DefaultCategory (Toxtree 3.1.0 API)

java.lang.Object
- java.util.Observable
- - toxTree.tree.DefaultCategory

All Implemented Interfaces:

ambit2.base.interfaces.ICategory, Serializable, Comparable<IDecisionCategory>, IDecisionCategory, XMLSerializable

Direct Known Subclasses:

AmesMutagenicityCategory, CategoryBiodegradable, CategoryMichaelAcceptor, CategoryPersistent, CategoryUnknown, CategoryUnknown, CategoryUnknown, CategoryUnknown, CategoryUnknown, Class4SpecificMechanism, Class5Unknown, CramerClass2, CramerClass2, CramerClass2, CYP1A2, CYP2A, CYP2B, CYP2C, CYP2D, CYP2E, CYP3A4, DefaultClass1, DefaultClass2, DNABindingCategory, Found, FuncCat1, FuncCat2, MutantCategory, NonToxicCategory, NoSites, NotFound, ProteinBindingCategory, RequireCompoundSpecificToxicityData, SitesHigherRank, SitesRank1, SitesRank2, SitesRank3, SkinSensitisationCategory, ToxicCategory
```
public class DefaultCategory
extends Observable
implements IDecisionCategory, XMLSerializable
```
The default class implementing IDecisionCategory interface

Version:

0.1, 2005-5-2

Author:

Nina Jeliazkova

See Also:

Serialized Form

Nested Class Summary
- Nested classes/interfaces inherited from interface ambit2.base.interfaces.ICategory
  ambit2.base.interfaces.ICategory.CategoryType

Field Summary

Fields
Modifier and Type Field and Description

protected String explanation

protected int id

protected String name

protected boolean selected

protected String threshold
- Fields inherited from interface toxTree.core.XMLSerializable
  xmltag_CATEGORIES, xmltag_CATEGORY, xmltag_CATEGORYTHRESHOLD, xmltag_CLASS, xmltag_EXPLANATION, xmltag_ID, xmltag_METHOD, xmltag_METHODPARAMETER, xmltag_METHODS, xmltag_NAME, xmltag_RULE, xmltag_RULEEXAMPLE, xmltag_RULES, xmltag_TREEROOT

Fields
Modifier and Type	Field and Description
`protected String`	`explanation`
`protected int`	`id`
`protected String`	`name`
`protected boolean`	`selected`
`protected String`	`threshold`

Constructor Summary

Constructors
Constructor and Description

DefaultCategory()
Constructor

DefaultCategory(String name, int id)
Constructor

Constructors
Constructor and Description
`DefaultCategory()` Constructor
`DefaultCategory(String name, int id)` Constructor

Method Summary

All Methods Instance Methods Concrete Methods
Modifier and Type	Method and Description
`int`	`compareTo(IDecisionCategory o)`
`boolean`	`equals(Object obj)`
`void`	`fromXML(Element xml)`
`ambit2.base.interfaces.ICategory.CategoryType`	`getCategoryType()`
`IDecisionCategoryEditor`	`getEditor()`
`String`	`getExplanation()`
`int`	`getID()`
`String`	`getName()`
`ambit2.base.interfaces.ICategory.CategoryType`	`getNegativeCategoryType()`
`String`	`getThreshold()`
`boolean`	`isSelected()`
`void`	`setCategoryType(ambit2.base.interfaces.ICategory.CategoryType categoryType)`
`void`	`setExplanation(String explanation)`
`void`	`setID(int id)`
`void`	`setName(String name)`
`void`	`setSelected(boolean selected)`
`void`	`setThreshold(String threshold)`
`Element`	`toShallowXML(Document document)`
`String`	`toString()`
`Element`	`toXML(Document document)`

Methods inherited from class java.util.Observable
addObserver, clearChanged, countObservers, deleteObserver, deleteObservers, hasChanged, notifyObservers, notifyObservers, setChanged

Methods inherited from class java.lang.Object
clone, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

- Field Detail
  - name
```
protected String name
```
  - id
```
protected int id
```
  - explanation
```
protected String explanation
```
  - threshold
```
protected String threshold
```
  - selected
```
protected boolean selected
```
- Constructor Detail
  - DefaultCategory
```
public DefaultCategory()
```
    Constructor
  - DefaultCategory
```
public DefaultCategory(String name,
                       int id)
```
    Constructor
    
    Parameters:
    
    name -
    
    id -
- Method Detail
  - getID
```
public int getID()
```
    Specified by:
    
    getID in interface IDecisionCategory
    
    See Also:
    
    IDecisionCategory.getID()
  - setID
```
public void setID(int id)
```
    Specified by:
    
    setID in interface IDecisionCategory
    
    See Also:
    
    IDecisionCategory.setID(int)
  - getName
```
public String getName()
```
    Specified by:
    
    getName in interface ambit2.base.interfaces.ICategory
    
    Specified by:
    
    getName in interface IDecisionCategory
    
    See Also:
    
    IDecisionCategory.getName()
  - setName
```
public void setName(String name)
```
    Specified by:
    
    setName in interface ambit2.base.interfaces.ICategory
    
    Specified by:
    
    setName in interface IDecisionCategory
    
    See Also:
    
    IDecisionCategory.setName(java.lang.String)
  - toString
```
public String toString()
```
    Overrides:
    
    toString in class Object
  - equals
```
public boolean equals(Object obj)
```
    Overrides:
    
    equals in class Object
  - compareTo
```
public int compareTo(IDecisionCategory o)
```
    Specified by:
    
    compareTo in interface Comparable<IDecisionCategory>
  - getExplanation
```
public String getExplanation()
```
    Specified by:
    
    getExplanation in interface IDecisionCategory
  - setExplanation
```
public void setExplanation(String explanation)
```
    Specified by:
    
    setExplanation in interface IDecisionCategory
  - getThreshold
```
public String getThreshold()
```
    Specified by:
    
    getThreshold in interface IDecisionCategory
  - setThreshold
```
public void setThreshold(String threshold)
```
    Specified by:
    
    setThreshold in interface IDecisionCategory
  - getEditor
```
public IDecisionCategoryEditor getEditor()
```
    Specified by:
    
    getEditor in interface IDecisionCategory
  - fromXML
```
public void fromXML(Element xml)
             throws XMLDecisionMethodException
```
    Specified by:
    
    fromXML in interface XMLSerializable
    
    Throws:
    
    XMLDecisionMethodException
  - toShallowXML
```
public Element toShallowXML(Document document)
                     throws XMLDecisionMethodException
```
    Specified by:
    
    toShallowXML in interface XMLSerializable
    
    Throws:
    
    XMLDecisionMethodException
  - toXML
```
public Element toXML(Document document)
              throws XMLDecisionMethodException
```
    Specified by:
    
    toXML in interface XMLSerializable
    
    Throws:
    
    XMLDecisionMethodException
  - isSelected
```
public boolean isSelected()
```
    Specified by:
    
    isSelected in interface IDecisionCategory
  - setSelected
```
public void setSelected(boolean selected)
```
    Specified by:
    
    setSelected in interface IDecisionCategory
  - setCategoryType
```
public void setCategoryType(ambit2.base.interfaces.ICategory.CategoryType categoryType)
```
    Specified by:
    
    setCategoryType in interface ambit2.base.interfaces.ICategory
  - getCategoryType
```
public ambit2.base.interfaces.ICategory.CategoryType getCategoryType()
```
    Specified by:
    
    getCategoryType in interface ambit2.base.interfaces.ICategory
  - getNegativeCategoryType
```
public ambit2.base.interfaces.ICategory.CategoryType getNegativeCategoryType()
```
    Specified by:
    
    getNegativeCategoryType in interface ambit2.base.interfaces.ICategory

Class DefaultCategory

Nested Class Summary

Nested classes/interfaces inherited from interface ambit2.base.interfaces.ICategory

Field Summary

Fields inherited from interface toxTree.core.XMLSerializable

Constructor Summary

Method Summary

Methods inherited from class java.util.Observable

Methods inherited from class java.lang.Object

Field Detail

name

id

explanation

threshold

selected

Constructor Detail

DefaultCategory

DefaultCategory

Method Detail

getID

setID

getName

setName

toString

equals

compareTo

getExplanation

setExplanation

getThreshold

setThreshold

getEditor

fromXML

toShallowXML

toXML

isSelected

setSelected

setCategoryType

getCategoryType

getNegativeCategoryType