toxTree.io.batch

Class ToxTreeBatchProcessing

java.lang.Object

java.util.Observable

toxTree.io.batch.BatchProcessing

toxTree.io.batch.ChemObjectBatchProcessing

toxTree.io.batch.ToxTreeBatchProcessing

All Implemented Interfaces:

Serializable, IBatchProcessing

public class ToxTreeBatchProcessing
extends ChemObjectBatchProcessing

A ChemObjectBatchProcessing descendant , where processing is performed by IDecisionMethod

Author:

Nina Jeliazkova Modified 2008-3-22

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
protected IDecisionMethod	decisionMethod
protected String	decisionMethodFile
protected IDecisionResult	decisionResult

Fields inherited from class toxTree.io.batch.ChemObjectBatchProcessing

chemObject, CSV_INDEX, extensions, extensions_descr, reader, SDF_INDEX, SMI_INDEX, TXT_INDEX, writer

Fields inherited from class toxTree.io.batch.BatchProcessing

configFile, dateCreated, dateLastSaved, deleteConfigOnSuccess, inputFile, logger, MSG_CANTCREATEFILE, MSG_ERRORCOUNTING, MSG_ERRORSAVE, MSG_FILEDONOTEXISTS, MSG_OPEN, MSG_UNSUPPORTEDFORMAT, outputFile, saveStateFrequency, status, STATUS_ABORTED, STATUS_FINISHED, STATUS_NOTINITIALIZED, STATUS_NOTSTARTED, STATUS_PAUSED, STATUS_RUNNING, statusMsg, tmpDir

Constructor Summary

Constructors

Constructor and Description
ToxTreeBatchProcessing()
ToxTreeBatchProcessing(File input, File output)
ToxTreeBatchProcessing(String input, String output)

Method Summary

Modifier and Type	Method and Description
IDecisionMethod	getDecisionMethod()
void	processRecord()
void	saveConfig()
void	saveConfig(OutputStream out)
void	setDecisionMethod(IDecisionMethod decisionMethod)
void	start()
void	writeRecord()

Methods inherited from class toxTree.io.batch.ChemObjectBatchProcessing

closeInputFile, closeOutputFile, createOutputFile, getReader, hasNextRecord, openInputFile, readRecord

Methods inherited from class toxTree.io.batch.BatchProcessing

cancel, close, createConfigFile, equals, getConfigFile, getDateCreated, getDateLastProcessed, getInputFile, getOutputFile, getReadRecordsCount, getSaveStateFrequency, getStatus, getTempDir, getWrittenRecordsCount, isCancelled, isPaused, isRunning, isStatus, loadConfig, pause, setConfigFile, setSaveStateFrequency, setStatus, toString

Methods inherited from class java.util.Observable

addObserver, clearChanged, countObservers, deleteObserver, deleteObservers, hasChanged, notifyObservers, notifyObservers, setChanged

Methods inherited from class java.lang.Object

clone, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

decisionMethod

protected transient IDecisionMethod decisionMethod

decisionResult

protected transient IDecisionResult decisionResult

decisionMethodFile

protected String decisionMethodFile

Constructor Detail

ToxTreeBatchProcessing

public ToxTreeBatchProcessing()

ToxTreeBatchProcessing

public ToxTreeBatchProcessing(String input,
                              String output)
                       throws BatchProcessingException

Parameters:

input -

output -

Throws:

BatchProcessingException

ToxTreeBatchProcessing

public ToxTreeBatchProcessing(File input,
                              File output)
                       throws BatchProcessingException

Throws:

BatchProcessingException

Method Detail

processRecord

public void processRecord()
                   throws BatchProcessingException

Specified by:

processRecord in interface IBatchProcessing

Overrides:

processRecord in class ChemObjectBatchProcessing

Throws:

BatchProcessingException

writeRecord

public void writeRecord()
                 throws BatchProcessingException

Specified by:

writeRecord in interface IBatchProcessing

Overrides:

writeRecord in class ChemObjectBatchProcessing

Throws:

BatchProcessingException

getDecisionMethod

public IDecisionMethod getDecisionMethod()

Returns:

Returns the decisionMethod.

setDecisionMethod

public void setDecisionMethod(IDecisionMethod decisionMethod)

Parameters:

decisionMethod - The decisionMethod to set.

start

public void start()
           throws BatchProcessingException

Specified by:

start in interface IBatchProcessing

Overrides:

start in class ChemObjectBatchProcessing

Throws:

BatchProcessingException

saveConfig

public void saveConfig()
                throws BatchProcessingException

Specified by:

saveConfig in interface IBatchProcessing

Overrides:

saveConfig in class BatchProcessing

Throws:

BatchProcessingException

saveConfig

public void saveConfig(OutputStream out)
                throws BatchProcessingException

Overrides:

saveConfig in class BatchProcessing

Throws:

BatchProcessingException