public class Find extends AbstractRule
| Modifier and Type | Field and Description |
|---|---|
protected ambit2.base.processors.search.AbstractFinder.MODE |
mode |
protected ambit2.base.data.Template |
profile |
protected ambit2.base.processors.search.AbstractFinder.SITE |
searchSite |
changes, editable, ERR_STRUCTURENOTPREPROCESSED, examples, explanation, id, logger, MSG_NO, MSG_YES, no, residueIDHidden, titlexmltag_CATEGORIES, xmltag_CATEGORY, xmltag_CATEGORYTHRESHOLD, xmltag_CLASS, xmltag_EXPLANATION, xmltag_ID, xmltag_METHOD, xmltag_METHODPARAMETER, xmltag_METHODS, xmltag_NAME, xmltag_RULE, xmltag_RULEEXAMPLE, xmltag_RULES, xmltag_TREEROOT| Constructor and Description |
|---|
Find() |
| Modifier and Type | Method and Description |
|---|---|
protected net.idea.modbcum.i.processors.IProcessor |
configure(ambit2.base.data.Template profile) |
boolean |
verifyRule(org.openscience.cdk.interfaces.IAtomContainer mol)
This is the core of a
IDecisionRule behaviour. |
addPropertyChangeListener, clearFlags, clone, createRule, equals, fromXML, getEditor, getExampleMolecule, getExamples, getExplanation, getID, getNum, getSelector, getTitle, hideResiduesID, isEditable, isImplemented, isResidueIDHidden, log, log, log, makeMolecule, removePropertyChangeListener, setEditable, setExampleMolecule, setExamples, setExplanation, setID, setNum, setTitle, toShallowXML, toString, toXMLaddObserver, clearChanged, countObservers, deleteObserver, deleteObservers, hasChanged, notifyObservers, notifyObservers, setChangedprotected ambit2.base.processors.search.AbstractFinder.SITE searchSite
protected ambit2.base.processors.search.AbstractFinder.MODE mode
protected ambit2.base.data.Template profile
public boolean verifyRule(org.openscience.cdk.interfaces.IAtomContainer mol)
throws DecisionMethodException
IDecisionRuleIDecisionRule behaviour. The method returns true
if the answer of the rule is YES for the analyzed molecule org.openscience.cdk.interfaces.AtomContainer and FALSE
if the answer of the rule is NO for the analyzed molecule org.openscience.cdk.interfaces.AtomContainer??mol - org.openscience.cdk.interfaces.AtomContainerDecisionMethodExceptionprotected net.idea.modbcum.i.processors.IProcessor configure(ambit2.base.data.Template profile)
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