Uses of Class
toxTree.query.QueryAtomContainers

Packages that use QueryAtomContainers

Package	Description
cramer2.rules
mic.rules
sicret.rules	The package contains implementations of IDecisionRule rules for SicretRules decision tree.
toxTree.query	Various classes
toxTree.tree.cramer	Class CramerRules is the implementation of Cramer rules [Cramer et al,78].
toxTree.tree.rules	The package contains several generic implementations of IDecisionRule rules
toxtree.ui.tree	User interface for viewing and editing a decision tree IDecisionMethod
verhaar.rules	The package contains implementations of IDecisionRule rules for VerhaarScheme decision tree.

Uses of QueryAtomContainers in cramer2.rules

Methods in cramer2.rules that return QueryAtomContainers

Modifier and Type	Method and Description
protected QueryAtomContainers	RuleHasOnlySaltSulphonateSulphate.initQuery()

Uses of QueryAtomContainers in mic.rules

Methods in mic.rules that return QueryAtomContainers

Modifier and Type	Method and Description
protected QueryAtomContainers	SA26.initQuery()

Uses of QueryAtomContainers in sicret.rules

Methods in sicret.rules that return QueryAtomContainers

Modifier and Type	Method and Description
protected QueryAtomContainers	RuleAcidAnhydrides.initQuery()
protected QueryAtomContainers	RuleOandPQuinones.initQuery()
protected QueryAtomContainers	RuleDi_Tri_Nitrobenzenes.initQuery()
protected QueryAtomContainers	RuleCarbamoylHalide.initQuery()
protected QueryAtomContainers	RuleQuaternaryOrganicAmmoniumAndPhosphoniumSalts.initQuery()
protected QueryAtomContainers	RuleTriAndTetraHalogenatedBenzenes.initQuery()
protected QueryAtomContainers	RuleLactonesFusedOrUnsaturated.initQuery()
protected QueryAtomContainers	RuleAcrylicAcids.initQuery()
protected QueryAtomContainers	RuleHalonitrobenzene.initQuery()
protected QueryAtomContainers	RuleCatecholsResorcinolsHydroquinones.initQuery()

Uses of QueryAtomContainers in toxTree.query

Methods in toxTree.query that return QueryAtomContainers

Modifier and Type	Method and Description
static QueryAtomContainers	FunctionalGroups.getAllGroups()

Methods in toxTree.query with parameters of type QueryAtomContainers

Modifier and Type	Method and Description
static boolean	FunctionalGroups.hasMarkedOnlyTheseGroups(org.openscience.cdk.interfaces.IAtomContainer mol, QueryAtomContainers query)
static boolean	FunctionalGroups.hasOnlyTheseGroups(org.openscience.cdk.interfaces.IAtomContainer mol, QueryAtomContainers query, Collection ids, boolean isPreprocessed)
static boolean	FunctionalGroups.hasOnlyTheseGroups(org.openscience.cdk.interfaces.IAtomContainer mol, QueryAtomContainers query, Collection ids, boolean isPreprocessed, org.openscience.cdk.interfaces.IAtomContainer selected)

Uses of QueryAtomContainers in toxTree.tree.cramer

Methods in toxTree.tree.cramer that return QueryAtomContainers

Modifier and Type	Method and Description
protected QueryAtomContainers	RuleLactonesFusedOrUnsaturated.initQuery()
protected QueryAtomContainers	Rule32.initQuery()
protected QueryAtomContainers	RuleMonocycloalkanoneEtc.initQuery()
protected QueryAtomContainers	RuleOnlyFuncGroupsQ30.initQuery()
protected QueryAtomContainers	RuleLactoneOrCyclicDiester.initQuery()
protected QueryAtomContainers	RuleRingComplexSubstituents30.initQuery()
protected QueryAtomContainers	RuleHeterocyclicComplexSubstituents.initQuery()
protected QueryAtomContainers	RuleMonocarbocyclic.initQuery()
protected QueryAtomContainers	RuleHasOnlySaltSulphonateSulphate.initQuery()
protected QueryAtomContainers	RuleAliphaticWithSomeFuncGroups.initQuery()
protected QueryAtomContainers	RuleSomeBenzeneDerivatives.initQuery()
protected QueryAtomContainers	RuleCyclopropaneEtc.initQuery()

Uses of QueryAtomContainers in toxTree.tree.rules

Methods in toxTree.tree.rules that return QueryAtomContainers

Modifier and Type	Method and Description
QueryAtomContainers	RuleSubstructures.getQuery()
protected QueryAtomContainers	RuleSubstructures.initQuery()
protected QueryAtomContainers	RuleCarbohydrate.initQuery()

Methods in toxTree.tree.rules with parameters of type QueryAtomContainers

Modifier and Type	Method and Description
void	RuleSubstructures.setQuery(QueryAtomContainers query)

Uses of QueryAtomContainers in toxtree.ui.tree

Constructors in toxtree.ui.tree with parameters of type QueryAtomContainers

Constructor and Description
QueryAtomContainersModel(QueryAtomContainers list, IDecisionRule rule)

Uses of QueryAtomContainers in verhaar.rules

Methods in verhaar.rules that return QueryAtomContainers

Modifier and Type	Method and Description
protected QueryAtomContainers	RuleIonicGroups.initQuery()
protected QueryAtomContainers	Rule21.initQuery()
protected QueryAtomContainers	Rule161.initQuery()
protected QueryAtomContainers	RuleRingMainStrucSubstituents.initQuery()
protected QueryAtomContainers	Rule142.initQuery()
protected QueryAtomContainers	Rule143.initQuery()