toxtree.plugins.dnabinding.rules

Class DNABindingTreeResult

java.lang.Object

toxTree.tree.TreeResult

toxtree.plugins.dnabinding.rules.DNABindingTreeResult

All Implemented Interfaces:

Serializable, Comparable, IDecisionMethodPrority, IDecisionResult, IProgressStatus

public class DNABindingTreeResult
extends TreeResult

See Also:

Serialized Form

Field Summary

Fields

Modifier and Type	Field and Description
protected static String	SUFFIX

Fields inherited from class toxTree.tree.TreeResult

assignedCategories, category, changes, decisionMethod, logger, notify, originalMolecule, ruleResults, status, web

Constructor Summary

Constructors

Constructor and Description
DNABindingTreeResult()

Method Summary

Modifier and Type	Method and Description
void	addRuleResult(IDecisionRule rule, boolean value, org.openscience.cdk.interfaces.IAtomContainer molecule)
void	assignResult(org.openscience.cdk.interfaces.IAtomContainer mol)
Hashtable<String,String>	getExplanation(org.openscience.cdk.interfaces.IAtomContainer mol)
List<CategoryFilter>	getFilters()
List<ambit2.base.data.Property>	getResultProperties() Returns the properties to contain the result in Property class
String[]	getResultPropertyNames() Returns the name of the property that will contain the result

Methods inherited from class toxTree.tree.TreeResult

acceptCategory, addCategory, addPropertyChangeListener, classify, clear, clearResults, compareTo, equals, explain, fireChangeEvent, firePropertyChangeEvent, firePropertyChangeEvent, firePropertyChangeEvent, getAssignedCategories, getCategory, getCategory, getDecisionMethod, getMolecule, getOriginalMolecule, getPriority, getPropertyChangeListeners, getReference, getRule, getRuleResult, getRuleResults, getRuleResultsCount, hilightAlert, hilightAlert, isError, isEstimated, isEstimating, isNotify, removePropertyChangeListener, setCategory, setDecisionMethod, setError, setEstimated, setEstimated, setEstimating, setMolecule, setNotify, setOriginalMolecule, setPercentEstimated, setPriority, setRuleResults, setSilent, setWeb, toString

Methods inherited from class java.lang.Object

clone, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Field Detail

SUFFIX

protected static String SUFFIX

Constructor Detail

DNABindingTreeResult

public DNABindingTreeResult()

Method Detail

assignResult

public void assignResult(org.openscience.cdk.interfaces.IAtomContainer mol)
                  throws DecisionResultException

Specified by:

assignResult in interface IDecisionResult

Overrides:

assignResult in class TreeResult

Throws:

DecisionResultException

getResultProperties

public List<ambit2.base.data.Property> getResultProperties()
                                                    throws net.idea.modbcum.i.exceptions.AmbitException

Description copied from interface: IDecisionResult

Returns the properties to contain the result in Property class

Specified by:

getResultProperties in interface IDecisionResult

Overrides:

getResultProperties in class TreeResult

Returns:

Throws:

net.idea.modbcum.i.exceptions.AmbitException

addRuleResult

public void addRuleResult(IDecisionRule rule,
                          boolean value,
                          org.openscience.cdk.interfaces.IAtomContainer molecule)
                   throws DecisionResultException

Specified by:

addRuleResult in interface IDecisionResult

Overrides:

addRuleResult in class TreeResult

Throws:

DecisionResultException

getResultPropertyNames

public String[] getResultPropertyNames()

Description copied from interface: IDecisionResult

Returns the name of the property that will contain the result

Specified by:

getResultPropertyNames in interface IDecisionResult

Overrides:

getResultPropertyNames in class TreeResult

getExplanation

public Hashtable<String,String> getExplanation(org.openscience.cdk.interfaces.IAtomContainer mol)
                                        throws DecisionResultException

Throws:

DecisionResultException

getFilters

public List<CategoryFilter> getFilters()

Specified by:

getFilters in interface IDecisionResult

Overrides:

getFilters in class TreeResult