toxTree.tree.cramer

Class RuleHasOtherThanC_H_O_N_S2

java.lang.Object

java.util.Observable

toxTree.tree.AbstractRule

toxTree.tree.rules.RuleElements

toxTree.tree.cramer.RuleHasOtherThanC_H_O_N_S2

All Implemented Interfaces:

Serializable, Cloneable, IDecisionRule, XMLSerializable

public class RuleHasOtherThanC_H_O_N_S2
extends RuleElements

Rule 3 of the Cramer scheme (see CramerRules)

Version:

0.1, 2005-5-2

Author:

Nina Jeliazkova

See Also:

Serialized Form

Field Summary

Fields inherited from class toxTree.tree.rules.RuleElements

comparison, elements, mode, modeAllSpecifiedElements, modeAnySpecifiedElements, modeOnlySpecifiedElements

Fields inherited from class toxTree.tree.AbstractRule

changes, editable, ERR_STRUCTURENOTPREPROCESSED, examples, explanation, id, logger, MSG_NO, MSG_YES, no, residueIDHidden, title

Fields inherited from interface toxTree.core.XMLSerializable

xmltag_CATEGORIES, xmltag_CATEGORY, xmltag_CATEGORYTHRESHOLD, xmltag_CLASS, xmltag_EXPLANATION, xmltag_ID, xmltag_METHOD, xmltag_METHODPARAMETER, xmltag_METHODS, xmltag_NAME, xmltag_RULE, xmltag_RULEEXAMPLE, xmltag_RULES, xmltag_TREEROOT

Constructor Summary

Constructors

Constructor and Description
RuleHasOtherThanC_H_O_N_S2() Constructor

Method Summary

Modifier and Type	Method and Description
String	getTitle() Rule name is an arbitrary string, preferably one line, reflecting the essence of the rule (e.g.
boolean	isImplemented()
boolean	oldVerifyRule(org.openscience.cdk.interfaces.IAtomContainer mol, org.openscience.cdk.interfaces.IAtomContainer selected)
void	setTitle(String name) Sets rule name
boolean	verifyRule(org.openscience.cdk.interfaces.IAtomContainer mol) Verifies the rule.
boolean	verifyRule(org.openscience.cdk.interfaces.IAtomContainer mol, org.openscience.cdk.interfaces.IAtomContainer selected)

Methods inherited from class toxTree.tree.rules.RuleElements

addElement, contains, equals, getElements, gethalogens, getMode, getSelector, hasOnlySpecifiedElements, removeElement, select, setComparisonMode, setElements, setHalogens, setHalogens, setMode

Methods inherited from class toxTree.tree.AbstractRule

addPropertyChangeListener, clearFlags, clone, createRule, fromXML, getEditor, getExampleMolecule, getExamples, getExplanation, getID, getNum, hideResiduesID, isEditable, isResidueIDHidden, log, log, log, makeMolecule, removePropertyChangeListener, setEditable, setExampleMolecule, setExamples, setExplanation, setID, setNum, toShallowXML, toString, toXML

Methods inherited from class java.util.Observable

addObserver, clearChanged, countObservers, deleteObserver, deleteObservers, hasChanged, notifyObservers, notifyObservers, setChanged

Methods inherited from class java.lang.Object

finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Constructor Detail

RuleHasOtherThanC_H_O_N_S2

public RuleHasOtherThanC_H_O_N_S2()

Constructor

Method Detail

verifyRule

public boolean verifyRule(org.openscience.cdk.interfaces.IAtomContainer mol)
                   throws DecisionMethodException

Verifies the rule.

Specified by:

verifyRule in interface IDecisionRule

Overrides:

verifyRule in class RuleElements

Parameters:

mol - org.openscience.cdk.interfaces.AtomContainer

Returns:

rule result, boolean

Throws:

DecisionMethodException

See Also:

IDecisionRule.verifyRule(IAtomContainer)

verifyRule

public boolean verifyRule(org.openscience.cdk.interfaces.IAtomContainer mol,
                          org.openscience.cdk.interfaces.IAtomContainer selected)
                   throws DecisionMethodException

Overrides:

verifyRule in class RuleElements

Throws:

DecisionMethodException

oldVerifyRule

public boolean oldVerifyRule(org.openscience.cdk.interfaces.IAtomContainer mol,
                             org.openscience.cdk.interfaces.IAtomContainer selected)
                      throws DecisionMethodException

Throws:

DecisionMethodException

isImplemented

public boolean isImplemented()

Specified by:

isImplemented in interface IDecisionRule

Overrides:

isImplemented in class RuleElements

Returns:

false if the rule is not implemented and true if it is

getTitle

public String getTitle()

Description copied from interface: IDecisionRule

Rule name is an arbitrary string, preferably one line, reflecting the essence of the rule
(e.g. "Is aromatic")

Specified by:

getTitle in interface IDecisionRule

Overrides:

getTitle in class RuleElements

Returns:

rule name

See Also:

IDecisionRule.getTitle()

setTitle

public void setTitle(String name)

Description copied from interface: IDecisionRule

Sets rule name

Specified by:

setTitle in interface IDecisionRule

Overrides:

setTitle in class AbstractRule

See Also:

IDecisionRule.setTitle(java.lang.String)