toxTree.query

Class TopologyOrderQueryBond

java.lang.Object

org.openscience.cdk.isomorphism.matchers.QueryChemObject

org.openscience.cdk.isomorphism.matchers.QueryBond

org.openscience.cdk.isomorphism.matchers.OrderQueryBond

toxTree.query.TopologyOrderQueryBond

All Implemented Interfaces:

Cloneable, org.openscience.cdk.interfaces.IBond, org.openscience.cdk.interfaces.ICDKObject, org.openscience.cdk.interfaces.IChemObject, org.openscience.cdk.interfaces.IElectronContainer, org.openscience.cdk.isomorphism.matchers.IQueryBond

public class TopologyOrderQueryBond
extends org.openscience.cdk.isomorphism.matchers.OrderQueryBond

The same as OrderQueryBond with additional condition to be acyclic or cyclic.

Author:

Nina Jeliazkova Modified 2005-8-17

Nested Class Summary

Nested classes/interfaces inherited from interface org.openscience.cdk.interfaces.IBond

org.openscience.cdk.interfaces.IBond.Order, org.openscience.cdk.interfaces.IBond.Stereo

Field Summary

Fields

Modifier and Type	Field and Description
protected boolean	inRing

Fields inherited from class org.openscience.cdk.isomorphism.matchers.QueryBond

atomCount, atoms, electronCount, order, stereo

Constructor Summary

Constructors

Constructor and Description
TopologyOrderQueryBond(org.openscience.cdk.interfaces.IChemObjectBuilder builder)
TopologyOrderQueryBond(org.openscience.cdk.isomorphism.matchers.IQueryAtom arg0, org.openscience.cdk.isomorphism.matchers.IQueryAtom arg1, org.openscience.cdk.interfaces.IBond.Order arg2, boolean inRing, org.openscience.cdk.interfaces.IChemObjectBuilder builder)
TopologyOrderQueryBond(org.openscience.cdk.isomorphism.matchers.IQueryAtom arg0, org.openscience.cdk.isomorphism.matchers.IQueryAtom arg1, org.openscience.cdk.interfaces.IBond.Order arg2, org.openscience.cdk.interfaces.IChemObjectBuilder builder)

Method Summary

Modifier and Type	Method and Description
boolean	isInRing()
boolean	matches(org.openscience.cdk.interfaces.IBond arg0)
void	setInRing(boolean inRing)

Methods inherited from class org.openscience.cdk.isomorphism.matchers.OrderQueryBond

setAtomAt, setAtoms

Methods inherited from class org.openscience.cdk.isomorphism.matchers.QueryBond

atoms, clone, compare, contains, get2DCenter, get3DCenter, getAtom, getAtomCount, getConnectedAtom, getConnectedAtoms, getElectronCount, getOrder, getStereo, isAromatic, isConnectedTo, setAtom, setElectronCount, setIsAromatic, setIsInRing, setOrder, setStereo, toString

Methods inherited from class org.openscience.cdk.isomorphism.matchers.QueryChemObject

addListener, addProperties, getBuilder, getFlag, getFlags, getFlagValue, getID, getListenerCount, getNotification, getProperties, getProperty, getProperty, matches, notifyChanged, notifyChanged, removeListener, removeProperty, setFlag, setFlags, setID, setNotification, setProperties, setProperty

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.openscience.cdk.interfaces.IBond

atoms, clone, compare, contains, get2DCenter, get3DCenter, getAtom, getAtomCount, getConnectedAtom, getConnectedAtoms, getOrder, getStereo, isAromatic, isConnectedTo, setAtom, setIsAromatic, setIsInRing, setOrder, setStereo

Methods inherited from interface org.openscience.cdk.interfaces.IElectronContainer

getElectronCount, setElectronCount

Methods inherited from interface org.openscience.cdk.interfaces.IChemObject

addListener, addProperties, getFlag, getFlags, getFlagValue, getID, getListenerCount, getNotification, getProperties, getProperty, getProperty, notifyChanged, notifyChanged, removeListener, removeProperty, setFlag, setFlags, setID, setNotification, setProperties, setProperty, toString

Methods inherited from interface org.openscience.cdk.interfaces.ICDKObject

getBuilder

Field Detail

inRing

protected boolean inRing

Constructor Detail

TopologyOrderQueryBond

public TopologyOrderQueryBond(org.openscience.cdk.interfaces.IChemObjectBuilder builder)

TopologyOrderQueryBond

public TopologyOrderQueryBond(org.openscience.cdk.isomorphism.matchers.IQueryAtom arg0,
                              org.openscience.cdk.isomorphism.matchers.IQueryAtom arg1,
                              org.openscience.cdk.interfaces.IBond.Order arg2,
                              org.openscience.cdk.interfaces.IChemObjectBuilder builder)

Parameters:

arg0 -

arg1 -

arg2 -

TopologyOrderQueryBond

public TopologyOrderQueryBond(org.openscience.cdk.isomorphism.matchers.IQueryAtom arg0,
                              org.openscience.cdk.isomorphism.matchers.IQueryAtom arg1,
                              org.openscience.cdk.interfaces.IBond.Order arg2,
                              boolean inRing,
                              org.openscience.cdk.interfaces.IChemObjectBuilder builder)

Method Detail

matches

public boolean matches(org.openscience.cdk.interfaces.IBond arg0)

Specified by:

matches in interface org.openscience.cdk.isomorphism.matchers.IQueryBond

Overrides:

matches in class org.openscience.cdk.isomorphism.matchers.OrderQueryBond

isInRing

public boolean isInRing()

Specified by:

isInRing in interface org.openscience.cdk.interfaces.IBond

Overrides:

isInRing in class org.openscience.cdk.isomorphism.matchers.QueryBond

Returns:

Returns the inRing.

setInRing

public void setInRing(boolean inRing)

Parameters:

inRing - The inRing to set.