verhaar.query

Class QueryAssociationBond

java.lang.Object

org.openscience.cdk.silent.ChemObject

org.openscience.cdk.silent.ElectronContainer

org.openscience.cdk.silent.Bond

verhaar.query.QueryAssociationBond

All Implemented Interfaces:

Serializable, Cloneable, org.openscience.cdk.interfaces.IBond, org.openscience.cdk.interfaces.ICDKObject, org.openscience.cdk.interfaces.IChemObject, org.openscience.cdk.interfaces.IElectronContainer, org.openscience.cdk.isomorphism.matchers.IQueryBond

public class QueryAssociationBond
extends org.openscience.cdk.silent.Bond
implements org.openscience.cdk.isomorphism.matchers.IQueryBond

Used to query for ionic (association ) bond. Verifies if a bond is an instance of MyAssociationBond. Should be modified to use Association once org.openscience.cdk.isomorphism.matchers.QueryBond#matches(org.openscience.cdk.interfaces.Bond) method accepts ElectronContainer instead of org.openscience.cdk.interfaces.Bond. Implements QueryBond.

Author:

Nina Jeliazkova Modified 2005-10-30

See Also:

Serialized Form

Nested Class Summary

Nested classes/interfaces inherited from interface org.openscience.cdk.interfaces.IBond

org.openscience.cdk.interfaces.IBond.Order, org.openscience.cdk.interfaces.IBond.Stereo

Field Summary

Fields inherited from class org.openscience.cdk.silent.Bond

atomCount, atoms, order, stereo

Fields inherited from class org.openscience.cdk.silent.ElectronContainer

electronCount

Constructor Summary

Constructors

Constructor and Description
QueryAssociationBond()
QueryAssociationBond(org.openscience.cdk.interfaces.IAtom arg0, org.openscience.cdk.interfaces.IAtom arg1)
QueryAssociationBond(org.openscience.cdk.interfaces.IAtom arg0, org.openscience.cdk.interfaces.IAtom arg1, org.openscience.cdk.interfaces.IBond.Order arg2)
QueryAssociationBond(org.openscience.cdk.interfaces.IAtom arg0, org.openscience.cdk.interfaces.IAtom arg1, org.openscience.cdk.interfaces.IBond.Order arg2, org.openscience.cdk.interfaces.IBond.Stereo arg3)

Method Summary

Modifier and Type	Method and Description
boolean	matches(org.openscience.cdk.interfaces.IBond arg0)

Methods inherited from class org.openscience.cdk.silent.Bond

atoms, clone, compare, contains, get2DCenter, get3DCenter, getAtom, getAtomCount, getConnectedAtom, getConnectedAtoms, getOrder, getStereo, isAromatic, isConnectedTo, isInRing, setAtom, setAtoms, setIsAromatic, setIsInRing, setOrder, setStereo, toString

Methods inherited from class org.openscience.cdk.silent.ElectronContainer

getElectronCount, setElectronCount

Methods inherited from class org.openscience.cdk.silent.ChemObject

addListener, addProperties, getBuilder, getFlag, getFlags, getFlagValue, getID, getListenerCount, getNotification, getProperties, getProperty, getProperty, notifyChanged, notifyChanged, removeListener, removeProperty, setFlag, setFlags, setID, setNotification, setProperties, setProperty, shallowCopy

Methods inherited from class java.lang.Object

equals, finalize, getClass, hashCode, notify, notifyAll, wait, wait, wait

Methods inherited from interface org.openscience.cdk.interfaces.IBond

atoms, clone, compare, contains, get2DCenter, get3DCenter, getAtom, getAtomCount, getConnectedAtom, getConnectedAtoms, getOrder, getStereo, isAromatic, isConnectedTo, isInRing, setAtom, setAtoms, setIsAromatic, setIsInRing, setOrder, setStereo

Methods inherited from interface org.openscience.cdk.interfaces.IElectronContainer

getElectronCount, setElectronCount

Methods inherited from interface org.openscience.cdk.interfaces.IChemObject

addListener, addProperties, getFlag, getFlags, getFlagValue, getID, getListenerCount, getNotification, getProperties, getProperty, getProperty, notifyChanged, notifyChanged, removeListener, removeProperty, setFlag, setFlags, setID, setNotification, setProperties, setProperty, toString

Methods inherited from interface org.openscience.cdk.interfaces.ICDKObject

getBuilder

Constructor Detail

QueryAssociationBond

public QueryAssociationBond()

QueryAssociationBond

public QueryAssociationBond(org.openscience.cdk.interfaces.IAtom arg0,
                            org.openscience.cdk.interfaces.IAtom arg1)

Parameters:

arg0 -

arg1 -

QueryAssociationBond

public QueryAssociationBond(org.openscience.cdk.interfaces.IAtom arg0,
                            org.openscience.cdk.interfaces.IAtom arg1,
                            org.openscience.cdk.interfaces.IBond.Order arg2)

Parameters:

arg0 -

arg1 -

arg2 -

QueryAssociationBond

public QueryAssociationBond(org.openscience.cdk.interfaces.IAtom arg0,
                            org.openscience.cdk.interfaces.IAtom arg1,
                            org.openscience.cdk.interfaces.IBond.Order arg2,
                            org.openscience.cdk.interfaces.IBond.Stereo arg3)

Parameters:

arg0 -

arg1 -

arg2 -

arg3 -

Method Detail

matches

public boolean matches(org.openscience.cdk.interfaces.IBond arg0)

Specified by:

matches in interface org.openscience.cdk.isomorphism.matchers.IQueryBond