Uses of Class
toxTree.exceptions.DecisionResultException

Packages that use DecisionResultException

Package	Description
cramer2.categories
mic.rules
michaelacceptors
mutant.rules
toxTree.apps.toxForest
toxTree.core	This packages contains only interface definitions, defining essential classes in toxTree application.
toxtree.data
toxTree.exceptions	Exceptions defined for toxTree classes
toxtree.plugins.ames.rules
toxtree.plugins.dnabinding.rules
toxtree.plugins.func.rules
toxtree.plugins.proteinbinding.rules
toxtree.plugins.skinsensitisation.rules
toxtree.plugins.smartcyp
toxtree.plugins.verhaar2.rules	The package contains implementations of IDecisionRule rules for VerhaarScheme decision tree.
toxTree.tree	This packages contains abstract and default classes implementing the interfaces defined in toxTree.core package.
toxTree.tree.cramer	Class CramerRules is the implementation of Cramer rules [Cramer et al,78].
toxtree.tree.cramer3
verhaar.rules	The package contains implementations of IDecisionRule rules for VerhaarScheme decision tree.

Uses of DecisionResultException in cramer2.categories

Methods in cramer2.categories that throw DecisionResultException

Modifier and Type	Method and Description
void	CramerTreeResult.addRuleResult(IDecisionRule rule, boolean value, org.openscience.cdk.interfaces.IAtomContainer molecule)
void	CramerTreeResult.assignResult(org.openscience.cdk.interfaces.IAtomContainer mol)

Uses of DecisionResultException in mic.rules

Methods in mic.rules that throw DecisionResultException

Modifier and Type	Method and Description
void	MICTreeResult.addRuleResult(IDecisionRule rule, boolean value, org.openscience.cdk.interfaces.IAtomContainer molecule)
void	MICTreeResult.assignResult(org.openscience.cdk.interfaces.IAtomContainer mol)
Hashtable<String,String>	MICTreeResult.getExplanation(org.openscience.cdk.interfaces.IAtomContainer mol)

Uses of DecisionResultException in michaelacceptors

Methods in michaelacceptors that throw DecisionResultException

Modifier and Type	Method and Description
void	MATreeResult.addRuleResult(IDecisionRule rule, boolean value, org.openscience.cdk.interfaces.IAtomContainer molecule)

Uses of DecisionResultException in mutant.rules

Methods in mutant.rules that throw DecisionResultException

Modifier and Type	Method and Description
void	MutantTreeResult.addRuleResult(IDecisionRule rule, boolean value, org.openscience.cdk.interfaces.IAtomContainer molecule)
void	MutantTreeResult.assignResult(org.openscience.cdk.interfaces.IAtomContainer mol)
Hashtable<String,String>	MutantTreeResult.getExplanation(org.openscience.cdk.interfaces.IAtomContainer mol)

Uses of DecisionResultException in toxTree.apps.toxForest

Methods in toxTree.apps.toxForest that throw DecisionResultException

Modifier and Type	Method and Description
void	ToxForestData.classify(IDecisionResult treeResult)
ConfusionMatrix	ToxForestData.classifyAll(IDecisionMethodsList methods)

Uses of DecisionResultException in toxTree.core

Methods in toxTree.core that throw DecisionResultException

Modifier and Type	Method and Description
void	IDecisionResult.addRuleResult(IDecisionRule rule, boolean value, org.openscience.cdk.interfaces.IAtomContainer molecule)
void	IDecisionResult.assignResult(org.openscience.cdk.interfaces.IAtomContainer mol)
boolean	IDecisionResult.classify(org.openscience.cdk.interfaces.IAtomContainer mol)
StringBuffer	IDecisionResult.explain(boolean verbose)
IDecisionCategory	IDecisionResult.getCategory(int index)
org.openscience.cdk.interfaces.IAtomContainer	IDecisionResult.getMolecule(int index)
IDecisionRule	IDecisionResult.getRule(int index)
RuleResult	IDecisionResult.getRuleResult(int index)
void	IDecisionResult.hilightAlert(IDecisionRule rule)
void	IDecisionResult.hilightAlert(RuleResult ruleresult)
void	IDecisionResult.setMolecule(org.openscience.cdk.interfaces.IAtomContainer molecule)
void	IDecisionResult.setSilent(boolean silent)

Uses of DecisionResultException in toxtree.data

Methods in toxtree.data that throw DecisionResultException

Modifier and Type	Method and Description
void	DecisionMethodData.classify(IDecisionResult treeResult)
ConfusionMatrix	DecisionMethodData.classifyAll(IDecisionMethodsList methods)
ConfusionMatrix	DecisionMethodData.classifyAll(IDecisionResult treeResult)
void	DecisionMethodData.filterAll(IDecisionResult treeResult)

Uses of DecisionResultException in toxTree.exceptions

Subclasses of DecisionResultException in toxTree.exceptions

Modifier and Type	Class and Description
class	DCategoryUnknown TODO Add DCategoryUnassigned description
class	DecisionResultIOException
class	DecisionResultUIDException
class	DMethodNotAssigned TODO Add MethodNotAssigned description

Uses of DecisionResultException in toxtree.plugins.ames.rules

Methods in toxtree.plugins.ames.rules that throw DecisionResultException

Modifier and Type	Method and Description
void	AmesMutagenicityTreeResult.addRuleResult(IDecisionRule rule, boolean value, org.openscience.cdk.interfaces.IAtomContainer molecule)
void	AmesMutagenicityTreeResult.assignResult(org.openscience.cdk.interfaces.IAtomContainer mol)
Hashtable<String,String>	AmesMutagenicityTreeResult.getExplanation(org.openscience.cdk.interfaces.IAtomContainer mol)

Uses of DecisionResultException in toxtree.plugins.dnabinding.rules

Methods in toxtree.plugins.dnabinding.rules that throw DecisionResultException

Modifier and Type	Method and Description
void	DNABindingTreeResult.addRuleResult(IDecisionRule rule, boolean value, org.openscience.cdk.interfaces.IAtomContainer molecule)
void	DNABindingTreeResult.assignResult(org.openscience.cdk.interfaces.IAtomContainer mol)
Hashtable<String,String>	DNABindingTreeResult.getExplanation(org.openscience.cdk.interfaces.IAtomContainer mol)

Uses of DecisionResultException in toxtree.plugins.func.rules

Methods in toxtree.plugins.func.rules that throw DecisionResultException

Modifier and Type	Method and Description
void	FuncTreeResult.addRuleResult(IDecisionRule rule, boolean value, org.openscience.cdk.interfaces.IAtomContainer molecule)
void	FuncTreeResult.assignResult(org.openscience.cdk.interfaces.IAtomContainer mol)
Hashtable<String,String>	FuncTreeResult.getExplanation(org.openscience.cdk.interfaces.IAtomContainer mol)

Uses of DecisionResultException in toxtree.plugins.proteinbinding.rules

Methods in toxtree.plugins.proteinbinding.rules that throw DecisionResultException

Modifier and Type	Method and Description
void	ProteinBindingTreeResult.addRuleResult(IDecisionRule rule, boolean value, org.openscience.cdk.interfaces.IAtomContainer molecule)
void	ProteinBindingTreeResult.assignResult(org.openscience.cdk.interfaces.IAtomContainer mol)
Hashtable<String,String>	ProteinBindingTreeResult.getExplanation(org.openscience.cdk.interfaces.IAtomContainer mol)

Uses of DecisionResultException in toxtree.plugins.skinsensitisation.rules

Methods in toxtree.plugins.skinsensitisation.rules that throw DecisionResultException

Modifier and Type	Method and Description
void	SkinSensitisationTreeResult.addRuleResult(IDecisionRule rule, boolean value, org.openscience.cdk.interfaces.IAtomContainer molecule)
void	SkinSensitisationTreeResult.assignResult(org.openscience.cdk.interfaces.IAtomContainer mol)
Hashtable<String,String>	SkinSensitisationTreeResult.getExplanation(org.openscience.cdk.interfaces.IAtomContainer mol)

Uses of DecisionResultException in toxtree.plugins.smartcyp

Methods in toxtree.plugins.smartcyp that throw DecisionResultException

Modifier and Type	Method and Description
void	SMARTCypTreeResult.assignResult(org.openscience.cdk.interfaces.IAtomContainer mol)
Hashtable<String,String>	SMARTCypTreeResult.getExplanation(org.openscience.cdk.interfaces.IAtomContainer mol)

Uses of DecisionResultException in toxtree.plugins.verhaar2.rules

Methods in toxtree.plugins.verhaar2.rules that throw DecisionResultException

Modifier and Type	Method and Description
void	Verhaar2TreeResult.assignResult(org.openscience.cdk.interfaces.IAtomContainer mol)

Uses of DecisionResultException in toxTree.tree

Methods in toxTree.tree that throw DecisionResultException

Modifier and Type	Method and Description
void	TreeResult.addRuleResult(IDecisionRule rule, boolean value, org.openscience.cdk.interfaces.IAtomContainer molecule)
void	BatchDecisionResultsList.addRuleResult(IDecisionRule rule, boolean value, org.openscience.cdk.interfaces.IAtomContainer molecule)
void	TreeResult.assignResult(org.openscience.cdk.interfaces.IAtomContainer mol)
void	BatchDecisionResultsList.assignResult(org.openscience.cdk.interfaces.IAtomContainer mol)
boolean	TreeResult.classify(org.openscience.cdk.interfaces.IAtomContainer mol)
boolean	BatchDecisionResultsList.classify(org.openscience.cdk.interfaces.IAtomContainer mol)
StringBuffer	TreeResult.explain(boolean verbose) return StringBuffer with textual explanation of the rules executed
StringBuffer	BatchDecisionResultsList.explain(boolean verbose)
IDecisionCategory	TreeResult.getCategory(int index)
IDecisionCategory	BatchDecisionResultsList.getCategory(int index)
org.openscience.cdk.interfaces.IAtomContainer	TreeResult.getMolecule(int index)
org.openscience.cdk.interfaces.IAtomContainer	BatchDecisionResultsList.getMolecule(int index)
IDecisionRule	TreeResult.getRule(int index)
RuleResult	TreeResult.getRuleResult(int index)
RuleResult	BatchDecisionResultsList.getRuleResult(int index)
void	TreeResult.hilightAlert(IDecisionRule rule)
void	BatchDecisionResultsList.hilightAlert(IDecisionRule rule)
void	TreeResult.hilightAlert(RuleResult ruleResult)
void	BatchDecisionResultsList.hilightAlert(RuleResult ruleresult)
void	BatchDecisionResultsList.setMolecule(org.openscience.cdk.interfaces.IAtomContainer molecule)
void	TreeResult.setSilent(boolean silent)
void	BatchDecisionResultsList.setSilent(boolean silent)

Uses of DecisionResultException in toxTree.tree.cramer

Methods in toxTree.tree.cramer that throw DecisionResultException

Modifier and Type	Method and Description
void	CramerTreeResult.addRuleResult(IDecisionRule rule, boolean value, org.openscience.cdk.interfaces.IAtomContainer molecule)
void	CramerTreeResult.assignResult(org.openscience.cdk.interfaces.IAtomContainer mol)

Uses of DecisionResultException in toxtree.tree.cramer3

Methods in toxtree.tree.cramer3 that throw DecisionResultException

Modifier and Type	Method and Description
void	CDTResult.addRuleResult(IDecisionRule rule, boolean value, org.openscience.cdk.interfaces.IAtomContainer molecule)
void	CDTResult.assignResult(org.openscience.cdk.interfaces.IAtomContainer mol)

Uses of DecisionResultException in verhaar.rules

Methods in verhaar.rules that throw DecisionResultException

Modifier and Type	Method and Description
void	VerhaarTreeResult.assignResult(org.openscience.cdk.interfaces.IAtomContainer mol)