Uses of Class
toxTree.tree.UserDefinedTree

Packages that use UserDefinedTree

Package	Description
com.molecularnetworks.start
cramer2	Class CramerRules is the implementation of Cramer rules [Cramer et al,78].
eye	Class SicretRules is the implementation of BfR rules for estimating skin irritation and corrosion potential.
mic
michaelacceptors
mutant
sicret	Class SicretRules is the implementation of BfR rules for estimating skin irritation and corrosion potential.
toxtree.plugins.ames
toxtree.plugins.dnabinding
toxtree.plugins.func
toxtree.plugins.kroes
toxtree.plugins.lewis
toxtree.plugins.moa
toxtree.plugins.proteinbinding
toxtree.plugins.search
toxtree.plugins.skinsensitisation
toxtree.plugins.smartcyp
toxtree.plugins.verhaar2	Class toxtree.plugins.verhaar2.VerhaarScheme is the implementation of modified Verhaar structural scheme, according to recommendation from
toxTree.tree	This packages contains abstract and default classes implementing the interfaces defined in toxTree.core package.
toxTree.tree.cramer	Class CramerRules is the implementation of Cramer rules [Cramer et al,78].
toxtree.tree.cramer3
toxTree.tree.demo	Two simple demo decision trees.
verhaar	Class VerhaarScheme is the implementation of Verhaar structural scheme for estimating toxicity mode of action.

Uses of UserDefinedTree in com.molecularnetworks.start

Subclasses of UserDefinedTree in com.molecularnetworks.start

Modifier and Type	Class and Description
class	BiodgeradationRules Wrapper class that knows the biodegradation rules that are available in the toxBiodegradation plugin.

Uses of UserDefinedTree in cramer2

Subclasses of UserDefinedTree in cramer2

Modifier and Type	Class and Description
class	CramerRulesWithExtensions TODO update An UserDefinedTree descendant, implementing the decision tree described in "Cramer G.

Uses of UserDefinedTree in eye

Subclasses of UserDefinedTree in eye

Modifier and Type	Class and Description
class	EyeIrritationRules Decision tree for estimating skin irritation and corrosion potential.

Uses of UserDefinedTree in mic

Subclasses of UserDefinedTree in mic

Modifier and Type	Class and Description
class	MICRules

Uses of UserDefinedTree in michaelacceptors

Subclasses of UserDefinedTree in michaelacceptors

Modifier and Type	Class and Description
class	MichaelAcceptorRules

Uses of UserDefinedTree in mutant

Subclasses of UserDefinedTree in mutant

Modifier and Type	Class and Description
class	BB_CarcMutRules

Uses of UserDefinedTree in sicret

Subclasses of UserDefinedTree in sicret

Modifier and Type	Class and Description
class	SicretRules Decision tree for estimating skin irritation and corrosion potential.

Uses of UserDefinedTree in toxtree.plugins.ames

Subclasses of UserDefinedTree in toxtree.plugins.ames

Modifier and Type	Class and Description
class	AmesMutagenicityRules

Uses of UserDefinedTree in toxtree.plugins.dnabinding

Subclasses of UserDefinedTree in toxtree.plugins.dnabinding

Modifier and Type	Class and Description
class	DNABindingPlugin Protein binding

Uses of UserDefinedTree in toxtree.plugins.func

Subclasses of UserDefinedTree in toxtree.plugins.func

Modifier and Type	Class and Description
class	FuncRules

Uses of UserDefinedTree in toxtree.plugins.kroes

Subclasses of UserDefinedTree in toxtree.plugins.kroes

Modifier and Type	Class and Description
class	Kroes1Tree

Uses of UserDefinedTree in toxtree.plugins.lewis

Subclasses of UserDefinedTree in toxtree.plugins.lewis

Modifier and Type	Class and Description
class	LewisTree derived by Weka from table2.

Uses of UserDefinedTree in toxtree.plugins.moa

Subclasses of UserDefinedTree in toxtree.plugins.moa

Modifier and Type	Class and Description
class	MOARules

Uses of UserDefinedTree in toxtree.plugins.proteinbinding

Subclasses of UserDefinedTree in toxtree.plugins.proteinbinding

Modifier and Type	Class and Description
class	ProteinBindingPlugin Protein binding

Uses of UserDefinedTree in toxtree.plugins.search

Subclasses of UserDefinedTree in toxtree.plugins.search

Modifier and Type	Class and Description
class	CompoundLookup

Uses of UserDefinedTree in toxtree.plugins.skinsensitisation

Subclasses of UserDefinedTree in toxtree.plugins.skinsensitisation

Modifier and Type	Class and Description
class	SkinSensitisationPlugin Skin sensitisation

Uses of UserDefinedTree in toxtree.plugins.smartcyp

Subclasses of UserDefinedTree in toxtree.plugins.smartcyp

Modifier and Type	Class and Description
class	SMARTCYPPlugin

Uses of UserDefinedTree in toxtree.plugins.verhaar2

Subclasses of UserDefinedTree in toxtree.plugins.verhaar2

Modifier and Type	Class and Description
class	VerhaarScheme2 An implementaton of Verhaar scheme for predicting toxicity mode of action.

Uses of UserDefinedTree in toxTree.tree

Methods in toxTree.tree with parameters of type UserDefinedTree

Modifier and Type	Method and Description
List<ambit2.base.data.Property>	UserDefinedTree.process(UserDefinedTree target)

Uses of UserDefinedTree in toxTree.tree.cramer

Subclasses of UserDefinedTree in toxTree.tree.cramer

Modifier and Type	Class and Description
class	CramerRules An UserDefinedTree descendant, implementing the decision tree described in "Cramer G.

Uses of UserDefinedTree in toxtree.tree.cramer3

Subclasses of UserDefinedTree in toxtree.tree.cramer3

Modifier and Type	Class and Description
class	RevisedCramerDecisionTree Assigns categories: toxTree.tree.cramer3.CramerClass1 toxTree.tree.cramer3.CramerClass2 toxTree.tree.cramer3.CramerClass2

Uses of UserDefinedTree in toxTree.tree.demo

Subclasses of UserDefinedTree in toxTree.tree.demo

Modifier and Type	Class and Description
class	SMARTSTree
class	SubstructureTree A demo decision tree consisting of a single decision rule , which checks for the presence of benzene ring.

Uses of UserDefinedTree in verhaar

Subclasses of UserDefinedTree in verhaar

Modifier and Type	Class and Description
class	VerhaarScheme An implementaton of Verhaar scheme for predicting toxicity mode of action.