326673L

Class toxtree.ui.tree.actions.SelectTreeAction extends DataModuleAction implements Serializable

serialVersionUID:

-3751562922607916214L

Class toxtree.ui.tree.actions.SetBranchAction extends AbstractTreeAction implements Serializable

serialVersionUID:

-1690952370004121255L

Serialized Fields

answer

int answer

answerText

String[] answerText

node

DecisionNode node

ruleActions

ActionMap ruleActions

categoryActions

ActionMap categoryActions

Class toxtree.ui.tree.actions.SubstructureFromListAction extends AbstractRuleAction implements Serializable

serialVersionUID:

3623439416208828042L

Class toxtree.ui.tree.actions.SubstructuresFromFileAction extends AbstractRuleAction implements Serializable

serialVersionUID:

7289392201061470542L

Class toxtree.ui.tree.actions.TreeOptionsAction extends DataModuleAction implements Serializable

serialVersionUID:

4763457462786443549L

Class toxtree.ui.tree.actions.VerifyUnreachableRulesAction extends AbstractTreeAction implements Serializable

serialVersionUID:

8060426219000130503L

Class toxtree.ui.tree.actions.VerifyUnusedCategories extends AbstractTreeAction implements Serializable

serialVersionUID:

-5183327943193841464L

Class toxtree.ui.tree.actions.ViewTreeAction extends DataModuleAction implements Serializable

serialVersionUID:

-6269437325466855082L

Package toxtree.ui.tree.categories

Class toxtree.ui.tree.categories.CategoriesPanel extends JPanel implements Serializable

serialVersionUID:

2440504663404133065L

Serialized Fields

categories

IDecisionCategories categories

result

IDecisionResult result

categoriesRenderer

CategoriesRenderer categoriesRenderer

model

CategoriesTableModel model

Class toxtree.ui.tree.categories.CategoriesTableModel extends ListTableModel<IDecisionCategory> implements Serializable

serialVersionUID:

5149481144969863275L

Serialized Fields

columnsno

int columnsno

Class toxtree.ui.tree.categories.CategoryPanel extends ToxTreeEditorPanel implements Serializable

serialVersionUID:

7058699257406721869L

Serialized Fields

category

IDecisionCategory category

Package toxtree.ui.tree.molecule

Class toxtree.ui.tree.molecule.CompoundPanel extends JPanel implements Serializable

serialVersionUID:

2945504935753073616L

Serialized Fields

dataContainer

DataContainer dataContainer

propertiesPanel

PropertyPanel propertiesPanel

picturePanel

ambit2.ui.Panel2D<A extends ambit2.ui.IMoleculeEditAction> picturePanel

navPanel

NavigationPanel navPanel

gridbag

GridBagLayout gridbag

Package toxtree.ui.tree.qsar

Class toxtree.ui.tree.qsar.DescriptorOptions extends OptionsPanel<org.openscience.cdk.qsar.IDescriptor> implements Serializable

serialVersionUID:

1067355677215575135L

Serialized Fields

dim

Dimension dim

dimmin

Dimension dimmin

Class toxtree.ui.tree.qsar.OptionsPanel extends JPanel implements Serializable

serialVersionUID:

-7284064363444159260L

Serialized Fields

object

Object object

labelsDescriptor

JLabel[] labelsDescriptor

textDescriptor

JFormattedTextField[] textDescriptor

labels

JLabel[] labels

text

JFormattedTextField[] text

Class toxtree.ui.tree.qsar.QSARModelEditor extends JTabbedPane implements Serializable

serialVersionUID:

-4958415500498598721L

Class toxtree.ui.tree.qsar.RuleQSARModelEditor extends RuleEditor implements Serializable

serialVersionUID:

-730521306532147560L

Package toxtree.ui.tree.rules

Class toxtree.ui.tree.rules.DecisionNodesListTableModel extends ListTableModel implements Serializable

serialVersionUID:

-487377621045549030L

Class toxtree.ui.tree.rules.RuleDeleteSubstructureAction extends RuleMoleculeEditAction implements Serializable

serialVersionUID:

-4045206486346175089L

Serialized Fields

selectedIndex

int selectedIndex

Class toxtree.ui.tree.rules.RuleEditor extends ToxTreeEditorPanel implements Serializable

serialVersionUID:

3020833157127429753L

Serialized Fields

rule

IDecisionRule rule

Class toxtree.ui.tree.rules.RuleExampleEditAction extends RuleMoleculeEditAction implements Serializable

serialVersionUID:

5783467183012345391L

Serialized Fields

answer

boolean answer

Class toxtree.ui.tree.rules.RuleMoleculeEditAction extends MoleculeEditAction implements Serializable

serialVersionUID:

2965976481724298257L

Serialized Fields

rule

IDecisionRule rule

Class toxtree.ui.tree.rules.RulePanel extends JPanel implements Serializable

serialVersionUID:

4523210818884113893L

Serialized Fields

rule

IDecisionRule rule

idField

JTextField idField

nameField

JTextField nameField

explanation

JEditorPane explanation

yesExample

JRadioButton yesExample

noExample

JRadioButton noExample

moleculeEditAction

RuleExampleEditAction moleculeEditAction

panel2D

ambit2.ui.Panel2D<A extends ambit2.ui.IMoleculeEditAction> panel2D

panel2DBorder

TitledBorder panel2DBorder

editMolButton

JButton editMolButton

editable

boolean editable

bgColor

Color bgColor

Class toxtree.ui.tree.rules.RulePropertyEditor extends RuleEditor implements Serializable

serialVersionUID:

-555524195056865333L

Serialized Fields

propertyNameField

JTextField propertyNameField

propertyValueField

JTextField propertyValueField

conditionBox

JComboBox<E> conditionBox

Class toxtree.ui.tree.rules.RuleRangeEditor extends RuleEditor implements Serializable

serialVersionUID:

-1332379568034013673L

Serialized Fields

propertyNameField

JTextField propertyNameField

propertyMinValueField

JTextField propertyMinValueField

propertyMaxValueField

JTextField propertyMaxValueField

Class toxtree.ui.tree.rules.RuleStructuresPanel extends RuleEditor implements Serializable

serialVersionUID:

-5000057842144986302L

Serialized Fields

fileLabel

JTextField fileLabel

Class toxtree.ui.tree.rules.RuleSubstructuresEditAction extends RuleMoleculeEditAction implements Serializable

serialVersionUID:

-9152027843437776751L

Serialized Fields

createNewMolecule

boolean createNewMolecule

index

int index

Class toxtree.ui.tree.rules.SmartsPanelEditor extends JPanel implements Serializable

serialVersionUID:

-8958523921952590821L

Serialized Fields

smartsPattern

ambit2.smarts.query.ISmartsPattern<T> smartsPattern

patternName

JTextField patternName

pattern

JTextArea pattern

status

JLabel status

panel2D

ambit2.ui.Panel2D<A extends ambit2.ui.IMoleculeEditAction> panel2D

testMolecule

org.openscience.cdk.interfaces.IAtomContainer testMolecule

moleculeEditAction

MoleculeEditAction moleculeEditAction

smartsPatternFactory

ambit2.smarts.query.ISmartsPatternFactory smartsPatternFactory

Class toxtree.ui.tree.rules.SMARTSRuleEditor extends RuleEditor implements Serializable

serialVersionUID:

-8216887948144449098L

Serialized Fields

tableModel

HashtableModel tableModel

allBox

JCheckBox allBox

table

JTable table

selectedIndex

int selectedIndex

Class toxtree.ui.tree.rules.SubstructureRulePanel extends JPanel implements Serializable

serialVersionUID:

-4834888295381016875L

Serialized Fields

editable

boolean editable

substructureEditAction

RuleSubstructuresEditAction substructureEditAction

listSubstructureAction

SubstructureFromListAction listSubstructureAction

fileSubstructureAction

SubstructuresFromFileAction fileSubstructureAction

newSubstructureAction

RuleSubstructuresEditAction newSubstructureAction

deleteSubstructureAction

RuleDeleteSubstructureAction deleteSubstructureAction

rule

IRuleSubstructures rule

rulePanel

RulePanel rulePanel

listPanel

ListPanel listPanel

panel2D

ambit2.ui.Panel2D<A extends ambit2.ui.IMoleculeEditAction> panel2D

actions

ActionMap actions

Package toxtree.ui.wizard

Class toxtree.ui.wizard.EditorPanel extends JPanel implements Serializable

serialVersionUID:

4466287344655179932L

Serialized Fields

component

Component component

Class toxtree.ui.wizard.RadioBoxPanel extends JPanel implements Serializable

serialVersionUID:

2266091648110037618L

Serialized Fields

buttons

List<E> buttons

options

List<E> options

Package verhaar

Class verhaar.VerhaarScheme extends UserDefinedTree implements Serializable

serialVersionUID:

8432896817503373854L

Package verhaar.categories

Class verhaar.categories.Class1BaselineToxicity extends ToxicCategory implements Serializable

serialVersionUID:

-2345773088272297347L

Class verhaar.categories.Class2LessInertCompounds extends ToxicCategory implements Serializable

serialVersionUID:

-6642389618393648862L

Class verhaar.categories.Class3UnspecificReactivity extends ToxicCategory implements Serializable

serialVersionUID:

-6264556087368900618L

Class verhaar.categories.Class4SpecificMechanism extends DefaultCategory implements Serializable

serialVersionUID:

-4846111390893325568L

Class verhaar.categories.Class5Unknown extends DefaultCategory implements Serializable

serialVersionUID:

2349050959864652279L

Package verhaar.query

Class verhaar.query.QueryAssociationBond extends org.openscience.cdk.silent.Bond implements Serializable

serialVersionUID:

3818342873632507668L

Class verhaar.query.QueryUnsaturatedBond extends org.openscience.cdk.Bond implements Serializable

serialVersionUID:

-7992622589225200981L

Package verhaar.rules

Class verhaar.rules.Rule01 extends RuleElementsCounter implements Serializable

serialVersionUID:

-6192036039649653201L

Class verhaar.rules.Rule03 extends RuleMolecularMassRange implements Serializable

serialVersionUID:

-2799745152926450353L

Serialized Fields

alertsCounter

IAlertCounter alertsCounter

Class verhaar.rules.Rule11 extends RuleElementsCounter implements Serializable

serialVersionUID:

1198975584661041102L

Class verhaar.rules.Rule13 extends RuleElementsCounter implements Serializable

serialVersionUID:

3138693766571092656L

Class verhaar.rules.Rule14 extends RuleElementsCounter implements Serializable

serialVersionUID:

5751606276335590438L

Class verhaar.rules.Rule141 extends RuleIsOpenChain implements Serializable

serialVersionUID:

6769690721536931384L

Serialized Fields

alertsCounter

IAlertCounter alertsCounter

Class verhaar.rules.Rule142 extends RuleOnlyAllowedSubstructuresCounter implements Serializable

serialVersionUID:

8731063548318963732L

Class verhaar.rules.Rule143 extends RuleRingAllowedSubstituents implements Serializable

serialVersionUID:

4746595221282769930L

Serialized Fields

alertsCounter

IAlertCounter alertsCounter

Class verhaar.rules.Rule144 extends Rule143 implements Serializable

serialVersionUID:

-2147762024464054397L

Class verhaar.rules.Rule15 extends RuleElementsCounter implements Serializable

serialVersionUID:

3777403460548583859L

Class verhaar.rules.Rule151 extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

5360285168848609301L

Serialized Fields

smarts

Object[][] smarts

Class verhaar.rules.Rule152 extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

8890813695847536800L

Serialized Fields

smarts

Object[][] smarts

Class verhaar.rules.Rule153 extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

7020871482125337347L

Serialized Fields

smarts

Object[][] smarts

Class verhaar.rules.Rule154 extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

-453162542432372824L

Serialized Fields

smarts

Object[][] smarts

Class verhaar.rules.Rule16 extends RuleElementsCounter implements Serializable

serialVersionUID:

8079213460512460167L

Class verhaar.rules.Rule161 extends RuleOnlyAllowedSubstructuresCounter implements Serializable

serialVersionUID:

8043348345646950482L

Class verhaar.rules.Rule17 extends RuleElementsCounter implements Serializable

serialVersionUID:

1870426414874844065L

Class verhaar.rules.Rule171 extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

5540666661281282664L

Serialized Fields

rules15

AbstractRuleSmartSubstructure<T>[] rules15

smarts

Object[][] smarts

Class verhaar.rules.Rule21 extends RuleRingMainStrucSubstituents implements Serializable

serialVersionUID:

-7909075887636611371L

Serialized Fields

alertsCounter

IAlertCounter alertsCounter

nitroIDs

ArrayList<E> nitroIDs

phenolIDs

ArrayList<E> phenolIDs

halogenIDs

ArrayList<E> halogenIDs

maxHalogens

int maxHalogens

maxNitroGroups

int maxNitroGroups

Class verhaar.rules.Rule22 extends Rule21 implements Serializable

serialVersionUID:

-8022147695771746487L

Class verhaar.rules.Rule23 extends Rule21 implements Serializable

serialVersionUID:

-1821301568847254378L

Class verhaar.rules.Rule24 extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

-5243019325725208478L

Serialized Fields

smarts

String[][] smarts

Class verhaar.rules.Rule25 extends Rule21 implements Serializable

serialVersionUID:

3463495375143364381L

Class verhaar.rules.Rule31 extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

3137352402099295614L

Serialized Fields

smarts

String[][] smarts

Class verhaar.rules.Rule32 extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

-1272754289124954435L

Serialized Fields

smarts

String[][] smarts

Class verhaar.rules.Rule33 extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

-8529289379596515979L

Serialized Fields

smarts

String[][] smarts

Class verhaar.rules.Rule34 extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

9151362364966315658L

Serialized Fields

alertsCounter

IAlertCounter alertsCounter

smarts

String[][] smarts

Class verhaar.rules.Rule35 extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

6071923192483785229L

Serialized Fields

smarts

String[][] smarts

Class verhaar.rules.Rule36 extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

2381714483943148195L

Serialized Fields

smarts

String[][] smarts

Class verhaar.rules.Rule37 extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

832778835073402054L

Serialized Fields

smarts

String[][] smarts

Class verhaar.rules.Rule38 extends RuleSMARTSSubstructureAmbit implements Serializable

serialVersionUID:

-673417256329929944L

Serialized Fields

smarts

String[][] smarts

Class verhaar.rules.Rule4 extends StructureAlert implements Serializable

serialVersionUID:

5579727497271403749L

Class verhaar.rules.RuleAlertsClass1 extends RuleInitAlertCounter implements Serializable

serialVersionUID:

7143766029103047956L

Class verhaar.rules.RuleAlertsClass2 extends RuleInitAlertCounter implements Serializable

serialVersionUID:

7143766029103047956L

Class verhaar.rules.RuleAlertsClass3 extends RuleInitAlertCounter implements Serializable

serialVersionUID:

7143766029103047956L

Class verhaar.rules.RuleIonicGroups extends RuleSubstructures implements Serializable

serialVersionUID:

-9123772835964334753L

Serialized Fields

alertsCounter

IAlertCounter alertsCounter

Class verhaar.rules.RuleLogPRange extends RuleDescriptorRange implements Serializable

serialVersionUID:

4370691438824318131L

Serialized Fields

alertsCounter

IAlertCounter alertsCounter

params

Object[] params

Class verhaar.rules.RuleRingMainStrucSubstituents extends RuleRingAllowedSubstituents implements Serializable

serialVersionUID:

-6483397620197083015L

Class verhaar.rules.RuleVerifyClass1Alerts extends RuleVerifyAlertsCounter implements Serializable

serialVersionUID:

3321777668352576351L

Class verhaar.rules.RuleVerifyClass2Alerts extends RuleVerifyAlertsCounter implements Serializable

serialVersionUID:

9032067488054886185L

Class verhaar.rules.RuleVerifyClass3Alerts extends RuleVerifyAlertsCounter implements Serializable

serialVersionUID:

649391526513875024L

Class verhaar.rules.VerhaarTreeResult extends TreeResult implements Serializable

serialVersionUID:

2222797084633419611L

Package verhaar.rules.helper

Class verhaar.rules.helper.RuleAnySubstructureCounter extends RuleAnySubstructure implements Serializable

serialVersionUID:

180517824565997711L

Serialized Fields

alertsCounter

IAlertCounter alertsCounter

Class verhaar.rules.helper.RuleElementsCounter extends RuleElements implements Serializable

serialVersionUID:

673556779228542499L

Serialized Fields

alertsCounter

IAlertCounter alertsCounter

Class verhaar.rules.helper.RuleOnlyAllowedSubstructuresCounter extends RuleOnlyAllowedSubstructures implements Serializable

serialVersionUID:

-3700379077322343876L

Serialized Fields

alertsCounter

IAlertCounter alertsCounter