sicret.rules

Class RuleHasOnlyC_H_O

java.lang.Object

java.util.Observable

toxTree.tree.AbstractRule

toxTree.tree.rules.RuleElements

toxTree.tree.rules.RuleAllAllowedElements

sicret.rules.RuleHasOnlyC_H_O

All Implemented Interfaces:

Serializable, Cloneable, IDecisionRule, XMLSerializable

Direct Known Subclasses:

RuleHasOnlyC_H_O

public class RuleHasOnlyC_H_O
extends RuleAllAllowedElements

Contains only these elements C,O.

Author:

Nina Jeliazkova nina@acad.bg, Martin Martinov Modified Dec 17, 2006

See Also:

Serialized Form

Field Summary

Fields inherited from class toxTree.tree.rules.RuleElements

comparison, elements, mode, modeAllSpecifiedElements, modeAnySpecifiedElements, modeOnlySpecifiedElements

Fields inherited from class toxTree.tree.AbstractRule

changes, editable, ERR_STRUCTURENOTPREPROCESSED, examples, explanation, id, logger, MSG_NO, MSG_YES, no, residueIDHidden, title

Fields inherited from interface toxTree.core.XMLSerializable

xmltag_CATEGORIES, xmltag_CATEGORY, xmltag_CATEGORYTHRESHOLD, xmltag_CLASS, xmltag_EXPLANATION, xmltag_ID, xmltag_METHOD, xmltag_METHODPARAMETER, xmltag_METHODS, xmltag_NAME, xmltag_RULE, xmltag_RULEEXAMPLE, xmltag_RULES, xmltag_TREEROOT

Constructor Summary

Constructors

Constructor and Description
RuleHasOnlyC_H_O()

Method Summary

Modifier and Type	Method and Description
String	getTitle() Rule name is an arbitrary string, preferably one line, reflecting the essence of the rule (e.g.
boolean	isImplemented()
void	setTitle(String name) Sets rule name
boolean	verifyRule(org.openscience.cdk.interfaces.IAtomContainer mol) This is the core of a IDecisionRule behaviour.

Methods inherited from class toxTree.tree.rules.RuleElements

addElement, contains, equals, getElements, gethalogens, getMode, getSelector, hasOnlySpecifiedElements, removeElement, select, setComparisonMode, setElements, setHalogens, setHalogens, setMode, verifyRule

Methods inherited from class toxTree.tree.AbstractRule

addPropertyChangeListener, clearFlags, clone, createRule, fromXML, getEditor, getExampleMolecule, getExamples, getExplanation, getID, getNum, hideResiduesID, isEditable, isResidueIDHidden, log, log, log, makeMolecule, removePropertyChangeListener, setEditable, setExampleMolecule, setExamples, setExplanation, setID, setNum, toShallowXML, toString, toXML

Methods inherited from class java.util.Observable

addObserver, clearChanged, countObservers, deleteObserver, deleteObservers, hasChanged, notifyObservers, notifyObservers, setChanged

Methods inherited from class java.lang.Object

finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

RuleHasOnlyC_H_O

public RuleHasOnlyC_H_O()

Method Detail

verifyRule

public boolean verifyRule(org.openscience.cdk.interfaces.IAtomContainer mol)
                   throws DecisionMethodException

Description copied from interface: IDecisionRule

This is the core of a IDecisionRule behaviour. The method returns true if the answer of the rule is YES for the analyzed molecule org.openscience.cdk.interfaces.AtomContainer and FALSE if the answer of the rule is NO for the analyzed molecule org.openscience.cdk.interfaces.AtomContainer??

Specified by:

verifyRule in interface IDecisionRule

Overrides:

verifyRule in class RuleElements

Parameters:

mol - org.openscience.cdk.interfaces.AtomContainer

Returns:

rule result, boolean

Throws:

DecisionMethodException

isImplemented

public boolean isImplemented()

Specified by:

isImplemented in interface IDecisionRule

Overrides:

isImplemented in class RuleElements

Returns:

false if the rule is not implemented and true if it is

getTitle

public String getTitle()

Description copied from interface: IDecisionRule

Rule name is an arbitrary string, preferably one line, reflecting the essence of the rule
(e.g. "Is aromatic")

Specified by:

getTitle in interface IDecisionRule

Overrides:

getTitle in class RuleElements

Returns:

rule name

See Also:

IDecisionRule.getTitle()

setTitle

public void setTitle(String name)

Description copied from interface: IDecisionRule

Sets rule name

Specified by:

setTitle in interface IDecisionRule

Overrides:

setTitle in class AbstractRule

See Also:

IDecisionRule.setTitle(java.lang.String)