Uses of Interface
toxTree.core.IDecisionResult

Packages that use IDecisionResult

Package	Description
com.molecularnetworks.start
cramer2	Class CramerRules is the implementation of Cramer rules [Cramer et al,78].
eye	Class SicretRules is the implementation of BfR rules for estimating skin irritation and corrosion potential.
mic
mic.rules
michaelacceptors
mutant
mutant.rules
sicret	Class SicretRules is the implementation of BfR rules for estimating skin irritation and corrosion potential.
toxTree.apps.toxForest
toxTree.core	This packages contains only interface definitions, defining essential classes in toxTree application.
toxtree.data
toxTree.io.batch	Batch processing facility.
toxtree.plugins.ames
toxtree.plugins.ames.rules
toxtree.plugins.dnabinding
toxtree.plugins.dnabinding.rules
toxtree.plugins.func
toxtree.plugins.func.rules
toxtree.plugins.proteinbinding
toxtree.plugins.proteinbinding.rules
toxtree.plugins.skinsensitisation
toxtree.plugins.skinsensitisation.rules
toxtree.plugins.smartcyp
toxtree.plugins.verhaar2.rules	The package contains implementations of IDecisionRule rules for VerhaarScheme decision tree.
toxTree.tree	This packages contains abstract and default classes implementing the interfaces defined in toxTree.core package.
toxTree.tree.cramer	Class CramerRules is the implementation of Cramer rules [Cramer et al,78].
toxtree.tree.cramer3
toxtree.ui.tree.categories	User interface for viewing and editing categories IDecisionCategory in a decision tree IDecisionMethod
verhaar.rules	The package contains implementations of IDecisionRule rules for VerhaarScheme decision tree.

Uses of IDecisionResult in com.molecularnetworks.start

Methods in com.molecularnetworks.start with parameters of type IDecisionResult

Modifier and Type	Method and Description
StringBuffer	BiodgeradationRules.explainRules(IDecisionResult result, boolean verbose)

Uses of IDecisionResult in cramer2

Methods in cramer2 that return IDecisionResult

Modifier and Type	Method and Description
IDecisionResult	CramerRulesWithExtensions.createDecisionResult()

Methods in cramer2 with parameters of type IDecisionResult

Modifier and Type	Method and Description
StringBuffer	CramerRulesWithExtensions.explainRules(IDecisionResult result, boolean verbose)

Uses of IDecisionResult in eye

Methods in eye with parameters of type IDecisionResult

Modifier and Type	Method and Description
StringBuffer	EyeIrritationRules.explainRules(IDecisionResult result, boolean verbose)

Uses of IDecisionResult in mic

Methods in mic that return IDecisionResult

Modifier and Type	Method and Description
IDecisionResult	MICRules.createDecisionResult()

Methods in mic with parameters of type IDecisionResult

Modifier and Type	Method and Description
StringBuffer	MICRules.explainRules(IDecisionResult result, boolean verbose)

Uses of IDecisionResult in mic.rules

Classes in mic.rules that implement IDecisionResult

Modifier and Type	Class and Description
class	MICTreeResult

Uses of IDecisionResult in michaelacceptors

Classes in michaelacceptors that implement IDecisionResult

Modifier and Type	Class and Description
class	MATreeResult

Methods in michaelacceptors that return IDecisionResult

Modifier and Type	Method and Description
IDecisionResult	MichaelAcceptorRules.createDecisionResult()

Methods in michaelacceptors with parameters of type IDecisionResult

Modifier and Type	Method and Description
StringBuffer	MichaelAcceptorRules.explainRules(IDecisionResult result, boolean verbose)

Uses of IDecisionResult in mutant

Methods in mutant that return IDecisionResult

Modifier and Type	Method and Description
IDecisionResult	BB_CarcMutRules.createDecisionResult()

Methods in mutant with parameters of type IDecisionResult

Modifier and Type	Method and Description
StringBuffer	BB_CarcMutRules.explainRules(IDecisionResult result, boolean verbose)

Uses of IDecisionResult in mutant.rules

Classes in mutant.rules that implement IDecisionResult

Modifier and Type	Class and Description
class	MutantTreeResult

Uses of IDecisionResult in sicret

Methods in sicret with parameters of type IDecisionResult

Modifier and Type	Method and Description
StringBuffer	SicretRules.explainRules(IDecisionResult result, boolean verbose)

Uses of IDecisionResult in toxTree.apps.toxForest

Methods in toxTree.apps.toxForest with parameters of type IDecisionResult

Modifier and Type	Method and Description
void	ToxForestData.classify(IDecisionResult treeResult)
protected void	ToxForestData.setResult(IDecisionResult treeResult, org.openscience.cdk.interfaces.IAtomContainer molecule)
protected void	ToxForestDataModulePanel.viewVerboseResult(IDecisionResult result)

Uses of IDecisionResult in toxTree.core

Methods in toxTree.core that return IDecisionResult

Modifier and Type	Method and Description
IDecisionResult	IDecisionMethod.createDecisionResult()

Methods in toxTree.core with parameters of type IDecisionResult

Modifier and Type	Method and Description
boolean	IDecisionMethod.classify(org.openscience.cdk.interfaces.IAtomContainer mol, IDecisionResult result)
StringBuffer	IDecisionMethod.explainRules(IDecisionResult result, boolean verbose)
boolean	IDecisionMethod.verifyRules(org.openscience.cdk.interfaces.IAtomContainer mol, IDecisionResult result)

Uses of IDecisionResult in toxtree.data

Fields in toxtree.data declared as IDecisionResult

Modifier and Type	Field and Description
protected IDecisionResult	DecisionMethodsDataModule.treeResult

Methods in toxtree.data that return IDecisionResult

Modifier and Type	Method and Description
IDecisionResult	DecisionMethodsDataModule.getTreeResult()

Methods in toxtree.data with parameters of type IDecisionResult

Modifier and Type	Method and Description
void	DecisionMethodData.classify(IDecisionResult treeResult)
ConfusionMatrix	DecisionMethodData.classifyAll(IDecisionResult treeResult)
void	DataContainer.filter(IDecisionResult treeResult)
void	DecisionMethodData.filterAll(IDecisionResult treeResult)
protected void	DecisionMethodData.setResult(IDecisionResult treeResult, org.openscience.cdk.interfaces.IAtomContainer molecule)

Uses of IDecisionResult in toxTree.io.batch

Fields in toxTree.io.batch declared as IDecisionResult

Modifier and Type	Field and Description
protected IDecisionResult	ToxTreeBatchProcessing.decisionResult

Uses of IDecisionResult in toxtree.plugins.ames

Methods in toxtree.plugins.ames that return IDecisionResult

Modifier and Type	Method and Description
IDecisionResult	AmesMutagenicityRules.createDecisionResult()

Methods in toxtree.plugins.ames with parameters of type IDecisionResult

Modifier and Type	Method and Description
StringBuffer	AmesMutagenicityRules.explainRules(IDecisionResult result, boolean verbose)

Uses of IDecisionResult in toxtree.plugins.ames.rules

Classes in toxtree.plugins.ames.rules that implement IDecisionResult

Modifier and Type	Class and Description
class	AmesMutagenicityTreeResult

Uses of IDecisionResult in toxtree.plugins.dnabinding

Methods in toxtree.plugins.dnabinding that return IDecisionResult

Modifier and Type	Method and Description
IDecisionResult	DNABindingPlugin.createDecisionResult()

Methods in toxtree.plugins.dnabinding with parameters of type IDecisionResult

Modifier and Type	Method and Description
StringBuffer	DNABindingPlugin.explainRules(IDecisionResult result, boolean verbose)

Uses of IDecisionResult in toxtree.plugins.dnabinding.rules

Classes in toxtree.plugins.dnabinding.rules that implement IDecisionResult

Modifier and Type	Class and Description
class	DNABindingTreeResult

Uses of IDecisionResult in toxtree.plugins.func

Methods in toxtree.plugins.func that return IDecisionResult

Modifier and Type	Method and Description
IDecisionResult	FuncRules.createDecisionResult()

Methods in toxtree.plugins.func with parameters of type IDecisionResult

Modifier and Type	Method and Description
StringBuffer	FuncRules.explainRules(IDecisionResult result, boolean verbose)

Uses of IDecisionResult in toxtree.plugins.func.rules

Classes in toxtree.plugins.func.rules that implement IDecisionResult

Modifier and Type	Class and Description
class	FuncTreeResult

Uses of IDecisionResult in toxtree.plugins.proteinbinding

Methods in toxtree.plugins.proteinbinding that return IDecisionResult

Modifier and Type	Method and Description
IDecisionResult	ProteinBindingPlugin.createDecisionResult()

Methods in toxtree.plugins.proteinbinding with parameters of type IDecisionResult

Modifier and Type	Method and Description
StringBuffer	ProteinBindingPlugin.explainRules(IDecisionResult result, boolean verbose)

Uses of IDecisionResult in toxtree.plugins.proteinbinding.rules

Classes in toxtree.plugins.proteinbinding.rules that implement IDecisionResult

Modifier and Type	Class and Description
class	ProteinBindingTreeResult

Uses of IDecisionResult in toxtree.plugins.skinsensitisation

Methods in toxtree.plugins.skinsensitisation that return IDecisionResult

Modifier and Type	Method and Description
IDecisionResult	SkinSensitisationPlugin.createDecisionResult()

Methods in toxtree.plugins.skinsensitisation with parameters of type IDecisionResult

Modifier and Type	Method and Description
StringBuffer	SkinSensitisationPlugin.explainRules(IDecisionResult result, boolean verbose)

Uses of IDecisionResult in toxtree.plugins.skinsensitisation.rules

Classes in toxtree.plugins.skinsensitisation.rules that implement IDecisionResult

Modifier and Type	Class and Description
class	SkinSensitisationTreeResult

Uses of IDecisionResult in toxtree.plugins.smartcyp

Classes in toxtree.plugins.smartcyp that implement IDecisionResult

Modifier and Type	Class and Description
class	SMARTCypTreeResult

Methods in toxtree.plugins.smartcyp that return IDecisionResult

Modifier and Type	Method and Description
IDecisionResult	SMARTCYPPlugin.createDecisionResult()

Methods in toxtree.plugins.smartcyp with parameters of type IDecisionResult

Modifier and Type	Method and Description
StringBuffer	SMARTCYPPlugin.explainRules(IDecisionResult result, boolean verbose)

Uses of IDecisionResult in toxtree.plugins.verhaar2.rules

Classes in toxtree.plugins.verhaar2.rules that implement IDecisionResult

Modifier and Type	Class and Description
class	Verhaar2TreeResult

Uses of IDecisionResult in toxTree.tree

Classes in toxTree.tree that implement IDecisionResult

Modifier and Type	Class and Description
class	BatchDecisionResultsList Encapsulates DecisionResultsList as IDecisionMethod.
class	TreeResult A default class implementing IDecisionResult

Methods in toxTree.tree that return IDecisionResult

Modifier and Type	Method and Description
IDecisionResult	AbstractTree.createDecisionResult()
IDecisionResult	BatchDecisionResultsList.createDecisionResult()
IDecisionResult	DecisionResultsList.getResult(int index)

Methods in toxTree.tree with parameters of type IDecisionResult

Modifier and Type	Method and Description
boolean	AbstractTree.classify(org.openscience.cdk.interfaces.IAtomContainer mol, IDecisionResult result)
boolean	BatchDecisionResultsList.classify(org.openscience.cdk.interfaces.IAtomContainer mol, IDecisionResult result)
StringBuffer	AbstractTree.explainRules(IDecisionResult result, boolean verbose)
StringBuffer	BatchDecisionResultsList.explainRules(IDecisionResult result, boolean verbose)
protected boolean	AbstractTree.verifyResidues(org.openscience.cdk.interfaces.IAtomContainerSet mols, IDecisionResult result, IDecisionRule rule)
boolean	AbstractTree.verifyRules(org.openscience.cdk.interfaces.IAtomContainer mol, IDecisionResult result) IDecisionRule.verifyRule(IAtomContainer)
boolean	BatchDecisionResultsList.verifyRules(org.openscience.cdk.interfaces.IAtomContainer mol, IDecisionResult result)
protected abstract boolean	AbstractTree.verifyRules(org.openscience.cdk.interfaces.IAtomContainer mol, IDecisionResult result, IDecisionRule rule) abstract method, to be implemented in the child class
protected boolean	UserDefinedTree.verifyRules(org.openscience.cdk.interfaces.IAtomContainer mol, IDecisionResult result, IDecisionRule topRule)

Uses of IDecisionResult in toxTree.tree.cramer

Classes in toxTree.tree.cramer that implement IDecisionResult

Modifier and Type	Class and Description
class	CramerTreeResult A descendant ot TreeResult, to be used by CramerRules.

Methods in toxTree.tree.cramer that return IDecisionResult

Modifier and Type	Method and Description
IDecisionResult	CramerRules.createDecisionResult()

Methods in toxTree.tree.cramer with parameters of type IDecisionResult

Modifier and Type	Method and Description
StringBuffer	CramerRules.explainRules(IDecisionResult result, boolean verbose)

Uses of IDecisionResult in toxtree.tree.cramer3

Classes in toxtree.tree.cramer3 that implement IDecisionResult

Modifier and Type	Class and Description
class	CDTResult A descendant ot TreeResult, to be used by CramerRules.

Methods in toxtree.tree.cramer3 that return IDecisionResult

Modifier and Type	Method and Description
IDecisionResult	RevisedCramerDecisionTree.createDecisionResult()

Methods in toxtree.tree.cramer3 with parameters of type IDecisionResult

Modifier and Type	Method and Description
StringBuffer	RevisedCramerDecisionTree.explainRules(IDecisionResult result, boolean verbose)

Uses of IDecisionResult in toxtree.ui.tree.categories

Fields in toxtree.ui.tree.categories declared as IDecisionResult

Modifier and Type	Field and Description
protected IDecisionResult	CategoriesPanel.result

Methods in toxtree.ui.tree.categories with parameters of type IDecisionResult

Modifier and Type	Method and Description
void	CategoriesPanel.setData(IDecisionCategories categories, IDecisionResult result)

Constructors in toxtree.ui.tree.categories with parameters of type IDecisionResult

Constructor and Description
CategoriesPanel(IDecisionCategories categories, IDecisionResult result)

Uses of IDecisionResult in verhaar.rules

Classes in verhaar.rules that implement IDecisionResult

Modifier and Type	Class and Description
class	VerhaarTreeResult