toxTree.tree.rules

Class RuleInitAlertCounter

java.lang.Object

java.util.Observable

toxTree.tree.AbstractRule

toxTree.tree.rules.RuleVerifyProperty

toxTree.tree.rules.RuleInitAlertCounter

All Implemented Interfaces:

Serializable, Cloneable, IDecisionInteractive, IDecisionRule, IImplementationDetails, XMLSerializable

Direct Known Subclasses:

RuleAlertsAche, RuleAlertsAmes, RuleAlertsClass1, RuleAlertsClass2, RuleAlertsClass3, RuleAlertsCNS, RuleAlertsForAmesMutagenicity, RuleAlertsForCarcinogenicity, RuleAlertsForFunc, RuleAlertsForGenotoxicCarcinogenicity, RuleAlertsForGenotoxicCarcinogenicity, RuleAlertsForMIC, RuleAlertsForNewAmesMutagenicity, RuleAlertsNarcosis2_2_1, RuleAlertsNarcosis3, RuleAlertsNongenotoxicCarcinogenicity, RuleAlertsReactive, RuleAlertsUncouplers, RuleDNABindingAlerts, RuleProteinBindingAlerts, RuleSkinSensitisationAlerts, RuleVerifyAlertsCounter

public class RuleInitAlertCounter
extends RuleVerifyProperty

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from interface toxTree.core.IDecisionInteractive

IDecisionInteractive.UserOptions

Field Summary

Fields

Modifier and Type	Field and Description
static String	ALERTSCounter
static String	ALERTSMessage

Fields inherited from class toxTree.tree.rules.RuleVerifyProperty

condition, condition_equals, condition_higher, condition_lower, listener, nf, options, propertyExamples, propertyName, propertyStaticValue, propertyUnits

Fields inherited from class toxTree.tree.AbstractRule

changes, editable, ERR_STRUCTURENOTPREPROCESSED, examples, explanation, id, logger, MSG_NO, MSG_YES, no, residueIDHidden, title

Fields inherited from interface toxTree.core.XMLSerializable

xmltag_CATEGORIES, xmltag_CATEGORY, xmltag_CATEGORYTHRESHOLD, xmltag_CLASS, xmltag_EXPLANATION, xmltag_ID, xmltag_METHOD, xmltag_METHODPARAMETER, xmltag_METHODS, xmltag_NAME, xmltag_RULE, xmltag_RULEEXAMPLE, xmltag_RULES, xmltag_TREEROOT

Constructor Summary

Constructors

Constructor and Description
RuleInitAlertCounter()
RuleInitAlertCounter(String propertyName, String units, String condition, double value)

Method Summary

Modifier and Type	Method and Description
String	getImplementationDetails()
boolean	isImplemented()
boolean	verifyRule(org.openscience.cdk.interfaces.IAtomContainer mol) Assings value returned by RuleVerifyProperty.getProperty() to molecule property with name given by RuleVerifyProperty.getPropertyName().

Methods inherited from class toxTree.tree.rules.RuleVerifyProperty

compare, getCaption, getCondition, getExampleMolecule, getExplanation, getInteractive, getListener, getOptions, getProperty, getPropertyName, getPropertyUnits, getSelector, inputProperty, removeListener, setCondition, setInteractive, setListener, setOptions, setProperty, setPropertyName, setPropertyUnits

Methods inherited from class toxTree.tree.AbstractRule

addPropertyChangeListener, clearFlags, clone, createRule, equals, fromXML, getEditor, getExamples, getID, getNum, getTitle, hideResiduesID, isEditable, isResidueIDHidden, log, log, log, makeMolecule, removePropertyChangeListener, setEditable, setExampleMolecule, setExamples, setExplanation, setID, setNum, setTitle, toShallowXML, toString, toXML

Methods inherited from class java.util.Observable

addObserver, clearChanged, countObservers, deleteObserver, deleteObservers, hasChanged, notifyObservers, notifyObservers, setChanged

Methods inherited from class java.lang.Object

finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

ALERTSCounter

public static String ALERTSCounter

ALERTSMessage

public static String ALERTSMessage

Constructor Detail

RuleInitAlertCounter

public RuleInitAlertCounter()

RuleInitAlertCounter

public RuleInitAlertCounter(String propertyName,
                            String units,
                            String condition,
                            double value)

Method Detail

verifyRule

public boolean verifyRule(org.openscience.cdk.interfaces.IAtomContainer mol)
                   throws DecisionMethodException

Assings value returned by RuleVerifyProperty.getProperty() to molecule property with name given by RuleVerifyProperty.getPropertyName(). Always returns true;

Specified by:

verifyRule in interface IDecisionRule

Overrides:

verifyRule in class RuleVerifyProperty

Parameters:

mol - org.openscience.cdk.interfaces.AtomContainer

Returns:

rule result, boolean

Throws:

DecisionMethodException

isImplemented

public boolean isImplemented()

Specified by:

isImplemented in interface IDecisionRule

Overrides:

isImplemented in class RuleVerifyProperty

Returns:

false if the rule is not implemented and true if it is

getImplementationDetails

public String getImplementationDetails()

Specified by:

getImplementationDetails in interface IImplementationDetails

Overrides:

getImplementationDetails in class RuleVerifyProperty